EWM23455.1, cds7217 (CDS) Nannochloropsis gaditana

Overview
NameEWM23455.1
Unique Namecds7217
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:77971..77973 +
Alignment locationCM002471.1:78149..78360 +
Alignment locationCM002471.1:78589..78673 +
Alignment locationCM002471.1:78839..78961 +
Alignment locationCM002471.1:79148..79246 +
Alignment locationCM002471.1:79488..80068 +
Alignment locationCM002471.1:80293..80428 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23455.1
Productp-type atpase
Orig transcript idgnl|cribi|Naga_100415g5.10372.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:77971..77973 +
CM002471.1supercontigCM002471.1:78149..78360 +
CM002471.1supercontigCM002471.1:78589..78673 +
CM002471.1supercontigCM002471.1:78839..78961 +
CM002471.1supercontigCM002471.1:79148..79246 +
CM002471.1supercontigCM002471.1:79488..80068 +
CM002471.1supercontigCM002471.1:80293..80428 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0009605response to external stimulus
GO:0009607response to biotic stimulus
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR023299ATPase_P-typ_cyto_domN
IPR023214HAD-like_dom
IPR001757P_typ_ATPase
Homology
BLAST of EWM23455.1 vs. NCBI_GenBank
Match: gi|585104500|gb|EWM23455.1| (p-type atpase [Nannochloropsis gaditana])

HSP 1 Score: 824.313 bits (2128), Expect = 0.000e+0
Identity = 412/412 (100.00%), Postives = 412/412 (100.00%), Query Frame = 0
Query:    1 MGRVAVGNTRFLEEVEGVAFSPTAPASFPTRPSPPGNETRGGRGGGRKPLTEIRKALEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFRRFYGVFHLAGVGACSLSHHEHSHIPPIKSFSAVATHARLHAFGR 412
            MGRVAVGNTRFLEEVEGVAFSPTAPASFPTRPSPPGNETRGGRGGGRKPLTEIRKALEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFRRFYGVFHLAGVGACSLSHHEHSHIPPIKSFSAVATHARLHAFGR
Sbjct:    1 MGRVAVGNTRFLEEVEGVAFSPTAPASFPTRPSPPGNETRGGRGGGRKPLTEIRKALEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFRRFYGVFHLAGVGACSLSHHEHSHIPPIKSFSAVATHARLHAFGR 412          
BLAST of EWM23455.1 vs. NCBI_GenBank
Match: gi|585104499|gb|EWM23454.1| (p-type atpase [Nannochloropsis gaditana])

HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:   97 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFR 368
            MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFR
Sbjct:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFR 272          
BLAST of EWM23455.1 vs. NCBI_GenBank
Match: gi|66809993|ref|XP_638720.1| (P-type ATPase [Dictyostelium discoideum AX4] >gi|60467380|gb|EAL65411.1| P-type ATPase [Dictyostelium discoideum AX4])

HSP 1 Score: 211.846 bits (538), Expect = 4.409e-57
Identity = 104/243 (42.80%), Postives = 154/243 (63.37%), Query Frame = 0
Query:    3 RVAVGNTRFLEEVEGVAFSPTAPASFPTRPSPPGNETRGGRGGGRKPLTEIR---KALEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSG 242
             + +GN ++++  EG+++ PT   S P R     +            L+ I    + LE+ G TVV+V  +R+L G +A+SD+ +P+A  T+  L++MGI  WM+TGD+   A A+A  +GI  V A  LP  K+KK+  L+  GH V M+GDGINDSPALA+ADVG+AIG G  +A EAAD++L+ + L D++TA+ L++T F RI+ N LWA  YN++GIP AAG  +P  G  +PP  +G
Sbjct:  665 EIMIGNLKWIKS-EGISYDPTLTIS-PDRSINNNHHHNDDDDDDEGTLSHIEDQVRRLESDGNTVVYVVIDRQLMGYIAISDQLKPEAHATITELNKMGICTWMVTGDNPRTANAIAQQVGIDQVFAEVLPSNKSKKVMELKKMGHTVAMIGDGINDSPALAEADVGIAIGAGTDIAIEAADIVLVKSDLRDVITAISLSKTTFNRIRFNYLWATLYNILGIPLAAGLLIP-FGISIPPMMAG 904          
BLAST of EWM23455.1 vs. NCBI_GenBank
Match: gi|566022738|gb|ETI45649.1| (hypothetical protein F443_09849, partial [Phytophthora parasitica P1569])

HSP 1 Score: 199.519 bits (506), Expect = 9.741e-57
Identity = 95/193 (49.22%), Postives = 137/193 (70.98%), Query Frame = 0
Query:   57 LEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGH-------RVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSG 242
            LE +GKTVV V  E +L G++A++D PRP+AA  +  L  MG+ VW++TGD+   A A+A  +GI HV+A  LPG+KA +I+ALQ++ +        VCM+GDGIND+PALAQ+D+G+AIG G Q+A   AD++L+ ++L D+V AL LAR VF RI+LN  +++ YN +GIP AAG F P++   +PP  +G
Sbjct:  148 LELEGKTVVVVCVENKLVGVIALADAPRPEAAAVIKHLKSMGLDVWLITGDNLRTASAIARQMGISHVKAVALPGEKAAQIKALQSQVNPLTLKPRIVCMVGDGINDAPALAQSDIGMAIGAGTQIAKAEADMVLVKSALTDVVVALDLARVVFSRIKLNFFFSIIYNAVGIPLAAGMFFPLIHRMMPPACAG 340          
BLAST of EWM23455.1 vs. NCBI_GenBank
Match: gi|299117411|emb|CBN73914.1| (heavy metal translocating P-type ATPase [Ectocarpus siliculosus])

HSP 1 Score: 211.075 bits (536), Expect = 1.722e-56
Identity = 104/185 (56.22%), Postives = 134/185 (72.43%), Query Frame = 0
Query:   56 ALEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGI--KHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPP 238
            +LE QGKTVVFVA     +G+LAV+D  RP+A   V  LHRMGI VW++TGD+RA AEAVA  +GI    V AG LP  K++K+Q LQ  G  V M+GDG+NDSPALA ADVG+A+G G QVA EAAD++L+ + L D+V +LHL+R VFRRI++N +WAL YN++ +P AAG   P LG  + P
Sbjct: 1095 SLEWQGKTVVFVAGGGETKGVLAVADSVRPEAREAVGTLHRMGISVWVVTGDNRATAEAVAAIVGIPRGKVMAGVLPADKSRKVQELQRMGQAVAMVGDGVNDSPALAMADVGIAVGAGTQVAVEAADMVLVRSDLRDVVVSLHLSRAVFRRIRMNFVWALSYNVVALPLAAGLLKPWLGLGVTP 1279          
BLAST of EWM23455.1 vs. NCBI_GenBank
Match: gi|567960025|gb|ETK85589.1| (hypothetical protein L915_09653 [Phytophthora parasitica])

HSP 1 Score: 200.29 bits (508), Expect = 1.901e-56
Identity = 95/193 (49.22%), Postives = 138/193 (71.50%), Query Frame = 0
Query:   57 LEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGH-------RVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSG 242
            LE +GKTVV V  E +L G++A++D PRP+AA  +  L  MG+ VW++TGD+   A A+A  +GI HV+A  LPG+KA +I+ALQ++ +        VCM+GDGIND+PALAQ+D+G+AIG G Q+A   AD++L+ ++L D+V AL LAR VF RI+LN  +++ YN++GIP AAG F P++   +PP  +G
Sbjct:  148 LELEGKTVVVVCVENKLVGVIALADAPRPEAAAVIKHLKSMGLDVWLITGDNLRTASAIARQMGISHVKAVALPGEKAAQIKALQSQVNPLTLKPRIVCMVGDGINDAPALAQSDIGMAIGAGTQIAKAEADMVLVKSALTDVVVALDLARVVFSRIKLNFFFSIIYNVVGIPLAAGMFFPLIHRMMPPACAG 340          
BLAST of EWM23455.1 vs. NCBI_GenBank
Match: gi|567988759|gb|ETL39032.1| (hypothetical protein L916_09551 [Phytophthora parasitica] >gi|568017976|gb|ETL92153.1| hypothetical protein L917_09476 [Phytophthora parasitica])

HSP 1 Score: 200.29 bits (508), Expect = 1.928e-56
Identity = 95/193 (49.22%), Postives = 138/193 (71.50%), Query Frame = 0
Query:   57 LEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGH-------RVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSG 242
            LE +GKTVV V  E +L G++A++D PRP+AA  +  L  MG+ VW++TGD+   A A+A  +GI HV+A  LPG+KA +I+ALQ++ +        VCM+GDGIND+PALAQ+D+G+AIG G Q+A   AD++L+ ++L D+V AL LAR VF RI+LN  +++ YN++GIP AAG F P++   +PP  +G
Sbjct:  148 LELEGKTVVVVCVENKLVGVIALADAPRPEAAAVIKHLKSMGLDVWLITGDNLRTASAIARQMGISHVKAVALPGEKAAQIKALQSQVNPLTLKPRIVCMVGDGINDAPALAQSDIGMAIGAGTQIAKAEADMVLVKSALTDVVVALDLARVVFSRIKLNFFFSIIYNVVGIPLAAGMFFPLIHRMMPPACAG 340          
BLAST of EWM23455.1 vs. NCBI_GenBank
Match: gi|570326352|gb|ETO74300.1| (hypothetical protein F444_09942 [Phytophthora parasitica P1976])

HSP 1 Score: 199.134 bits (505), Expect = 5.797e-56
Identity = 95/193 (49.22%), Postives = 137/193 (70.98%), Query Frame = 0
Query:   57 LEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGH-------RVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSG 242
            LE +GKTVV V  E +L G++A++D PRP+AA  +  L  MG+ VW++TGD+   A A+A  +GI HV+A  LPG+KA +I+ALQ++ +        VCM+GDGIND+PALAQ+D+G+AIG G Q+A   AD++L+ ++L D+V AL LAR VF RI+LN  +++ YN +GIP AAG F P++   +PP  +G
Sbjct:  148 LELEGKTVVVVCVENKLVGVIALADAPRPEAAAVIKHLKSMGLDVWLITGDNLRTASAIARQMGISHVKAVALPGEKAAQIKALQSQVNPLTLKPRIVCMVGDGINDAPALAQSDIGMAIGAGTQIAKAEADMVLVKSALTDVVVALDLARVVFSRIKLNFFFSIIYNAVGIPLAAGMFFPLIHRMMPPACAG 340          
BLAST of EWM23455.1 vs. NCBI_GenBank
Match: gi|568017963|gb|ETL92140.1| (hypothetical protein L917_09480 [Phytophthora parasitica] >gi|568048384|gb|ETM45438.1| hypothetical protein L914_09520 [Phytophthora parasitica] >gi|570950181|gb|ETP15438.1| hypothetical protein F441_09800 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 199.134 bits (505), Expect = 5.962e-56
Identity = 95/193 (49.22%), Postives = 137/193 (70.98%), Query Frame = 0
Query:   57 LEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGH-------RVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSG 242
            LE +GKTVV V  E +L G++A++D PRP+AA  +  L  MG+ VW++TGD+   A A+A  +GI HV+A  LPG+KA +I+ALQ++ +        VCM+GDGIND+PALAQ+D+G+AIG G Q+A   AD++L+ ++L D+V AL LAR VF RI+LN  +++ YN +GIP AAG F P++   +PP  +G
Sbjct:  148 LELEGKTVVVVCVENKLVGVIALADAPRPEAAAVIKHLKSMGLDVWLITGDNLRTASAIARQMGISHVKAVALPGEKAAQIKALQSQVNPLTLKPRIVCMVGDGINDAPALAQSDIGMAIGAGTQIAKAEADMVLVKSALTDVVVALDLARVVFSRIKLNFFFSIIYNAVGIPLAAGMFFPLIHRMMPPACAG 340          
BLAST of EWM23455.1 vs. NCBI_GenBank
Match: gi|669165894|ref|XP_008618509.1| (hypothetical protein SDRG_14177 [Saprolegnia diclina VS20] >gi|530729842|gb|EQC28084.1| hypothetical protein SDRG_14177 [Saprolegnia diclina VS20])

HSP 1 Score: 196.823 bits (499), Expect = 1.397e-55
Identity = 108/240 (45.00%), Postives = 151/240 (62.92%), Query Frame = 0
Query:   54 RKALEAQGKTVVFVAAERRLQGLLAVSDKPRPDAARTVAALHRMGIQVWMLTGDSRAAAEAVAHSIGI--KHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGW--RLPPGYSGACSSLPARASRLPRLARDVMCWLT---LSTLPPPFGLSVSPLPPPLQ 286
            R  LE  GKTV+++     +  L+ +SD PRP+A +T+A LH +G+ V+M+TGD+R  A  VA  IG+   HV A  LP  K  K+Q LQA+G  V M+GDGIND+PALAQAD+GVAIG G  +A E A ++L+ + L D+VTAL L+RT++RRIQLN +WA+GYNL+ +P +AG    +  W   +PP ++GA  +  + +     L      W T   ++TLPPP    V    P LQ
Sbjct:  135 RLRLEEAGKTVIYMGICDSVVALIGISDAPRPEAKQTIAHLHALGLDVYMVTGDNRRTAHWVAAQIGLPSHHVMAEVLPANKTAKVQELQAQGRIVAMVGDGINDAPALAQADLGVAIGAGTDIAIETAQMVLMKSKLQDVVTALDLSRTIYRRIQLNFVWAMGYNLVLLPLSAGV---LYHWSVSIPPMFAGAAMAFSSVSVVTSSLLLK---WYTPPNMTTLPPPTPRKVDEKSPLLQ 368          
The following BLAST results are available for this feature:
BLAST of EWM23455.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104500|gb|EWM23455.1|0.000e+0100.00p-type atpase [Nannochloropsis gaditana][more]
gi|585104499|gb|EWM23454.1|0.000e+0100.00p-type atpase [Nannochloropsis gaditana][more]
gi|66809993|ref|XP_638720.1|4.409e-5742.80P-type ATPase [Dictyostelium discoideum AX4] >gi|6... [more]
gi|566022738|gb|ETI45649.1|9.741e-5749.22hypothetical protein F443_09849, partial [Phytopht... [more]
gi|299117411|emb|CBN73914.1|1.722e-5656.22heavy metal translocating P-type ATPase [Ectocarpu... [more]
gi|567960025|gb|ETK85589.1|1.901e-5649.22hypothetical protein L915_09653 [Phytophthora para... [more]
gi|567988759|gb|ETL39032.1|1.928e-5649.22hypothetical protein L916_09551 [Phytophthora para... [more]
gi|570326352|gb|ETO74300.1|5.797e-5649.22hypothetical protein F444_09942 [Phytophthora para... [more]
gi|568017963|gb|ETL92140.1|5.962e-5649.22hypothetical protein L917_09480 [Phytophthora para... [more]
gi|669165894|ref|XP_008618509.1|1.397e-5545.00hypothetical protein SDRG_14177 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7234rna7234Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications