EWM23508.1, cds7167 (CDS) Nannochloropsis gaditana

Overview
NameEWM23508.1
Unique Namecds7167
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:651620..651811 +
Alignment locationCM002470.1:651943..652053 +
Alignment locationCM002470.1:652145..652225 +
Alignment locationCM002470.1:652407..652451 +
Alignment locationCM002470.1:652579..652647 +
Alignment locationCM002470.1:653051..653098 +
Alignment locationCM002470.1:653192..653242 +
Alignment locationCM002470.1:654024..654059 +
Alignment locationCM002470.1:654271..654303 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23508.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100581g3.1272.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:651620..651811 +
CM002470.1supercontigCM002470.1:651943..652053 +
CM002470.1supercontigCM002470.1:652145..652225 +
CM002470.1supercontigCM002470.1:652407..652451 +
CM002470.1supercontigCM002470.1:652579..652647 +
CM002470.1supercontigCM002470.1:653051..653098 +
CM002470.1supercontigCM002470.1:653192..653242 +
CM002470.1supercontigCM002470.1:654024..654059 +
CM002470.1supercontigCM002470.1:654271..654303 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM23508.1 vs. NCBI_GenBank
Match: gi|585104587|gb|EWM23508.1| (hypothetical protein Naga_100581g3 [Nannochloropsis gaditana])

HSP 1 Score: 434.491 bits (1116), Expect = 7.528e-154
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0 
Query:    1 MTCNTRSCLASCLCPLIIHHTYRKHRTAPSKDMRFHATTCTFYLLLGALALVHGDTMNTPNLRRAQEASAETTVEKVQEPAAEASMPAVAAPDANTPNLRMDMPMPGAMDGMNMEEGPPTEGDDNHRKLWWWNKYNNWGWNDPWAWKYGQKYGGWNNGWNNGWGNQWNNGWNNGWNNGWGNNNWNNGWNNGWNNGWNNNWNNGWNNGGWNQWNNVNRWNWV 221
            MTCNTRSCLASCLCPLIIHHTYRKHRTAPSKDMRFHATTCTFYLLLGALALVHGDTMNTPNLRRAQEASAETTVEKVQEPAAEASMPAVAAPDANTPNLRMDMPMPGAMDGMNMEEGPPTEGDDNHRKLWWWNKYNNWGWNDPWAWKYGQKYGGWNNGWNNGWGNQWNNGWNNGWNNGWGNNNWNNGWNNGWNNGWNNNWNNGWNNGGWNQWNNVNRWNWV
Sbjct:    1 MTCNTRSCLASCLCPLIIHHTYRKHRTAPSKDMRFHATTCTFYLLLGALALVHGDTMNTPNLRRAQEASAETTVEKVQEPAAEASMPAVAAPDANTPNLRMDMPMPGAMDGMNMEEGPPTEGDDNHRKLWWWNKYNNWGWNDPWAWKYGQKYGGWNNGWNNGWGNQWNNGWNNGWNNGWGNNNWNNGWNNGWNNGWNNNWNNGWNNGGWNQWNNVNRWNWV 221
[Close]
BLAST of EWM23508.1 vs. NCBI_GenBank
Match: gi|585104586|gb|EWM23507.1| (hypothetical protein Naga_100581g3 [Nannochloropsis gaditana])

HSP 1 Score: 320.087 bits (819), Expect = 1.100e-108
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 
Query:    1 MTCNTRSCLASCLCPLIIHHTYRKHRTAPSKDMRFHATTCTFYLLLGALALVHGDTMNTPNLRRAQEASAETTVEKVQEPAAEASMPAVAAPDANTPNLRMDMPMPGAMDGMNMEEGPPTEGDDNHRKLWWWNKYNNWGWNDPWAWKYGQKY 152
            MTCNTRSCLASCLCPLIIHHTYRKHRTAPSKDMRFHATTCTFYLLLGALALVHGDTMNTPNLRRAQEASAETTVEKVQEPAAEASMPAVAAPDANTPNLRMDMPMPGAMDGMNMEEGPPTEGDDNHRKLWWWNKYNNWGWNDPWAWKYGQKY
Sbjct:    1 MTCNTRSCLASCLCPLIIHHTYRKHRTAPSKDMRFHATTCTFYLLLGALALVHGDTMNTPNLRRAQEASAETTVEKVQEPAAEASMPAVAAPDANTPNLRMDMPMPGAMDGMNMEEGPPTEGDDNHRKLWWWNKYNNWGWNDPWAWKYGQKY 152
[Close]
BLAST of EWM23508.1 vs. NCBI_GenBank
Match: gi|553191559|ref|XP_005855400.1| (hypothetical protein NGA_0134800, partial [Nannochloropsis gaditana CCMP526] >gi|422293663|gb|EKU20963.1| hypothetical protein NGA_0134800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 231.491 bits (589), Expect = 3.802e-75
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 
Query:   33 MRFHATTCTFYLLLGALALVHGDTMNTPNLRRAQEASAETTVEKVQEPAAEASMPAVAAPDANTPNLRMDMPMPGAMDGMNMEEGPPTEGDDNHRKLWWWNKYNNWGWNDP 143
            MRFHATTCTFYLLLGALALVHGDTMNTPNLRRAQEASAETTVEKVQEPAAEASMPAVAAPDANTPNLRMDMPMPGAMDGMNMEEGPPTEGDDNHRKLWWWNKYNNWGWNDP
Sbjct:    1 MRFHATTCTFYLLLGALALVHGDTMNTPNLRRAQEASAETTVEKVQEPAAEASMPAVAAPDANTPNLRMDMPMPGAMDGMNMEEGPPTEGDDNHRKLWWWNKYNNWGWNDP 111
The following BLAST results are available for this feature:
BLAST of EWM23508.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585104587|gb|EWM23508.1|7.528e-154100.00hypothetical protein Naga_100581g3 [Nannochloropsi... [more]
gi|585104586|gb|EWM23507.1|1.100e-108100.00hypothetical protein Naga_100581g3 [Nannochloropsi... [more]
gi|553191559|ref|XP_005855400.1|3.802e-75100.00hypothetical protein NGA_0134800, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7184rna7184Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications