EWM23564.1, cds7109 (CDS) Nannochloropsis gaditana

Overview
NameEWM23564.1
Unique Namecds7109
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:506498..506567 +
Alignment locationCM002470.1:506732..506950 +
Alignment locationCM002470.1:507196..507434 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23564.1
ProductMitochondrial carrier domain protein
Orig transcript idgnl|cribi|Naga_102072g1.814.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:506498..506567 +
CM002470.1supercontigCM002470.1:506732..506950 +
CM002470.1supercontigCM002470.1:507196..507434 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018108Mitochondrial_sb/sol_carrier
IPR023395Mt_carrier_dom
Homology
[Close]
BLAST of EWM23564.1 vs. NCBI_GenBank
Match: gi|585104692|gb|EWM23564.1| (Mitochondrial carrier domain protein [Nannochloropsis gaditana])

HSP 1 Score: 349.747 bits (896), Expect = 6.526e-122
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 
Query:    1 MTPCTDAFENNSFLAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVRPEGGGREGGRKGGPGRNLCLG 175
            MTPCTDAFENNSFLAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVRPEGGGREGGRKGGPGRNLCLG
Sbjct:    1 MTPCTDAFENNSFLAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVRPEGGGREGGRKGGPGRNLCLG 175
[Close]
BLAST of EWM23564.1 vs. NCBI_GenBank
Match: gi|966499277|ref|WP_058516043.1| (hypothetical protein [Legionella santicrucis] >gi|962269760|gb|KTD53774.1| hypothetical protein Lsan_4184 [Legionella santicrucis])

HSP 1 Score: 110.923 bits (276), Expect = 3.246e-26
Identity = 61/144 (42.36%), Postives = 78/144 (54.17%), Query Frame = 0 
Query:   11 NSFLAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVR 154
            N  L+ +  G  AG++ GV  N  SAIKYHTWG ++ASF  + R MWR GG++PF+KGT  T+ RD+ FG  Y +LR                 SL+ S        + N  +      +L FI N  AAGVAT VS PFNYVR
Sbjct:  107 NQTLSQFFVGMAAGSIGGVLTNSISAIKYHTWGHENASFRSSIREMWRLGGIKPFLKGTTATMTRDMVFGSTYEMLR-----------------SLISSTVKKSENKTPNENK-----SSLEFIHNATAAGVATIVSSPFNYVR 228
[Close]
BLAST of EWM23564.1 vs. NCBI_GenBank
Match: gi|653019762|ref|WP_027271708.1| (hypothetical protein [Legionella sainthelensi] >gi|962276468|gb|KTD60365.1| hypothetical protein Lsai_0115 [Legionella sainthelensi])

HSP 1 Score: 105.916 bits (263), Expect = 2.411e-24
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = 0 
Query:   11 NSFLAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVR 154
            N  L+ +  G  AG++ G+  N  SAIKYHTWG+++ASF  + R MW  GG++PF+KGTA T+ RD+ FG  Y +LR                 +L+ S       ++++  + +     L FI N  AAGVAT +S PFNYVR
Sbjct:  107 NQTLSQFFVGLTAGSIGGIFTNSISAIKYHTWGQENASFRSSVREMWNLGGIKPFLKGTAATMTRDMVFGSTYEMLR-----------------TLMSSTIKKSENNTTHENQPK-----LEFIHNATAAGVATILSSPFNYVR 228
[Close]
BLAST of EWM23564.1 vs. NCBI_GenBank
Match: gi|489727781|ref|WP_003631897.1| (hypothetical protein [Legionella longbeachae] >gi|269988892|gb|EEZ95146.1| conserved hypothetical protein [Legionella longbeachae D-4968] >gi|288857870|emb|CBJ11719.1| Hypothetical protein, weakly similar to eukaryotic proteins [Legionella longbeachae NSW150] >gi|1169352066|gb|ARB91481.1| hypothetical protein A6J40_04460 [Legionella longbeachae] >gi|1187409246|gb|ARM32094.1| hypothetical protein B0B39_00410 [Legionella longbeachae])

HSP 1 Score: 105.145 bits (261), Expect = 4.115e-24
Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = 0 
Query:   11 NSFLAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVR 154
            N   + +  G  AG++ G+  N  SAIKYHTWG+++ASF  + R MW  GG++PF+KGTA T+ RD+ FG  Y +LR                 + + S       +++N  + +     L FI N  AAGVAT +S PFNYVR
Sbjct:  107 NQTFSQFFVGMTAGSIGGIFTNSISAIKYHTWGQENASFRSSIREMWNLGGIKPFLKGTAATMTRDMVFGSTYEMLR-----------------TFMSSTIKKSENNTTNENQPK-----LEFIHNATAAGVATILSSPFNYVR 228
[Close]
BLAST of EWM23564.1 vs. NCBI_GenBank
Match: gi|966436463|ref|WP_058476831.1| (hypothetical protein [Legionella steigerwaltii] >gi|962294860|gb|KTD78519.1| carrier protein [Legionella steigerwaltii])

HSP 1 Score: 103.99 bits (258), Expect = 1.136e-23
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 0 
Query:   14 LAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVR 154
            L+ +  G +AG++ G++ N  SA+KYHTWG++DASF ++A+ MW  GG +PF+KGT  T+ RD+ FG  Y +LR+ +           +  +   +P+S PS                 F  N  AAG+AT  S PFNYVR
Sbjct:  110 LSQFYVGMVAGSIGGISTNSISAVKYHTWGKEDASFRKSAQEMWAQGGFKPFIKGTTATVTRDMVFGSTYEMLRSLM--------RAKAKKAESKAPSSKPSYQE--------------FFYNASAAGLATIASSPFNYVR 228
[Close]
BLAST of EWM23564.1 vs. NCBI_GenBank
Match: gi|966468817|ref|WP_058500143.1| (hypothetical protein [Legionella gratiana] >gi|962221739|gb|KTD06399.1| hypothetical protein Lgra_3176 [Legionella gratiana])

HSP 1 Score: 102.834 bits (255), Expect = 2.911e-23
Identity = 60/141 (42.55%), Postives = 80/141 (56.74%), Query Frame = 0 
Query:   14 LAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVR 154
            L+ +  G  AG++ GV  N  SAIKYHTWG+++ASF  + R MW  GG+ PF+KGT  T+ RD+ FG  Y +LR+  L++    + E+  S      A+ P               AL FI N  AAG+AT VS PFNYVR
Sbjct:   98 LSQFFVGMTAGSIGGVLTNSISAIKYHTWGQENASFRSSIREMWGLGGIAPFLKGTTATMTRDMFFGSTYEMLRS--LMNNTTKKSENKTSD-----ANQP---------------ALEFIYNASAAGMATIVSSPFNYVR 216
[Close]
BLAST of EWM23564.1 vs. NCBI_GenBank
Match: gi|654930511|ref|WP_028380880.1| (hypothetical protein [Legionella cherrii])

HSP 1 Score: 102.449 bits (254), Expect = 3.987e-23
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 0 
Query:   14 LAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVR 154
            ++ +  G  AG++ GV  N  SAIKYHTWG++DASF  + + MW  GG +PF+KGT  T+ RD+ FG  Y +LR                 SL+ S A+     +  PR R++  +   F+ N  AAG+AT  S PFNYVR
Sbjct:  110 VSQFYVGMAAGSIGGVLTNSISAIKYHTWGKEDASFRSSIQEMWAQGGYKPFIKGTTATVTRDMVFGSTYEMLR-----------------SLMKSNAT--KTENQEPRARQAYRE---FLGNASAAGLATIASSPFNYVR 228
[Close]
BLAST of EWM23564.1 vs. NCBI_GenBank
Match: gi|963702259|ref|WP_058387364.1| (hypothetical protein [Legionella cherrii] >gi|962197268|gb|KTC82312.1| carrier protein [Legionella cherrii])

HSP 1 Score: 102.449 bits (254), Expect = 4.245e-23
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 0 
Query:   14 LAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVR 154
            ++ +  G  AG++ GV  N  SAIKYHTWG++DASF  + + MW  GG +PF+KGT  T+ RD+ FG  Y +LR                 SL+ S A+     +  PR R++  +   F+ N  AAG+AT  S PFNYVR
Sbjct:  110 VSQFYVGMAAGSIGGVLTNSISAIKYHTWGKEDASFRSSIQEMWAQGGYKPFIKGTTATVTRDMVFGSTYEMLR-----------------SLMKSNAT--KTENQEPRARQAYRE---FLGNASAAGLATIASSPFNYVR 228
[Close]
BLAST of EWM23564.1 vs. NCBI_GenBank
Match: gi|966422106|ref|WP_058465307.1| (hypothetical protein [Legionella cincinnatiensis] >gi|962198433|gb|KTC83462.1| hypothetical protein Lcin_2149 [Legionella cincinnatiensis])

HSP 1 Score: 101.293 bits (251), Expect = 1.232e-22
Identity = 58/144 (40.28%), Postives = 79/144 (54.86%), Query Frame = 0 
Query:   11 NSFLAAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVR 154
            N  L+ +  G  AG++ G+  N  +AIKYHTWG+++ASF  +   MW  GG++PF+KGT  T+ RD+ FG  Y +LR+  L+     + E+  +   P     PS               L FI N  AAGVAT VS PFNYVR
Sbjct:  107 NQTLSQFFVGMTAGSIGGILTNSIAAIKYHTWGQENASFRSSIHEMWGLGGIKPFLKGTTATMTRDMVFGSTYEMLRS--LMSSTVKKSENKTAHEHP-----PS---------------LEFIHNATAAGVATIVSSPFNYVR 228
[Close]
BLAST of EWM23564.1 vs. NCBI_GenBank
Match: gi|671586399|ref|WP_031562849.1| (hypothetical protein [Legionella wadsworthii])

HSP 1 Score: 100.138 bits (248), Expect = 3.200e-22
Identity = 53/140 (37.86%), Postives = 72/140 (51.43%), Query Frame = 0 
Query:   15 AAWMAGNLAGALNGVALNPASAIKYHTWGRDDASFSRTARLMWRDGGLRPFVKGTAPTILRDVTFGGVYSVLRNGLLLHVAEGRGESSPSSLLPSPASSPSPSSSNPRRRRSKGDALTFILNFIAAGVATTVSGPFNYVR 154
            A +  G  AG++ G   N  SA+KYHTWG++ ASF  +   MW  GG +PF+KGT  T+ RD+ FG  Y +LR+ L+ +  +  G  +P   +PS                       F  N  AAG+AT  S PFNYVR
Sbjct:  112 AHFYVGMAAGSIGGAMTNSISAVKYHTWGKEKASFRSSVYDMWTHGGYKPFIKGTTATMTRDMVFGSTYEMLRH-LMKNQVKKEGNQNPEPYMPS---------------------WEFFYNACAAGIATIASSPFNYVR 229
The following BLAST results are available for this feature:
BLAST of EWM23564.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104692|gb|EWM23564.1|6.526e-122100.00Mitochondrial carrier domain protein [Nannochlorop... [more]
gi|966499277|ref|WP_058516043.1|3.246e-2642.36hypothetical protein [Legionella santicrucis] >gi|... [more]
gi|653019762|ref|WP_027271708.1|2.411e-2439.58hypothetical protein [Legionella sainthelensi] >gi... [more]
gi|489727781|ref|WP_003631897.1|4.115e-2438.89hypothetical protein [Legionella longbeachae] >gi|... [more]
gi|966436463|ref|WP_058476831.1|1.136e-2338.30hypothetical protein [Legionella steigerwaltii] >g... [more]
gi|966468817|ref|WP_058500143.1|2.911e-2342.55hypothetical protein [Legionella gratiana] >gi|962... [more]
gi|654930511|ref|WP_028380880.1|3.987e-2340.43hypothetical protein [Legionella cherrii][more]
gi|963702259|ref|WP_058387364.1|4.245e-2340.43hypothetical protein [Legionella cherrii] >gi|9621... [more]
gi|966422106|ref|WP_058465307.1|1.232e-2240.28hypothetical protein [Legionella cincinnatiensis] ... [more]
gi|671586399|ref|WP_031562849.1|3.200e-2237.86hypothetical protein [Legionella wadsworthii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7126rna7126Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications