EWM23510.1, cds7163 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23510.1
Unique Name	cds7163
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002470.1:647294..647346 -
Alignment location	CM002470.1:646830..647172 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23510.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102246g1.9632.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:647294..647346 -
CM002470.1	supercontig	CM002470.1:646830..647172 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM23510.1 vs. NCBI_GenBank
Match: gi|585104591|gb|EWM23510.1| (hypothetical protein Naga_102246g1 [Nannochloropsis gaditana])

HSP 1 Score: 266.159 bits (679), Expect = 3.789e-90
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0

Query:    1 MSGPAGLDLGQLSANYVCRETVTTMEKALLAIWTTYTNEFRQSYNKRIKEEAQRAPLPFLSSLFRRKGRAGRGREEREDAERALRSILLEAQGFLGMWLLFLTIACPVEIMEIWPPSARGRGRGREGGQCT 131
            MSGPAGLDLGQLSANYVCRETVTTMEKALLAIWTTYTNEFRQSYNKRIKEEAQRAPLPFLSSLFRRKGRAGRGREEREDAERALRSILLEAQGFLGMWLLFLTIACPVEIMEIWPPSARGRGRGREGGQCT
Sbjct:    1 MSGPAGLDLGQLSANYVCRETVTTMEKALLAIWTTYTNEFRQSYNKRIKEEAQRAPLPFLSSLFRRKGRAGRGREEREDAERALRSILLEAQGFLGMWLLFLTIACPVEIMEIWPPSARGRGRGREGGQCT 131

The following BLAST results are available for this feature:

BLAST of EWM23510.1 vs. NCBI_GenBank

BLAST of EWM23510.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585104591\|gb\|EWM23510.1\|	3.789e-90	100.00	hypothetical protein Naga_102246g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7180	rna7180	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications