EWM23468.1, cds7203 (CDS) Nannochloropsis gaditana

Overview
NameEWM23468.1
Unique Namecds7203
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:44835..44864 +
Alignment locationCM002471.1:45161..45243 +
Alignment locationCM002471.1:45446..45568 +
Alignment locationCM002471.1:45821..45897 +
Alignment locationCM002471.1:46097..46200 +
Alignment locationCM002471.1:46284..46346 +
Alignment locationCM002471.1:46494..46557 +
Alignment locationCM002471.1:46764..46832 +
Alignment locationCM002471.1:46928..47009 +
Alignment locationCM002471.1:47097..47265 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23468.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100651g4.738.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:44835..44864 +
CM002471.1supercontigCM002471.1:45161..45243 +
CM002471.1supercontigCM002471.1:45446..45568 +
CM002471.1supercontigCM002471.1:45821..45897 +
CM002471.1supercontigCM002471.1:46097..46200 +
CM002471.1supercontigCM002471.1:46284..46346 +
CM002471.1supercontigCM002471.1:46494..46557 +
CM002471.1supercontigCM002471.1:46764..46832 +
CM002471.1supercontigCM002471.1:46928..47009 +
CM002471.1supercontigCM002471.1:47097..47265 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23468.1 vs. NCBI_GenBank
Match: gi|585104530|gb|EWM23468.1| (hypothetical protein Naga_100651g4 [Nannochloropsis gaditana])

HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
Query:    1 MEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAVRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGMGEMGAELEKMFESFGGMPDMGSMPDMGAGAPGAMPQKEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNRILSRSKTPQSSSVRTGGRQHEEGLGWGRTKERDFTTWLGSSTSVVSSEIRRPRTCAWGEERIEDFRGIIAFSLPESRTFPTSV 287
            MEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAVRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGMGEMGAELEKMFESFGGMPDMGSMPDMGAGAPGAMPQKEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNRILSRSKTPQSSSVRTGGRQHEEGLGWGRTKERDFTTWLGSSTSVVSSEIRRPRTCAWGEERIEDFRGIIAFSLPESRTFPTSV
Sbjct:    1 MEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAVRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGMGEMGAELEKMFESFGGMPDMGSMPDMGAGAPGAMPQKEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNRILSRSKTPQSSSVRTGGRQHEEGLGWGRTKERDFTTWLGSSTSVVSSEIRRPRTCAWGEERIEDFRGIIAFSLPESRTFPTSV 287          
BLAST of EWM23468.1 vs. NCBI_GenBank
Match: gi|873229275|emb|CEM13719.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 71.2478 bits (173), Expect = 2.652e-10
Identity = 57/210 (27.14%), Postives = 104/210 (49.52%), Query Frame = 0
Query:    1 MEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAVRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGM----GEMGAELEKMFESFGGMPDMGSMPDMGAGAPGAMPQ-------KEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFK 199
            M+ A  +FMH A NV  I+PV+Y G+AP  +LE +Y RY    L  +   + + K  +++ +F IS +KA+++S +   S+      ++ Q    G+ M    GE G +  K+ +       +  + D  A +  A+ +       ++++  +  ++ V+  G L+EQD E +R+A K+ G D   +   M     E+ PE +E  +  K
Sbjct:  372 MDSAAHLFMHFASNVN-ITPVVYSGRAPRNRLESLYLRYTLACLDGNDEDRDDTKVDQLRVIFGISERKAQQLSEQAWRSR------MQAQMPGAGDLMKLMSGEGGGDFNKLMQQLQEGGGLEGLGDDDAESLEALAKLTKDFDWRQVEPLMREIQEVMTSGELTEQDKENMREAWKATGADFGQIPDEM---LRELSPEQREFFETMK 571          
BLAST of EWM23468.1 vs. NCBI_GenBank
Match: gi|375332107|gb|AFA52593.1| (hypothetical protein [Vaucheria litorea])

HSP 1 Score: 65.4698 bits (158), Expect = 2.170e-8
Identity = 57/208 (27.40%), Postives = 104/208 (50.00%), Query Frame = 0
Query:    1 MEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAV----RIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGMGEMGAELEKMFESFGGMPDMGSMPDMGAGAPGAMPQKEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNR 204
            M+ +G +F  V P +    P+ Y G +  ++LE IY+     +L    S + +++ +     I++L  I   KA+ I  K +   D +  M+ K  G  G    +M A L+ +  + G  P+M S P             EM+  LE+ K +V+ G ++E++++ELR+  K  G+D++ LV+  EG    M  + +EL  + +Q L++
Sbjct:  225 MKVSGSVFEAVCPGIVLDPPLRYNGGSKKKQLEEIYA-----SLSASISSENSEELMSFQKEIRDLLGIKEFKAKAIEQKAM--MDALQNMV-KDGGGDGSSQEQMAALLQNIGANGGPEPEMPSGP-------------EMEAQLESFKNLVKGGQVTEEEVKELRKMYKEMGMDIDKLVKESEGNEGMMDAQGRELFDLLRQMLSQ 411          
BLAST of EWM23468.1 vs. NCBI_GenBank
Match: gi|546318865|ref|XP_005716866.1| (unnamed protein product [Chondrus crispus] >gi|507113417|emb|CDF37047.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 61.6178 bits (148), Expect = 4.101e-7
Identity = 50/182 (27.47%), Postives = 96/182 (52.75%), Query Frame = 0
Query:   33 EMIYSRYCQYALVEDASGQGNDKA-VRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAG-GEGMGEMGAE--LEKMFESFGGMPDMGSMPDMGAGAPGAMPQKEMQETLEALKAVVQQGGLSEQDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNRILSRSK 210
            E +Y RY  + L  +   + + ++ V +Q L  +++ +AE I+++I         M +    A   +G  + G+   LEK+ +SFG   D GS       A   M +  +   + +L+ ++Q+ G+S+ D+ ELR+ CK  GVD++++++  + L   + PE++E    F ++L  +LS SK
Sbjct:  354 EELYRRYAVFCLSSEERVKDDLQSLVDMQTLLAVTDARAETINTEIAKG------MFQVAVSAAMADGSLDPGSRDALEKLKQSFGDFLDGGS-------ADSIMSEVAVMRAMYSLQQLLQEQGVSDDDVLELRKMCKELGVDIDEMLQNADTLGDALGPEAKE----FVESLRGLLSDSK 518          
The following BLAST results are available for this feature:
BLAST of EWM23468.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585104530|gb|EWM23468.1|0.000e+0100.00hypothetical protein Naga_100651g4 [Nannochloropsi... [more]
gi|873229275|emb|CEM13719.1|2.652e-1027.14unnamed protein product [Vitrella brassicaformis C... [more]
gi|375332107|gb|AFA52593.1|2.170e-827.40hypothetical protein [Vaucheria litorea][more]
gi|546318865|ref|XP_005716866.1|4.101e-727.47unnamed protein product [Chondrus crispus] >gi|507... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7220rna7220Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications