EWM23477.1, cds7195 (CDS) Nannochloropsis gaditana

Overview
NameEWM23477.1
Unique Namecds7195
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:22177..22254 -
Alignment locationCM002471.1:21989..22020 -
Alignment locationCM002471.1:18963..21702 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23477.1
ProductZn(2)-C6 fungal-type DNA-binding domain protein
Orig transcript idgnl|cribi|Naga_100262g2.3183.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:22177..22254 -
CM002471.1supercontigCM002471.1:21989..22020 -
CM002471.1supercontigCM002471.1:18963..21702 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
BLAST of EWM23477.1 vs. NCBI_GenBank
Match: gi|585104545|gb|EWM23477.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1959.11 bits (5074), Expect = 0.000e+0
Identity = 949/949 (100.00%), Postives = 949/949 (100.00%), Query Frame = 0
Query:    1 MDTQKKYQDLGTSSKNKSCQKCYDSKSKCDFSLPCERCFRLNLPCRPRVRGSMTHSASKRTRGCSKSALGDEATGSPCWPPQESLPRLGGPGKAPRVGQEGRQWAGRDSYTSTEAASEDGEEDEGEGCQPEGSNAYRRDCAWGLLLERARYDFQRSMGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHREGMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWELRYRRRNKVFNRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEELMAVEAGAARLKASSLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLDPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPEGGSSREGVPPRERLLYSEFLKIFSRDGHVRLYWARLAQLEATTREGEEEKLHFLLWMEPVPASRYITDRPEKATHSKTKLFKRRPHPKIGSSSLTVAADGEMMGERPLEQDVPEGQKGNGDSSGCGERQQVAQQKSGPPILLFPALASVPLPPGVTLPSFPSSWTISTDQARTGRQAAAFSPSCFPPLASPSPFTLHSSDSSPQPLASTLPHIFEIKSEFIRDLLRTAHKSVPAAKAHGKDTVTNSVIDAECKRVTNKQKVRRNKFLLSKISRSQEQNEVREIFRTTAGPKHLPPQHEQQQEEQKQEQPQKRQQQQQQQQPPPPGQPQEQQMPIFPFSKSSHCLPSGMSIGWEMEQQCQRHPLVFLHAHQKICSGGEHPPPFGQTNQEYDLNVGAFMLSPAAMSNDQQLNEHHVTQIRNHEAWYPASVGAKRRQYAEKQEHFRENFQYVDVNSQESNEEHRQPFLRRQFQHELEQGCSMSCWPPSTPWQRVQSRPTQQEEHRQPLSSIPHSKSRLGTGLFLLSMAAAQSNCDV 949
            MDTQKKYQDLGTSSKNKSCQKCYDSKSKCDFSLPCERCFRLNLPCRPRVRGSMTHSASKRTRGCSKSALGDEATGSPCWPPQESLPRLGGPGKAPRVGQEGRQWAGRDSYTSTEAASEDGEEDEGEGCQPEGSNAYRRDCAWGLLLERARYDFQRSMGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHREGMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWELRYRRRNKVFNRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEELMAVEAGAARLKASSLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLDPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPEGGSSREGVPPRERLLYSEFLKIFSRDGHVRLYWARLAQLEATTREGEEEKLHFLLWMEPVPASRYITDRPEKATHSKTKLFKRRPHPKIGSSSLTVAADGEMMGERPLEQDVPEGQKGNGDSSGCGERQQVAQQKSGPPILLFPALASVPLPPGVTLPSFPSSWTISTDQARTGRQAAAFSPSCFPPLASPSPFTLHSSDSSPQPLASTLPHIFEIKSEFIRDLLRTAHKSVPAAKAHGKDTVTNSVIDAECKRVTNKQKVRRNKFLLSKISRSQEQNEVREIFRTTAGPKHLPPQHEQQQEEQKQEQPQKRQQQQQQQQPPPPGQPQEQQMPIFPFSKSSHCLPSGMSIGWEMEQQCQRHPLVFLHAHQKICSGGEHPPPFGQTNQEYDLNVGAFMLSPAAMSNDQQLNEHHVTQIRNHEAWYPASVGAKRRQYAEKQEHFRENFQYVDVNSQESNEEHRQPFLRRQFQHELEQGCSMSCWPPSTPWQRVQSRPTQQEEHRQPLSSIPHSKSRLGTGLFLLSMAAAQSNCDV
Sbjct:    1 MDTQKKYQDLGTSSKNKSCQKCYDSKSKCDFSLPCERCFRLNLPCRPRVRGSMTHSASKRTRGCSKSALGDEATGSPCWPPQESLPRLGGPGKAPRVGQEGRQWAGRDSYTSTEAASEDGEEDEGEGCQPEGSNAYRRDCAWGLLLERARYDFQRSMGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHREGMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWELRYRRRNKVFNRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEELMAVEAGAARLKASSLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLDPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPEGGSSREGVPPRERLLYSEFLKIFSRDGHVRLYWARLAQLEATTREGEEEKLHFLLWMEPVPASRYITDRPEKATHSKTKLFKRRPHPKIGSSSLTVAADGEMMGERPLEQDVPEGQKGNGDSSGCGERQQVAQQKSGPPILLFPALASVPLPPGVTLPSFPSSWTISTDQARTGRQAAAFSPSCFPPLASPSPFTLHSSDSSPQPLASTLPHIFEIKSEFIRDLLRTAHKSVPAAKAHGKDTVTNSVIDAECKRVTNKQKVRRNKFLLSKISRSQEQNEVREIFRTTAGPKHLPPQHEQQQEEQKQEQPQKRQQQQQQQQPPPPGQPQEQQMPIFPFSKSSHCLPSGMSIGWEMEQQCQRHPLVFLHAHQKICSGGEHPPPFGQTNQEYDLNVGAFMLSPAAMSNDQQLNEHHVTQIRNHEAWYPASVGAKRRQYAEKQEHFRENFQYVDVNSQESNEEHRQPFLRRQFQHELEQGCSMSCWPPSTPWQRVQSRPTQQEEHRQPLSSIPHSKSRLGTGLFLLSMAAAQSNCDV 949          
BLAST of EWM23477.1 vs. NCBI_GenBank
Match: gi|585100154|gb|EWM20491.1| (hypothetical protein Naga_100382g3 [Nannochloropsis gaditana])

HSP 1 Score: 877.085 bits (2265), Expect = 0.000e+0
Identity = 510/830 (61.45%), Postives = 596/830 (71.81%), Query Frame = 0
Query:  157 MGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHREGMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWELRYRRRNKVFNRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEE-LMAVEAGAARLKASSLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLDPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPEGGSSREGVPPRERLLYSEFLKIFSRDGHVRLYWARLAQLEATTREGEEEKLHFLLWMEPVPASRYITDRPEKATHSKTKLFKRRPHPKIGSSS------LTVAADGEMMGERPLE-QDVPEG-QKGNGDSSGCGERQQVAQQKSGPPILLFPALASVPLPPGVTLPSFPSSWTISTDQARTGRQAAAFSPSCF--PPLA----SPS-PFTLHSSDSSPQPLASTLPHIFEIKSEFIRDLLRTAHKSVPAAKAHGKDTVTNSVIDAECKRVTNKQKVRRNKFLLSKISRSQEQNEVREIFRTTAGPKHLPPQHE--QQQEEQKQEQPQKRQQQQQQQQPPPPGQPQEQQMPIFPFSKSSHCLPSGMSIGWEMEQQCQRHPLVFLHAHQKICSGGEHPPPFGQTNQEYDLNVGAFMLSPAAMSNDQ-----------------------QLNEHHVTQIRNHEAWYPASVGAKRRQYAEKQEHFRENFQYVDVNSQESNEEHRQPFLRRQF-QHELEQGCSMSCWPPSTPWQRVQSRPTQQEEHRQPLSSIPHSKSRLGTGLFLLSMAAAQ 944
            M TQ   EE   K Q S ASAS+EEE DG GQSLL TILERVDR RMAE+FLDAFHAVQRRG +HREGMVGMLRHWKKLSDL+G+DLTLG+GAAIA A  VE WEL+YR  + V  RSES  G+ SLG   T NS QG+LSSKRF T V+EGP GLLLEE L AVEAGAARLKAS LFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCL+PFLFAAFVAHSDRDTWFRMNLEALCSPRFRPE G  R+GVP RERLLYSEFLKIFSRDGHVRLYWARLAQLE + REGEEEK+HFLLWMEPVPASRYITDRPEK T SKT LF++RP  + GS S           +GE +G RPL+ QD  E  +KG+G SSGCGERQQVA QK  PP L FPALASVPLPPG +LPS PSSWT++TDQ R G      SPS F  PP      SPS P + +  DS   P++STLP +FEIKS+FI+ LL    K+  A K+HG+ TVTN V+D +CK +T ++  R+     SKIS ++ + + + +F+ TA PKH P  H+  QQQE Q Q+Q Q++QQ+QQ      PG PQ+Q M +FP S+SS  LPS + +  EMEQQ QRHP +F H +Q  C G +    F QT+Q +DLNV A +L P AM N+Q                       + ++ H T I NHEA Y    G +RR  A++ E  R  +++ D++S+E  ++H QP+L+RQ  QHE E G S SCWPPSTPWQ  QS+P QQ EH    S IPHS +++GTGLFLLSMAAAQ
Sbjct:    1 METQALEEELLTKGQTSGASASEEEEGDGKGQSLLGTILERVDRPRMAEQFLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDLTLGIGAAIANALKVEAWELQYRGGDTV-KRSESWTGDSSLGIIHTPNSFQGRLSSKRFPTTVEEGPMGLLLEEELAAVEAGAARLKASPLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLEPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPERGRRRDGVPRRERLLYSEFLKIFSRDGHVRLYWARLAQLEVSMREGEEEKMHFLLWMEPVPASRYITDRPEKTTQSKTTLFRQRPSAETGSLSREAREVCASVGEGEELGWRPLKLQDFSETEEKGDGASSGCGERQQVALQKRSPPSLFFPALASVPLPPGTSLPSLPSSWTVNTDQTRAGPPPGFLSPSGFPTPPFLFRSYSPSHPSSRYPLDSPAFPISSTLPDMFEIKSDFIKGLLPADPKTGLAGKSHGESTVTNPVVDVKCKHITKREMQRKK----SKISCARNEGKAQGVFQVTAEPKHSPKHHKEQQQQERQLQQQQQQQQQEQQNHHQQQPGLPQQQHMSVFPISRSSQYLPSSIDMKGEMEQQYQRHPSIFFHTYQDPCWGVKDHQVFRQTHQGHDLNVDASILPPVAMLNEQQLDKQQKQLILRLFSHAHREHHYKQHKQHTTYIENHEACYLPLDGRERRHNADENEDLRGAYRHWDIHSEEIYDDHLQPYLQRQLQQHEQEHGWSTSCWPPSTPWQGGQSQPIQQGEHGHSPSPIPHSTTKVGTGLFLLSMAAAQ 825          
BLAST of EWM23477.1 vs. NCBI_GenBank
Match: gi|553187661|ref|XP_005854653.1| (hypothetical protein NGA_0196000, partial [Nannochloropsis gaditana CCMP526] >gi|422294410|gb|EKU21710.1| hypothetical protein NGA_0196000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 484.567 bits (1246), Expect = 1.480e-162
Identity = 238/240 (99.17%), Postives = 238/240 (99.17%), Query Frame = 0
Query:   89 GGPGKAPRVGQEGRQWAGRDSYTSTEAASEDGEEDEGEGCQPEGSNAYRRDCAWGLLLERARYDFQRSMGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHREGMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWELRYRRRNKVFNRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEELMAVEAGAARLK 328
            GGPGKAPRVGQEGRQWAGRDSYTSTEAASEDGEEDEGEGCQPEGSNAYRRDCAWGLLLERARYDFQRSMGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHR GMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWELRYRRRNKV NRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEELMAVEAGAARLK
Sbjct:    6 GGPGKAPRVGQEGRQWAGRDSYTSTEAASEDGEEDEGEGCQPEGSNAYRRDCAWGLLLERARYDFQRSMGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHRGGMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWELRYRRRNKVINRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEELMAVEAGAARLK 245          
BLAST of EWM23477.1 vs. NCBI_GenBank
Match: gi|553186124|ref|XP_005854365.1| (hypothetical protein NGA_0167300, partial [Nannochloropsis gaditana CCMP526] >gi|422294693|gb|EKU21993.1| hypothetical protein NGA_0167300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 78.1814 bits (191), Expect = 1.440e-14
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0
Query:    1 MDTQKKYQDLGTSSKNKSCQKCYDSKSKCDFSLPCER 37
            MDTQKKYQDLGTSSKNKSCQKCYDSKSKCDFSLPCER
Sbjct:    1 MDTQKKYQDLGTSSKNKSCQKCYDSKSKCDFSLPCER 37          
BLAST of EWM23477.1 vs. NCBI_GenBank
Match: gi|585100606|gb|EWM20744.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 79.337 bits (194), Expect = 1.664e-11
Identity = 82/331 (24.77%), Postives = 132/331 (39.88%), Query Frame = 0
Query:  191 LETILERVDRSRMAEEFLDAFHAVQRRGTVHREGMVGMLRHWKKLSDLSGQDL--TLGVGAAIAKAFHVEQWELRYRRRNKVFNRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEELMAVEAGAARLKASSLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLDPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPEGGSSREGVPPRERLLYSEFLKIFSRDGHVRLYWARLAQLEATTREGEEEKLHFLLWMEPVPASRYITDRPEKATHSKTKLFKRRPHP-KIGSSSLTVAADGEM 518
            L+ ++ER D   M   +L AF  + + G ++R+  +G+L+ W  L  +   D   T G  A +  AF +   EL                    L   P  ++ +G+L + R    + E               GA  L+ + + R+ ++    + +  +D  +  VI  SN+A+   F  P   + +   R CL  FLFAA VA  DR  +F++   A  S                   +  + FLKIF R G + LY +         + G  E     +  EP P SR++T RP+      T       HP    S+S+   A G+M
Sbjct:  173 LDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELE---------------DPECLAYEPPLHAEKGRLWAARADRVLGE---------------GAKHLEENLVCRQANNSSRAVYMARMDCKDQWVI--SNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSL----------------MKRTAFLKIFDRQGRMTLYLSD----HQVVKMGPNEYASLCV-TEPAPPSRHVTTRPDVTRLRSTH------HPCNSSSASMFRVASGDM 444          
The following BLAST results are available for this feature:
BLAST of EWM23477.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585104545|gb|EWM23477.1|0.000e+0100.00Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
gi|585100154|gb|EWM20491.1|0.000e+061.45hypothetical protein Naga_100382g3 [Nannochloropsi... [more]
gi|553187661|ref|XP_005854653.1|1.480e-16299.17hypothetical protein NGA_0196000, partial [Nannoch... [more]
gi|553186124|ref|XP_005854365.1|1.440e-14100.00hypothetical protein NGA_0167300, partial [Nannoch... [more]
gi|585100606|gb|EWM20744.1|1.664e-1124.77Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7212rna7212Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications