EWM29955.1, cds718 (CDS) Nannochloropsis gaditana

Overview
NameEWM29955.1
Unique Namecds718
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:253832..253918 -
Alignment locationCM002456.1:253645..253728 -
Alignment locationCM002456.1:253001..253507 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29955.1
Productformin like protein
Orig transcript idgnl|cribi|Naga_101982g1.5779.mrna
GeneFOL2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:253832..253918 -
CM002456.1supercontigCM002456.1:253645..253728 -
CM002456.1supercontigCM002456.1:253001..253507 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR015425FH2_Formin
Homology
BLAST of EWM29955.1 vs. NCBI_GenBank
Match: gi|585112547|gb|EWM29955.1| (formin like protein [Nannochloropsis gaditana])

HSP 1 Score: 439.499 bits (1129), Expect = 1.165e-155
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MGITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAGWNILERVAQKMPPPSLPSSRSATPSPPPPPSSSTFTTPPRYRAASSMAVPISRMDSEGEGGRQRASSLDAPGVPAKPIGGSGSRRDAGEEGKRGGKEKGNSPFRKTLENLFNRKSPPRSEGGAEGGAEGGSEGRKGKTPSPPRDQSGLRPGRTPTK 225
            MGITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAGWNILERVAQKMPPPSLPSSRSATPSPPPPPSSSTFTTPPRYRAASSMAVPISRMDSEGEGGRQRASSLDAPGVPAKPIGGSGSRRDAGEEGKRGGKEKGNSPFRKTLENLFNRKSPPRSEGGAEGGAEGGSEGRKGKTPSPPRDQSGLRPGRTPTK
Sbjct:    1 MGITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAGWNILERVAQKMPPPSLPSSRSATPSPPPPPSSSTFTTPPRYRAASSMAVPISRMDSEGEGGRQRASSLDAPGVPAKPIGGSGSRRDAGEEGKRGGKEKGNSPFRKTLENLFNRKSPPRSEGGAEGGAEGGSEGRKGKTPSPPRDQSGLRPGRTPTK 225          
BLAST of EWM29955.1 vs. NCBI_GenBank
Match: gi|299473573|emb|CBN77968.1| (Formin-like 2 [Ectocarpus siliculosus])

HSP 1 Score: 82.8037 bits (203), Expect = 1.384e-14
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = 0
Query:    2 GITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAGWNILERVAQKMP 81
            G TLDSLLKL  AKA D+KTSILH L+ + ++N+P +L F +DL+ V PAS++L+  V AE+ +L  G+   +R+ +  P
Sbjct: 2416 GFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKDDLKHVFPASRLLISTVTAELSDLNKGYASFKRLVEGDP 2495          
BLAST of EWM29955.1 vs. NCBI_GenBank
Match: gi|224012681|ref|XP_002294993.1| (hypothetical protein THAPSDRAFT_264774 [Thalassiosira pseudonana CCMP1335] >gi|220969432|gb|EED87773.1| hypothetical protein THAPSDRAFT_264774, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 76.2554 bits (186), Expect = 1.306e-12
Identity = 32/77 (41.56%), Postives = 56/77 (72.73%), Query Frame = 0
Query:    2 GITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAGWNILERVAQ 78
             ITLDSLLKL EAKA DR+TS+LH L+ +++KN+ DVL  ++D   V+ A ++ +E++  +++E+  G  +++ +A+
Sbjct:  262 AITLDSLLKLAEAKAFDRETSVLHYLVSIVQKNDEDVLKLSDDFVPVKAAERVAVEMLSQQLKEMTQGVKLIKEMAK 338          
BLAST of EWM29955.1 vs. NCBI_GenBank
Match: gi|397564612|gb|EJK44277.1| (hypothetical protein THAOC_37194, partial [Thalassiosira oceanica])

HSP 1 Score: 76.2554 bits (186), Expect = 2.197e-12
Identity = 33/77 (42.86%), Postives = 56/77 (72.73%), Query Frame = 0
Query:    2 GITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAGWNILERVAQ 78
            G TLD+LLKL EAKA D+KTS+L  L++++K NEPD+L   E++ S+ PA  +++E +++E++EL    + ++  A+
Sbjct: 1189 GFTLDALLKLDEAKAFDKKTSVLQYLVKIVKANEPDLLKVHEEMPSIVPAENVVVESLVSELKELNDQLDSVKATAE 1265          
BLAST of EWM29955.1 vs. NCBI_GenBank
Match: gi|397575086|gb|EJK49527.1| (hypothetical protein THAOC_31591 [Thalassiosira oceanica])

HSP 1 Score: 74.3294 bits (181), Expect = 4.725e-12
Identity = 30/68 (44.12%), Postives = 52/68 (76.47%), Query Frame = 0
Query:    2 GITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAG 69
             ITLDSLLKL EAKA D++TS LH L+ +++KN+ DVL  +ED   V+ A ++ ++++ ++++E+++G
Sbjct:  129 AITLDSLLKLAEAKAFDKQTSALHYLVSIVQKNDEDVLNLSEDFVPVKAAERVAMDMLASQLKEMQSG 196          
BLAST of EWM29955.1 vs. NCBI_GenBank
Match: gi|224007299|ref|XP_002292609.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971471|gb|EED89805.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 72.7886 bits (177), Expect = 3.304e-11
Identity = 31/65 (47.69%), Postives = 51/65 (78.46%), Query Frame = 0
Query:    2 GITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIREL 66
            G TL++LLKL EAKA D+KTS+L  L++++K NEPD+L   E++ S+ PA  +++E +++E+R+L
Sbjct: 2724 GFTLEALLKLDEAKAFDKKTSVLQYLVKLVKSNEPDLLKVHEEMPSIGPAENVIVESLISELRDL 2788          
BLAST of EWM29955.1 vs. NCBI_GenBank
Match: gi|641709333|ref|XP_008143749.1| (PREDICTED: protein diaphanous homolog 3 isoform X3 [Eptesicus fuscus])

HSP 1 Score: 70.0922 bits (170), Expect = 2.626e-10
Identity = 37/116 (31.90%), Postives = 62/116 (53.45%), Query Frame = 0
Query:    1 MGITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAGWNILERVAQKMPPPSLPSSRSATPSPPPPPSSSTFTTPPRYRAASSM 116
             G  L SL KL + K+ D+KT++LH L+++ ++  PD+L F EDLQ +  ASK+ +E++   ++++      LER  +  PPP     +  T       SS   +T  +Y   S +
Sbjct:  804 FGFNLSSLCKLKDTKSADQKTTLLHFLVEICEEKYPDILNFVEDLQHLDKASKVSVEMLEKNLKQMGRQLQQLERDLETFPPPEDVHDKFVTKM-----SSFVISTKEQYENLSKL 914          
BLAST of EWM29955.1 vs. NCBI_GenBank
Match: gi|1150087039|ref|XP_020229154.1| (formin-like protein 13 isoform X2 [Cajanus cajan])

HSP 1 Score: 69.3218 bits (168), Expect = 4.864e-10
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 0
Query:    1 MGITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAGWNILERVAQKMPPPSLPSSRSATPSPPPPPSSSTFTTPPRYRAASSMAVPISRMDSEGEGGRQRAS 135
            +G  LDSLLKL E +A DRK +++H L +V+    P+VL F++DL ++ PA+KI L+ +  E++ L  G   LE+V Q++       S S    P       TF+ P      + +    SR  +     +QRAS
Sbjct: 1063 IGFRLDSLLKLTETRARDRKMTLMHYLCKVLVDKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQALNKG---LEKVVQEL-------STSENDGPISESFRKTFSAPQHTPTKTRLQ---SRTKTHNPVKKQRAS 1184          
BLAST of EWM29955.1 vs. NCBI_GenBank
Match: gi|1150087041|ref|XP_020229155.1| (formin-like protein 13 isoform X3 [Cajanus cajan])

HSP 1 Score: 68.9366 bits (167), Expect = 6.390e-10
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 0
Query:    1 MGITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAGWNILERVAQKM 80
            +G  LDSLLKL E +A DRK +++H L +V+    P+VL F++DL ++ PA+KI L+ +  E++ L  G   LE+V Q++
Sbjct: 1063 IGFRLDSLLKLTETRARDRKMTLMHYLCKVLVDKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQALNKG---LEKVVQEL 1139          
BLAST of EWM29955.1 vs. NCBI_GenBank
Match: gi|1150087033|ref|XP_020229150.1| (formin-like protein 13 isoform X1 [Cajanus cajan] >gi|1150087035|ref|XP_020229151.1| formin-like protein 13 isoform X1 [Cajanus cajan] >gi|1150087037|ref|XP_020229152.1| formin-like protein 13 isoform X1 [Cajanus cajan])

HSP 1 Score: 68.9366 bits (167), Expect = 6.463e-10
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 0
Query:    1 MGITLDSLLKLPEAKAHDRKTSILHGLIQVIKKNEPDVLAFTEDLQSVRPASKILLELVLAEIRELEAGWNILERVAQKM 80
            +G  LDSLLKL E +A DRK +++H L +V+    P+VL F++DL ++ PA+KI L+ +  E++ L  G   LE+V Q++
Sbjct: 1063 IGFRLDSLLKLTETRARDRKMTLMHYLCKVLVDKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQALNKG---LEKVVQEL 1139          
The following BLAST results are available for this feature:
BLAST of EWM29955.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112547|gb|EWM29955.1|1.165e-155100.00formin like protein [Nannochloropsis gaditana][more]
gi|299473573|emb|CBN77968.1|1.384e-1447.50Formin-like 2 [Ectocarpus siliculosus][more]
gi|224012681|ref|XP_002294993.1|1.306e-1241.56hypothetical protein THAPSDRAFT_264774 [Thalassios... [more]
gi|397564612|gb|EJK44277.1|2.197e-1242.86hypothetical protein THAOC_37194, partial [Thalass... [more]
gi|397575086|gb|EJK49527.1|4.725e-1244.12hypothetical protein THAOC_31591 [Thalassiosira oc... [more]
gi|224007299|ref|XP_002292609.1|3.304e-1147.69predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|641709333|ref|XP_008143749.1|2.626e-1031.90PREDICTED: protein diaphanous homolog 3 isoform X3... [more]
gi|1150087039|ref|XP_020229154.1|4.864e-1034.07formin-like protein 13 isoform X2 [Cajanus cajan][more]
gi|1150087041|ref|XP_020229155.1|6.390e-1042.50formin-like protein 13 isoform X3 [Cajanus cajan][more]
gi|1150087033|ref|XP_020229150.1|6.463e-1042.50formin-like protein 13 isoform X1 [Cajanus cajan] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna718rna718Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications