EWM23488.1, cds7180 (CDS) Nannochloropsis gaditana

Overview
NameEWM23488.1
Unique Namecds7180
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:687621..688519 -
Alignment locationCM002470.1:687080..687548 -
Alignment locationCM002470.1:686656..686963 -
Alignment locationCM002470.1:686343..686415 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23488.1
ProductHistidine phosphatase superfamily, clade-2
Orig transcript idgnl|cribi|Naga_100198g4.5730.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:687621..688519 -
CM002470.1supercontigCM002470.1:687080..687548 -
CM002470.1supercontigCM002470.1:686656..686963 -
CM002470.1supercontigCM002470.1:686343..686415 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003993acid phosphatase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000560His_Pase_superF_clade-2
IPR029033His_PPase_superfam
Homology
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BLAST of EWM23488.1 vs. NCBI_GenBank
Match: gi|585104558|gb|EWM23488.1| (Histidine phosphatase superfamily, clade-2 [Nannochloropsis gaditana])

HSP 1 Score: 1188.33 bits (3073), Expect = 0.000e+0
Identity = 582/582 (100.00%), Postives = 582/582 (100.00%), Query Frame = 0 
Query:    1 MRRVASLIKAYGLVCFILAVLSTVLVFVLLFSTYQPSRPPGYGRRGGLTGAGTKRPYTLLLDVIEDSWLAHHNGPLNTSSDVLRPSSSGNGTFRLSYVGVLARHGARYPTARKLKLSKAAAKWICDITDGQHSQEGRWKEAQDWCTWMLASLDGVQGGGLNSFGEWEQREFGREIAKTYFPSSSTSSSSPGPCSPASASSLPASTCPTLPPLPTVSVSVTAKARTKQSCRAFWDGVYETVSPSSFDAQQVPPPSSADAPISAGLCDAAEAEAEGLLRPYTTCLRVQRHRKAVVDGLYDPRTIKAARRALLENLDHPSLPHSSVPSDDIVLGVFYACQAAFTLVDPSPSSQEQTPPDQPFPPPSRPDLACSLLSSSSFPLPSPLEALEATEDTENYQTRGFGPASSKEVMAPFLRHLTQRMEKRGGGAEAQRPLMIDLFFAHDSTVLPVVALLDLVRLGPHPHGAARLCPFSSRLTVERWERTSEEDGEAGDEDKEASLERRSQSLIEHKLAAIQDRQGVIKNRQASDRIVLRYNGLLLKTIEGGLAEWKEVYADALLVRHEEVCNVPASQLYPSPNEVEEDL 582
            MRRVASLIKAYGLVCFILAVLSTVLVFVLLFSTYQPSRPPGYGRRGGLTGAGTKRPYTLLLDVIEDSWLAHHNGPLNTSSDVLRPSSSGNGTFRLSYVGVLARHGARYPTARKLKLSKAAAKWICDITDGQHSQEGRWKEAQDWCTWMLASLDGVQGGGLNSFGEWEQREFGREIAKTYFPSSSTSSSSPGPCSPASASSLPASTCPTLPPLPTVSVSVTAKARTKQSCRAFWDGVYETVSPSSFDAQQVPPPSSADAPISAGLCDAAEAEAEGLLRPYTTCLRVQRHRKAVVDGLYDPRTIKAARRALLENLDHPSLPHSSVPSDDIVLGVFYACQAAFTLVDPSPSSQEQTPPDQPFPPPSRPDLACSLLSSSSFPLPSPLEALEATEDTENYQTRGFGPASSKEVMAPFLRHLTQRMEKRGGGAEAQRPLMIDLFFAHDSTVLPVVALLDLVRLGPHPHGAARLCPFSSRLTVERWERTSEEDGEAGDEDKEASLERRSQSLIEHKLAAIQDRQGVIKNRQASDRIVLRYNGLLLKTIEGGLAEWKEVYADALLVRHEEVCNVPASQLYPSPNEVEEDL
Sbjct:    1 MRRVASLIKAYGLVCFILAVLSTVLVFVLLFSTYQPSRPPGYGRRGGLTGAGTKRPYTLLLDVIEDSWLAHHNGPLNTSSDVLRPSSSGNGTFRLSYVGVLARHGARYPTARKLKLSKAAAKWICDITDGQHSQEGRWKEAQDWCTWMLASLDGVQGGGLNSFGEWEQREFGREIAKTYFPSSSTSSSSPGPCSPASASSLPASTCPTLPPLPTVSVSVTAKARTKQSCRAFWDGVYETVSPSSFDAQQVPPPSSADAPISAGLCDAAEAEAEGLLRPYTTCLRVQRHRKAVVDGLYDPRTIKAARRALLENLDHPSLPHSSVPSDDIVLGVFYACQAAFTLVDPSPSSQEQTPPDQPFPPPSRPDLACSLLSSSSFPLPSPLEALEATEDTENYQTRGFGPASSKEVMAPFLRHLTQRMEKRGGGAEAQRPLMIDLFFAHDSTVLPVVALLDLVRLGPHPHGAARLCPFSSRLTVERWERTSEEDGEAGDEDKEASLERRSQSLIEHKLAAIQDRQGVIKNRQASDRIVLRYNGLLLKTIEGGLAEWKEVYADALLVRHEEVCNVPASQLYPSPNEVEEDL 582
The following BLAST results are available for this feature:
BLAST of EWM23488.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585104558|gb|EWM23488.1|0.000e+0100.00Histidine phosphatase superfamily, clade-2 [Nannoc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7197rna7197Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications