EWM23453.1, cds7220 (CDS) Nannochloropsis gaditana

Overview
NameEWM23453.1
Unique Namecds7220
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:85145..85409 +
Alignment locationCM002471.1:85549..85667 +
Alignment locationCM002471.1:85890..86071 +
Alignment locationCM002471.1:86348..86582 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23453.1
Productprotein of unknown function DUF202
Orig transcript idgnl|cribi|Naga_100415g2.10370.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:85145..85409 +
CM002471.1supercontigCM002471.1:85549..85667 +
CM002471.1supercontigCM002471.1:85890..86071 +
CM002471.1supercontigCM002471.1:86348..86582 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Cellular Component
TermDefinition
GO:0005773vacuole
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003807DUF202
Homology
BLAST of EWM23453.1 vs. NCBI_GenBank
Match: gi|585104498|gb|EWM23453.1| (protein of unknown function DUF202 [Nannochloropsis gaditana])

HSP 1 Score: 538.88 bits (1387), Expect = 0.000e+0
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query:    1 MPPGGGTFGVWLSIFVYRRSQCFVDCPSSTRLAPLATDSSRAFPPPALKMSERTSLLKSSAEPKPVYVVPRTNSISRVTVENVKASPHYGRSQFPSSTGFLERLWPFAYQDTTRYGKIRKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNEFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDILGDKEAAAPATPLSMKGGLGSGIKSGPVVTPAPLTGP 266
            MPPGGGTFGVWLSIFVYRRSQCFVDCPSSTRLAPLATDSSRAFPPPALKMSERTSLLKSSAEPKPVYVVPRTNSISRVTVENVKASPHYGRSQFPSSTGFLERLWPFAYQDTTRYGKIRKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNEFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDILGDKEAAAPATPLSMKGGLGSGIKSGPVVTPAPLTGP
Sbjct:    1 MPPGGGTFGVWLSIFVYRRSQCFVDCPSSTRLAPLATDSSRAFPPPALKMSERTSLLKSSAEPKPVYVVPRTNSISRVTVENVKASPHYGRSQFPSSTGFLERLWPFAYQDTTRYGKIRKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNEFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDILGDKEAAAPATPLSMKGGLGSGIKSGPVVTPAPLTGP 266          
BLAST of EWM23453.1 vs. NCBI_GenBank
Match: gi|585106695|gb|EWM25059.1| (polyphosphate synthetase vtc4 [Nannochloropsis gaditana])

HSP 1 Score: 180.259 bits (456), Expect = 7.467e-53
Identity = 104/201 (51.74%), Postives = 129/201 (64.18%), Query Frame = 0
Query:   51 SERTSLLKSSAEPKPVYVVPRTNSI----------SRVTVENVKASPHYGRSQFPSSTGFLERLWPFAYQ----DTTRYG--------KIRKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNEFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDI 229
             E    L+S  E +P+Y +P +  +           R  +     +PH        +       WPF+      D    G        K+RKAPVKVEPKVFFANERTFLAWLNMSVTL+SISVAILAFADHNEFSQ+YGF +LPVA+ F +YA+ TY +RS MLRNRMPGPYEDR+GP+VLT+LL L+I +N +LK+IDI
Sbjct:    8 QEEKQPLRSGTEIRPIYSIPNSGDLGSGSDAHRNGDRPVITTSAPAPH--------AHSLFGNWWPFSKGRFSGDHDSLGSPSASGARKVRKAPVKVEPKVFFANERTFLAWLNMSVTLSSISVAILAFADHNEFSQVYGFIILPVAICFCVYAMRTYMKRSSMLRNRMPGPYEDRLGPIVLTVLLVLTILINTLLKIIDI 200          
BLAST of EWM23453.1 vs. NCBI_GenBank
Match: gi|1210525322|dbj|GAX15840.1| (hypothetical protein FisN_2Lh439 [Fistulifera solaris])

HSP 1 Score: 150.599 bits (379), Expect = 4.113e-41
Identity = 70/124 (56.45%), Postives = 91/124 (73.39%), Query Frame = 0
Query:  108 AYQDTTRYGKIRKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNE--FSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDI 229
            AY       K+RKAP+K+EPKVFFANERTFLAW+++SV LA  S+AILA AD +E    Q+YG  +LPVA+AF++Y++  Y RR+ M+RNR PGPYED VGP VL ++L +SI   F LK+  I
Sbjct:  105 AYGQIGTLMKLRKAPIKIEPKVFFANERTFLAWMHLSVILAGASIAILAVADDSEGQIGQLYGIVLLPVAIAFIVYSMYQYQRRANMIRNRHPGPYEDTVGPTVLCVMLMISILAQFSLKMYSI 228          
BLAST of EWM23453.1 vs. NCBI_GenBank
Match: gi|1210514299|dbj|GAX26629.1| (hypothetical protein FisN_2Hh439 [Fistulifera solaris])

HSP 1 Score: 150.599 bits (379), Expect = 4.293e-41
Identity = 70/124 (56.45%), Postives = 91/124 (73.39%), Query Frame = 0
Query:  108 AYQDTTRYGKIRKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNE--FSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDI 229
            AY       K+RKAP+K+EPKVFFANERTFLAW+++SV LA  S+AILA AD +E    Q+YG  +LPVA+AF++Y++  Y RR+ M+RNR PGPYED VGP VL ++L +SI   F LK+  I
Sbjct:  105 AYGQIGTLMKLRKAPIKIEPKVFFANERTFLAWMHLSVILAGASIAILAVADDSEGQIGQLYGIVLLPVAIAFIVYSMYQYQRRANMIRNRHPGPYEDTVGPTVLCVMLMISILAQFSLKMYSI 228          
BLAST of EWM23453.1 vs. NCBI_GenBank
Match: gi|1072235234|gb|OEU19963.1| (hypothetical protein FRACYDRAFT_181535 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 144.821 bits (364), Expect = 1.922e-40
Identity = 65/112 (58.04%), Postives = 90/112 (80.36%), Query Frame = 0
Query:  119 RKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNEF-SQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDI 229
            R AP+K+EPKVFFANERTFLAW+++SV LA  SVAILA +D+++   Q+YG  +LPVA+AF++Y++  Y +RS+M+RN++PGPY+D VGP VL ++L  SIT  F +KLI I
Sbjct:    5 RAAPIKIEPKVFFANERTFLAWMHISVILAGASVAILALSDYDDIGKQLYGLIMLPVAIAFLVYSMFQYVKRSYMIRNKLPGPYDDTVGPTVLGIMLMASITAQFAIKLIAI 116          
BLAST of EWM23453.1 vs. NCBI_GenBank
Match: gi|219126180|ref|XP_002183341.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405097|gb|EEC45041.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 141.739 bits (356), Expect = 2.938e-39
Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = 0
Query:  122 PVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFA-DHNEFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDIL 230
            PVK+EPKVFFANERTFLAW+++SV LA  S+AILAF  D+N FSQ+YG  +LPVA++F++Y++  Y RR+ M+R+R PGPYED VGPVVL ++L +SI   F LKL  ++
Sbjct:    1 PVKIEPKVFFANERTFLAWMHLSVVLAGASIAILAFTEDNNPFSQLYGVILLPVAISFIVYSMYQYARRANMIRHRHPGPYEDTVGPVVLGIMLMVSIVAQFSLKLYSMI 110          
BLAST of EWM23453.1 vs. NCBI_GenBank
Match: gi|224001320|ref|XP_002290332.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973754|gb|EED92084.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 129.798 bits (325), Expect = 1.571e-34
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 0
Query:  122 PVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNEFS--QIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKL 226
            PVKVEPKVFFANERTFLAWL++SV LA  SVAI+AF+D    +  Q+YG  +LPV++AF++YA+  Y+RR+ M+R + PGPY D  GP VLT++L LSI   F +KL
Sbjct:    2 PVKVEPKVFFANERTFLAWLHVSVILAGASVAIVAFSDARAATPDQLYGIILLPVSIAFILYAMIQYSRRATMIRRKSPGPYVDIAGPTVLTVILMLSIVAQFTIKL 108          
BLAST of EWM23453.1 vs. NCBI_GenBank
Match: gi|224011539|ref|XP_002295544.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|209583575|gb|ACI64261.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 119.398 bits (298), Expect = 1.186e-30
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 0
Query:  122 PVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHN--EFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDIL 230
            PVKV+PKVFFANERTFLAWL++SV LA  SVAI+AF+D +     Q+YG  +LPV++AF++Y   +Y+RR+ M+R + PGPY D  GP VLT++L  SI   F +KL  ++
Sbjct:    3 PVKVDPKVFFANERTFLAWLHVSVILAGASVAIVAFSDSHAPNSDQLYGVILLPVSIAFILY---SYSRRASMIRRKAPGPYVDIAGPTVLTVILMCSIVAQFSIKLYTLM 110          
BLAST of EWM23453.1 vs. NCBI_GenBank
Match: gi|939401633|emb|CEH12388.1| (vacuolar transporter chaperone 1 [Ceraceosorus bombacis])

HSP 1 Score: 112.079 bits (279), Expect = 1.536e-27
Identity = 55/113 (48.67%), Postives = 80/113 (70.80%), Query Frame = 0
Query:  116 GKIRKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNEFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLID 228
            GK    PV+VEPKVFFANERTFL+WLN +VTL++++  +L F D  +  ++       VA+A ++YAL TY  R+  +RNR  GPY+DR+GP +L++LL +++ VNFIL+  D
Sbjct:   12 GKRIALPVRVEPKVFFANERTFLSWLNFTVTLSALAAGLLNFGD--KVGRVSAAMFSFVAMAIMVYALVTYHWRASAIRNRGTGPYDDRLGPTMLSVLLLIAVVVNFILRFND 122          
BLAST of EWM23453.1 vs. NCBI_GenBank
Match: gi|758985736|ref|XP_011391895.1| (putative VTC complex, subunit protein [Ustilago maydis 521] >gi|757944126|gb|KIS66606.1| putative VTC complex, subunit protein [Ustilago maydis 521])

HSP 1 Score: 111.694 bits (278), Expect = 1.630e-27
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 0
Query:  116 GKIRKAPVKVEPKVFFANERTFLAWLNMSVTLASISVAILAFADHNEFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILK 225
            GK    PV+VEPKVFFANERTFL+WLN +VTL++++  +L F D  +  +I       VA+A +IYAL TY  R+  +RNR  GPY+DR+GP VL+++L +++ VNFIL+
Sbjct:   12 GKRIALPVRVEPKVFFANERTFLSWLNFTVTLSALAAGLLNFGD--KIGRISAAMFSFVAMAIMIYALLTYHWRASAIRNRGSGPYDDRLGPTVLSVMLLIAVLVNFILR 119          
The following BLAST results are available for this feature:
BLAST of EWM23453.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104498|gb|EWM23453.1|0.000e+0100.00protein of unknown function DUF202 [Nannochloropsi... [more]
gi|585106695|gb|EWM25059.1|7.467e-5351.74polyphosphate synthetase vtc4 [Nannochloropsis gad... [more]
gi|1210525322|dbj|GAX15840.1|4.113e-4156.45hypothetical protein FisN_2Lh439 [Fistulifera sola... [more]
gi|1210514299|dbj|GAX26629.1|4.293e-4156.45hypothetical protein FisN_2Hh439 [Fistulifera sola... [more]
gi|1072235234|gb|OEU19963.1|1.922e-4058.04hypothetical protein FRACYDRAFT_181535 [Fragilario... [more]
gi|219126180|ref|XP_002183341.1|2.938e-3960.00predicted protein, partial [Phaeodactylum tricornu... [more]
gi|224001320|ref|XP_002290332.1|1.571e-3458.88predicted protein, partial [Thalassiosira pseudona... [more]
gi|224011539|ref|XP_002295544.1|1.186e-3054.05predicted protein, partial [Thalassiosira pseudona... [more]
gi|939401633|emb|CEH12388.1|1.536e-2748.67vacuolar transporter chaperone 1 [Ceraceosorus bom... [more]
gi|758985736|ref|XP_011391895.1|1.630e-2750.91putative VTC complex, subunit protein [Ustilago ma... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7237rna7237Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications