EWM29946.1, cds719 (CDS) Nannochloropsis gaditana

Overview
NameEWM29946.1
Unique Namecds719
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:258436..258763 -
Alignment locationCM002456.1:257946..258166 -
Alignment locationCM002456.1:257377..257747 -
Alignment locationCM002456.1:256590..256595 -
Alignment locationCM002456.1:256242..256359 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29946.1
Productformin 2 domain containing protein
Orig transcript idgnl|cribi|Naga_100247g1.2329.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:258436..258763 -
CM002456.1supercontigCM002456.1:257946..258166 -
CM002456.1supercontigCM002456.1:257377..257747 -
CM002456.1supercontigCM002456.1:256590..256595 -
CM002456.1supercontigCM002456.1:256242..256359 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR014020Tensin_C2-dom
IPR029021Prot-tyrosine_phosphatase-like
Homology
BLAST of EWM29946.1 vs. NCBI_GenBank
Match: gi|585112534|gb|EWM29946.1| (formin 2 domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0
Query:    1 MGPPTPESVALLKDRFPNRYMVWNLSNEASHRIAPALQGQLCDFHWSAPGKSQNPALHSLFGLCYAIHAWLSLAPTHAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKRCKALFEDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWNADSVKVYSSLTAPAASKSWEEETGLYREVEARLLGDFVLIGRFGGKYGHDEHDASKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMELEFERLGPGLSAGLDDSATTLRLWEALPEKVTGWTPTGCKASFPGHNPPPPPARGEERREQEGRTYRPRRC 347
            MGPPTPESVALLKDRFPNRYMVWNLSNEASHRIAPALQGQLCDFHWSAPGKSQNPALHSLFGLCYAIHAWLSLAPTHAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKRCKALFEDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWNADSVKVYSSLTAPAASKSWEEETGLYREVEARLLGDFVLIGRFGGKYGHDEHDASKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMELEFERLGPGLSAGLDDSATTLRLWEALPEKVTGWTPTGCKASFPGHNPPPPPARGEERREQEGRTYRPRRC
Sbjct:    1 MGPPTPESVALLKDRFPNRYMVWNLSNEASHRIAPALQGQLCDFHWSAPGKSQNPALHSLFGLCYAIHAWLSLAPTHAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKRCKALFEDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWNADSVKVYSSLTAPAASKSWEEETGLYREVEARLLGDFVLIGRFGGKYGHDEHDASKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMELEFERLGPGLSAGLDDSATTLRLWEALPEKVTGWTPTGCKASFPGHNPPPPPARGEERREQEGRTYRPRRC 347          
BLAST of EWM29946.1 vs. NCBI_GenBank
Match: gi|553176187|ref|XP_005852360.1| (formin like protein [Nannochloropsis gaditana CCMP526] >gi|422296168|gb|EKU23467.1| formin like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 356.295 bits (913), Expect = 2.531e-121
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:  134 MVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWNADSVKVYSSLTAPAASKSWEEETGLYREVEARLLGDFVLIGRFGGKYGHDEHDASKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMELEFERLGPGLSAGLDDSATTLRLWEALPEKV 307
            MVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWNADSVKVYSSLTAPAASKSWEEETGLYREVEARLLGDFVLIGRFGGKYGHDEHDASKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMELEFERLGPGLSAGLDDSATTLRLWEALPEKV
Sbjct:    1 MVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWNADSVKVYSSLTAPAASKSWEEETGLYREVEARLLGDFVLIGRFGGKYGHDEHDASKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMELEFERLGPGLSAGLDDSATTLRLWEALPEKV 174          
BLAST of EWM29946.1 vs. NCBI_GenBank
Match: gi|224007299|ref|XP_002292609.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971471|gb|EED89805.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 193.356 bits (490), Expect = 3.694e-51
Identity = 104/253 (41.11%), Postives = 150/253 (59.29%), Query Frame = 0
Query:   52 SQNPALHSLFGLCYAIHAWLSLAP---THAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKR----------------CKALFEDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVW-NADSVK--VYSSLTAPAASKSWEEETGLYREVEARLLGDFVLIGRFGGKYGHDEHDASKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMELEFERL 282
            SQ PA+  +  +CYAIHA+LS+A    +  A V+C NGKTRTG+VVAC LR+  QV  ++ GF+LFC +R                  +   D+   IPP++  FF +FDE   L  +P+  PL L SVR+ GVPV+D+PC+D+W + D V+  VYSS    + ++ W++E G Y  +   L  DF L+ RFGGK+  D  D +K+LFRYV  + FL    + L   + D+M+RY  +F+ED F M  +FE +
Sbjct:  980 SQTPAVSRVLEICYAIHAYLSIASNSTSAVACVYCSNGKTRTGVVVACYLRFTNQVSKSMIGFELFCERRGIIPGLSSSKNANNTSMSSENVDMAGHIPPSLRQFFHNFDEVLMLNRYPHPEPLLLQSVRLQGVPVDDMPCVDIWEHGDVVRHLVYSSHDDTSLNE-WDDEEGSY-SIGQILKRDFTLVCRFGGKFASDSDDPTKVLFRYVNSSKFLRGERIVLNMGSVDMMRRYADSFDEDDFVMTFDFESV 1230          
BLAST of EWM29946.1 vs. NCBI_GenBank
Match: gi|1210524154|dbj|GAX16883.1| (hypothetical protein FisN_5Hh256 [Fistulifera solaris])

HSP 1 Score: 179.489 bits (454), Expect = 9.049e-48
Identity = 111/310 (35.81%), Postives = 158/310 (50.97%), Query Frame = 0
Query:    5 TPESVA--LLKDRFPNRYMVWNL-SNEASHRIAPALQGQLCDFHW--SAPGKSQNPALHSLFGLCYAIHAWLSLA--------------PTHAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKRC---KALFEDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWNADSVKVYSS---------LTAPAASK---SWEEETGLYREVEARLLGDFVLIGRFGGKYGHDEHDASKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMELEFE 280
            TP S+A  L K      Y++++L  ++A       L+ Q+    W  S    S+ P +  L  +CYA HAWL++               P H A ++C NGKTRT I +AC L++  QV    +GF LF  KRC   +     V   +P ++  FF +FD   +L  + N+ PL L S+ + G+PVE+ PC++++NA    VYSS         +T P A +    WEEE G +  V   L GDF L+ RFGG Y  D  D SKI+FRY   T FL  G ++LR D  D+M+RY    +   F   + FE
Sbjct:  144 TPHSLAKFLNKKHGEGNYLLFSLCDDQADDSTLFHLRRQIVQLPWKLSRDNASELPTVPLLLNICYAFHAWLNMEDISNGNVGHSSLKRPQHVAVIYCPNGKTRTAIAIACYLKFTGQVDKTEDGFLLFLEKRCPDSELSPATVAKALPASIRTFFRNFDSTIELKRYMNQQPLLLRSIVMRGLPVEEKPCLNIFNAQGDHVYSSHPDLFGDISVTNPYAQQDRSQWEEEEGFF-PVNQILDGDFYLLCRFGGHYAGDLSDPSKIIFRYANTTGFLGAGPIDLRCDRVDLMRRYAHLIDCKEFLFTMSFE 452          
BLAST of EWM29946.1 vs. NCBI_GenBank
Match: gi|970658094|gb|KUF95900.1| (hypothetical protein AM588_10008425 [Phytophthora nicotianae])

HSP 1 Score: 161.384 bits (407), Expect = 1.097e-42
Identity = 99/280 (35.36%), Postives = 147/280 (52.50%), Query Frame = 0
Query:   20 YMVWNL-------SNEASHRIAPALQGQLCDFHWSAPG-KSQNPALHSLFGLCYAIHAWLSLAPTHAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKR--CKALF-EDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWN-------ADSVKVYSSLTAPAASKSWEEETGLYR---EVEARLLGDFVLIGRFGGKYGHDEHDA-SKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMEL 277
            +M++NL       +++    +A  L  QL +F+W   G K+  P L  +F +CYA+ AWLSL P H A V C  GKTR+G+VVAC L +        + F  F  KR   K+L    +K K PP++  F + F E     + PN  PL L +V    +PVE  PC+ +W+        D +++  +  AP     W EE G +    E    L G F ++  FG  Y  D+ DA S++LFRY   T FL  G+V L+K   D+M++Y+  F+ED F+++L
Sbjct:   77 FMLFNLNALEDAAADDGRQSVADKLHEQLLEFNWERDGMKAHTPPLDLIFRICYALDAWLSLDPQHVALVNCQTGKTRSGVVVACYLLFARLADDPTDAFVEFYRKRWDMKSLTPHALKKKTPPSIQRFLTGFHELLAQQKPPNAKPLLLKAVIFRQLPVELQPCVQIWDDYKLVFCTDELQIGENGEAPVL--DWNEEDGFFAILWENGIELDGGFSILCSFGEDYDADDVDASSRVLFRYADSTLFLVPGLVTLKKHDLDLMKQYEHGFDEDQFSVDL 354          
BLAST of EWM29946.1 vs. NCBI_GenBank
Match: gi|1210527213|dbj|GAX13848.1| (hypothetical protein FisN_5Lh256 [Fistulifera solaris])

HSP 1 Score: 155.221 bits (391), Expect = 1.745e-41
Identity = 85/219 (38.81%), Postives = 119/219 (54.34%), Query Frame = 0
Query:   77 HAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKRC---KALFEDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWNADSVKVYSS---------LTAPAASKS---WEEETGLYREVEARLLGDFVLIGRFGGKYGHDEHDASKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMELEFE 280
            H   ++C NGKTRT I +AC L++  QV    +GF LF  +RC   +     V   +P ++  FF +FD    L  + N+ PL L S+ + G+PVE+ PC++++NA    VYSS         +T P A +    WEEE G +  V   L GDF L+ RFGG Y  D  D SKI+FRY   T+FL  G + LR D  D+M+RY    +   F + + FE
Sbjct:   19 HVGVIYCPNGKTRTAIAIACYLKFTGQVDKTEDGFLLFLEQRCPDSELSPATVAKALPASIRTFFRNFDSTIKLKRYMNQQPLLLRSIVMRGLPVEEKPCLNIFNAQGDHVYSSHPDLFGDISVTNPYAQQDPGHWEEEEGFF-PVNQILEGDFYLLCRFGGHYADDLSDPSKIIFRYANTTSFLGAGPIHLRCDRVDLMRRYAHLIDYKEFLLSMTFE 236          
BLAST of EWM29946.1 vs. NCBI_GenBank
Match: gi|970663927|gb|KUG00975.1| (Formin-y 2 domain-containing protein [Phytophthora nicotianae])

HSP 1 Score: 164.081 bits (414), Expect = 4.145e-41
Identity = 99/280 (35.36%), Postives = 147/280 (52.50%), Query Frame = 0
Query:   20 YMVWNL-------SNEASHRIAPALQGQLCDFHWSAPG-KSQNPALHSLFGLCYAIHAWLSLAPTHAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKR--CKALF-EDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWN-------ADSVKVYSSLTAPAASKSWEEETGLYR---EVEARLLGDFVLIGRFGGKYGHDEHDA-SKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMEL 277
            +M++NL       +++    +A  L  QL +F+W   G K+  P L  +F +CYA+ AWLSL P H A V C  GKTR+G+VVAC L +        + F  F  KR   K+L    +K K PP++  F + F E     + PN  PL L +V    +PVE  PC+ +W+        D +++  +  AP     W EE G +    E    L G F ++  FG  Y  D+ DA S++LFRY   T FL  G+V L+K   D+M++Y+  F+ED F+++L
Sbjct:   77 FMLFNLNALEDAAADDGRQSVADKLHEQLLEFNWERDGMKAHTPPLDLIFRICYALDAWLSLDPQHVALVNCQTGKTRSGVVVACYLLFARLADDPTDAFVEFYRKRWDMKSLTPHALKKKTPPSIQRFLTGFHELLAQQKPPNAKPLLLKAVIFRQLPVELQPCVQIWDDYKLVFCTDELQIGENGEAPVL--DWNEEDGFFAILWENGIELDGGFSILCSFGEDYDADDVDASSRVLFRYADSTLFLVPGLVTLKKHDLDLMKQYEHGFDEDQFSVDL 354          
BLAST of EWM29946.1 vs. NCBI_GenBank
Match: gi|567955377|gb|ETK81010.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|567984058|gb|ETL34435.1| hypothetical protein, variant [Phytophthora parasitica] >gi|570945439|gb|ETP10696.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 160.614 bits (405), Expect = 6.329e-40
Identity = 99/281 (35.23%), Postives = 148/281 (52.67%), Query Frame = 0
Query:   20 YMVWNL-------SNEASHRIAPALQGQLCDFHWSAPG-KSQNPALHSLFGLCYAIHAWLSLAPTHAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKR--CKALF-EDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWN-------ADSVKVYSSLTAPAASKSWEEETGLYR---EVEARLLGDFVLIGRFGGKYGH-DEHDA-SKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMEL 277
            +M++NL       +++    +A  L  QL +F+W   G K+  P L  +F +CYA+ AWLSL P H A V C  GKTR+G+VVAC L +        + F  F  KR   K+L    +K K PP++  F + F E     + PN  PL L +V    +PVE  PC+ +W+        D +++  +  AP     W EE G +    E    L G F ++  FG  Y + D+ DA S++LFRY   T FL  G+V L+K   D+M++Y+  F+ED F+++L
Sbjct:   77 FMLFNLNALEDAAADDGRQSVADKLHEQLLEFNWERDGMKAHTPPLDLIFRICYALDAWLSLDPQHVALVNCQTGKTRSGVVVACYLLFARLADDPTDAFVEFYRKRWDMKSLTPHALKKKTPPSIQRFLTGFHELLAQQKPPNAKPLLLKAVIFRQLPVELQPCVQIWDDYKLVFCTDELQIGENGEAPVL--DWNEEDGFFAILWENGIELDGGFSILCSFGEDYDNADDVDASSRVLFRYADSTLFLVPGLVTLKKHDLDLMKQYEHGFDEDQFSVDL 355          
BLAST of EWM29946.1 vs. NCBI_GenBank
Match: gi|566018011|gb|ETI40922.1| (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 160.614 bits (405), Expect = 6.513e-40
Identity = 99/281 (35.23%), Postives = 148/281 (52.67%), Query Frame = 0
Query:   20 YMVWNL-------SNEASHRIAPALQGQLCDFHWSAPG-KSQNPALHSLFGLCYAIHAWLSLAPTHAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKR--CKALF-EDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWN-------ADSVKVYSSLTAPAASKSWEEETGLYR---EVEARLLGDFVLIGRFGGKYGH-DEHDA-SKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMEL 277
            +M++NL       +++    +A  L  QL +F+W   G K+  P L  +F +CYA+ AWLSL P H A V C  GKTR+G+VVAC L +        + F  F  KR   K+L    +K K PP++  F + F E     + PN  PL L +V    +PVE  PC+ +W+        D +++  +  AP     W EE G +    E    L G F ++  FG  Y + D+ DA S++LFRY   T FL  G+V L+K   D+M++Y+  F+ED F+++L
Sbjct:   77 FMLFNLNALEDAAADDGRQSVADKLHEQLLEFNWERDGMKAHTPPLDLIFRICYALDAWLSLDPQHVALVNCQTGKTRSGVVVACYLLFARLADDPTDAFVEFYRKRWDMKSLTPHALKKKTPPSIQRFLTGFHELLAQQKPPNAKPLLLKAVIFRQLPVELQPCVQIWDDYKLVFCTDELQIGENGEAPVL--DWNEEDGFFAILWENGIELDGGFSILCSFGEDYDNADDVDASSRVLFRYADSTLFLVPGLVTLKKHDLDLMKQYEHGFDEDQFSVDL 355          
BLAST of EWM29946.1 vs. NCBI_GenBank
Match: gi|568043658|gb|ETM40934.1| (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 160.614 bits (405), Expect = 6.766e-40
Identity = 99/281 (35.23%), Postives = 148/281 (52.67%), Query Frame = 0
Query:   20 YMVWNL-------SNEASHRIAPALQGQLCDFHWSAPG-KSQNPALHSLFGLCYAIHAWLSLAPTHAAFVFCGNGKTRTGIVVACLLRYCAQVPTALEGFKLFCHKR--CKALF-EDVKSKIPPTMVNFFSHFDEAYDLGEFPNRHPLRLLSVRIDGVPVEDLPCIDVWN-------ADSVKVYSSLTAPAASKSWEEETGLYR---EVEARLLGDFVLIGRFGGKYGH-DEHDA-SKILFRYVGHTAFLTEGVVELRKDAFDIMQRYKQNFEEDSFAMEL 277
            +M++NL       +++    +A  L  QL +F+W   G K+  P L  +F +CYA+ AWLSL P H A V C  GKTR+G+VVAC L +        + F  F  KR   K+L    +K K PP++  F + F E     + PN  PL L +V    +PVE  PC+ +W+        D +++  +  AP     W EE G +    E    L G F ++  FG  Y + D+ DA S++LFRY   T FL  G+V L+K   D+M++Y+  F+ED F+++L
Sbjct:   77 FMLFNLNALEDAAADDGRQSVADKLHEQLLEFNWERDGMKAHTPPLDLIFRICYALDAWLSLDPQHVALVNCQTGKTRSGVVVACYLLFARLADDPTDAFVEFYRKRWDMKSLTPHALKKKTPPSIQRFLTGFHELLAQQKPPNAKPLLLKAVIFRQLPVELQPCVQIWDDYKLVFCTDELQIGENGEAPVL--DWNEEDGFFAILWENGIELDGGFSILCSFGEDYDNADDVDASSRVLFRYADSTLFLVPGLVTLKKHDLDLMKQYEHGFDEDQFSVDL 355          
The following BLAST results are available for this feature:
BLAST of EWM29946.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112534|gb|EWM29946.1|0.000e+0100.00formin 2 domain containing protein [Nannochloropsi... [more]
gi|553176187|ref|XP_005852360.1|2.531e-121100.00formin like protein [Nannochloropsis gaditana CCMP... [more]
gi|224007299|ref|XP_002292609.1|3.694e-5141.11predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210524154|dbj|GAX16883.1|9.049e-4835.81hypothetical protein FisN_5Hh256 [Fistulifera sola... [more]
gi|970658094|gb|KUF95900.1|1.097e-4235.36hypothetical protein AM588_10008425 [Phytophthora ... [more]
gi|1210527213|dbj|GAX13848.1|1.745e-4138.81hypothetical protein FisN_5Lh256 [Fistulifera sola... [more]
gi|970663927|gb|KUG00975.1|4.145e-4135.36Formin-y 2 domain-containing protein [Phytophthora... [more]
gi|567955377|gb|ETK81010.1|6.329e-4035.23hypothetical protein, variant [Phytophthora parasi... [more]
gi|566018011|gb|ETI40922.1|6.513e-4035.23hypothetical protein, variant [Phytophthora parasi... [more]
gi|568043658|gb|ETM40934.1|6.766e-4035.23hypothetical protein, variant [Phytophthora parasi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna719rna719Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications