EWM23468.1, cds7203 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM23468.1 vs. NCBI_GenBank
Match: gi|585104530|gb|EWM23468.1| (hypothetical protein Naga_100651g4 [Nannochloropsis gaditana]) HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0 Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
Query: 1 MEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAVRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGMGEMGAELEKMFESFGGMPDMGSMPDMGAGAPGAMPQKEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNRILSRSKTPQSSSVRTGGRQHEEGLGWGRTKERDFTTWLGSSTSVVSSEIRRPRTCAWGEERIEDFRGIIAFSLPESRTFPTSV 287
MEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAVRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGMGEMGAELEKMFESFGGMPDMGSMPDMGAGAPGAMPQKEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNRILSRSKTPQSSSVRTGGRQHEEGLGWGRTKERDFTTWLGSSTSVVSSEIRRPRTCAWGEERIEDFRGIIAFSLPESRTFPTSV
Sbjct: 1 MEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAVRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGMGEMGAELEKMFESFGGMPDMGSMPDMGAGAPGAMPQKEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNRILSRSKTPQSSSVRTGGRQHEEGLGWGRTKERDFTTWLGSSTSVVSSEIRRPRTCAWGEERIEDFRGIIAFSLPESRTFPTSV 287
BLAST of EWM23468.1 vs. NCBI_GenBank
Match: gi|873229275|emb|CEM13719.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 71.2478 bits (173), Expect = 2.652e-10 Identity = 57/210 (27.14%), Postives = 104/210 (49.52%), Query Frame = 0
Query: 1 MEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAVRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGM----GEMGAELEKMFESFGGMPDMGSMPDMGAGAPGAMPQ-------KEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFK 199
M+ A +FMH A NV I+PV+Y G+AP +LE +Y RY L + + + K +++ +F IS +KA+++S + S+ ++ Q G+ M GE G + K+ + + + D A + A+ + ++++ + ++ V+ G L+EQD E +R+A K+ G D + M E+ PE +E + K
Sbjct: 372 MDSAAHLFMHFASNVN-ITPVVYSGRAPRNRLESLYLRYTLACLDGNDEDRDDTKVDQLRVIFGISERKAQQLSEQAWRSR------MQAQMPGAGDLMKLMSGEGGGDFNKLMQQLQEGGGLEGLGDDDAESLEALAKLTKDFDWRQVEPLMREIQEVMTSGELTEQDKENMREAWKATGADFGQIPDEM---LRELSPEQREFFETMK 571
BLAST of EWM23468.1 vs. NCBI_GenBank
Match: gi|375332107|gb|AFA52593.1| (hypothetical protein [Vaucheria litorea]) HSP 1 Score: 65.4698 bits (158), Expect = 2.170e-8 Identity = 57/208 (27.40%), Postives = 104/208 (50.00%), Query Frame = 0
Query: 1 MEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAV----RIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGMGEMGAELEKMFESFGGMPDMGSMPDMGAGAPGAMPQKEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNR 204
M+ +G +F V P + P+ Y G + ++LE IY+ +L S + +++ + I++L I KA+ I K + D + M+ K G G +M A L+ + + G P+M S P EM+ LE+ K +V+ G ++E++++ELR+ K G+D++ LV+ EG M + +EL + +Q L++
Sbjct: 225 MKVSGSVFEAVCPGIVLDPPLRYNGGSKKKQLEEIYA-----SLSASISSENSEELMSFQKEIRDLLGIKEFKAKAIEQKAM--MDALQNMV-KDGGGDGSSQEQMAALLQNIGANGGPEPEMPSGP-------------EMEAQLESFKNLVKGGQVTEEEVKELRKMYKEMGMDIDKLVKESEGNEGMMDAQGRELFDLLRQMLSQ 411
BLAST of EWM23468.1 vs. NCBI_GenBank
Match: gi|546318865|ref|XP_005716866.1| (unnamed protein product [Chondrus crispus] >gi|507113417|emb|CDF37047.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 61.6178 bits (148), Expect = 4.101e-7 Identity = 50/182 (27.47%), Postives = 96/182 (52.75%), Query Frame = 0
Query: 33 EMIYSRYCQYALVEDASGQGNDKA-VRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAG-GEGMGEMGAE--LEKMFESFGGMPDMGSMPDMGAGAPGAMPQKEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNRILSRSK 210
E +Y RY + L + + + ++ V +Q L +++ +AE I+++I M + A +G + G+ LEK+ +SFG D GS A M + + + +L+ ++Q+ G+S+ D+ ELR+ CK GVD++++++ + L + PE++E F ++L +LS SK
Sbjct: 354 EELYRRYAVFCLSSEERVKDDLQSLVDMQTLLAVTDARAETINTEIAKG------MFQVAVSAAMADGSLDPGSRDALEKLKQSFGDFLDGGS-------ADSIMSEVAVMRAMYSLQQLLQEQGVSDDDVLELRKMCKELGVDIDEMLQNADTLGDALGPEAKE----FVESLRGLLSDSK 518 The following BLAST results are available for this feature:
BLAST of EWM23468.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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