EWM23597.1, cds7081 (CDS) Nannochloropsis gaditana

Overview
NameEWM23597.1
Unique Namecds7081
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:441001..443187 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23597.1
Productg1 s-specific cyclin-e
Orig transcript idgnl|cribi|Naga_100139g11.4749.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:441001..443187 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR006671Cyclin_N
IPR013763Cyclin-like
Homology
BLAST of EWM23597.1 vs. NCBI_GenBank
Match: gi|585104738|gb|EWM23597.1| (g1 s-specific cyclin-e [Nannochloropsis gaditana])

HSP 1 Score: 1487.24 bits (3849), Expect = 0.000e+0
Identity = 728/728 (100.00%), Postives = 728/728 (100.00%), Query Frame = 0
Query:    1 MYGLNKACEDSVLAAACHETLEMEDLEALATCAKSTYSGDVGGDTWIQSRRPSRSSFYLKTGLFLPPDVTLHNMKHYGRRHFLKMRESEMHIYACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYFLAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALYVLLPPVFYPALALATGYPPNDKALEHCKAYLTFLATGLFDSSLPLQALPLSRRHLQHGQPGQRAGGGFGWTPEASEAAQSGVPLWDKHSLQSHPSRLLPHLLGRISAISDHCDDLPPPPPHAPKTQGAQADNPAGNAAALATSSLSPPCSSASPSASTLPSATRAPAALADLVTPIHAKARLLSPLPSFLGYRSVSSKNLIAGRKGRCDEWEDGEAMFMETLEMWPMDESENGEETEEEEEEEEGGAEEEEEEKGGAEEEEEGRKGMDEDIFGHSLELHEEWESGRRGRERKAGRCGLGQDKGRGAGPQSLRLEALDGEASENELGWSMATTVDPQTTRDSVFSFFSLEGTEGGQDGGHGLGSGRGSEEMLGWQHEVRERFGEDCTNTQESCGEGEELEEMRNVALSSPCLTPIFCPDEAKVASGLGASATTTAP 728
            MYGLNKACEDSVLAAACHETLEMEDLEALATCAKSTYSGDVGGDTWIQSRRPSRSSFYLKTGLFLPPDVTLHNMKHYGRRHFLKMRESEMHIYACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYFLAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALYVLLPPVFYPALALATGYPPNDKALEHCKAYLTFLATGLFDSSLPLQALPLSRRHLQHGQPGQRAGGGFGWTPEASEAAQSGVPLWDKHSLQSHPSRLLPHLLGRISAISDHCDDLPPPPPHAPKTQGAQADNPAGNAAALATSSLSPPCSSASPSASTLPSATRAPAALADLVTPIHAKARLLSPLPSFLGYRSVSSKNLIAGRKGRCDEWEDGEAMFMETLEMWPMDESENGEETEEEEEEEEGGAEEEEEEKGGAEEEEEGRKGMDEDIFGHSLELHEEWESGRRGRERKAGRCGLGQDKGRGAGPQSLRLEALDGEASENELGWSMATTVDPQTTRDSVFSFFSLEGTEGGQDGGHGLGSGRGSEEMLGWQHEVRERFGEDCTNTQESCGEGEELEEMRNVALSSPCLTPIFCPDEAKVASGLGASATTTAP
Sbjct:    1 MYGLNKACEDSVLAAACHETLEMEDLEALATCAKSTYSGDVGGDTWIQSRRPSRSSFYLKTGLFLPPDVTLHNMKHYGRRHFLKMRESEMHIYACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYFLAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALYVLLPPVFYPALALATGYPPNDKALEHCKAYLTFLATGLFDSSLPLQALPLSRRHLQHGQPGQRAGGGFGWTPEASEAAQSGVPLWDKHSLQSHPSRLLPHLLGRISAISDHCDDLPPPPPHAPKTQGAQADNPAGNAAALATSSLSPPCSSASPSASTLPSATRAPAALADLVTPIHAKARLLSPLPSFLGYRSVSSKNLIAGRKGRCDEWEDGEAMFMETLEMWPMDESENGEETEEEEEEEEGGAEEEEEEKGGAEEEEEGRKGMDEDIFGHSLELHEEWESGRRGRERKAGRCGLGQDKGRGAGPQSLRLEALDGEASENELGWSMATTVDPQTTRDSVFSFFSLEGTEGGQDGGHGLGSGRGSEEMLGWQHEVRERFGEDCTNTQESCGEGEELEEMRNVALSSPCLTPIFCPDEAKVASGLGASATTTAP 728          
BLAST of EWM23597.1 vs. NCBI_GenBank
Match: gi|198417863|ref|XP_002127620.1| (PREDICTED: G1/S-specific cyclin-E1 isoform X2 [Ciona intestinalis])

HSP 1 Score: 141.354 bits (355), Expect = 3.080e-32
Identity = 80/202 (39.60%), Postives = 113/202 (55.94%), Query Frame = 0
Query:   92 IYACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYFLAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALY 293
            +Y  +  Y +R  +L+P MR+ L+DW+MEVC  +S+HR TF  AV++ DRYLS   +   K RLQL+ +TALF+AAK++E+YPPK  D A  T GA    +++  E  +LT L W+L+P T   W   Y                 AA AP+ S    S+   L   P      +  LLDL +LD+ S+ F   +LAA+ALY
Sbjct:  177 VYCRNSSYMDRHADLQPRMRSILIDWIMEVCEVYSLHRETFYLAVDYIDRYLS-ATKNIHKTRLQLVGVTALFIAAKLEEIYPPKLSDFAYVTDGACTDDEILSQELIMLTALKWSLSPITAISWLNVYL------------QTAHAAFAPNPS----SASFFLPQYPQETFVHISQLLDLCVLDIESLEFSSGLLAASALY 361          
BLAST of EWM23597.1 vs. NCBI_GenBank
Match: gi|198417861|ref|XP_002127570.1| (PREDICTED: G1/S-specific cyclin-E1 isoform X1 [Ciona intestinalis])

HSP 1 Score: 141.354 bits (355), Expect = 3.688e-32
Identity = 80/202 (39.60%), Postives = 113/202 (55.94%), Query Frame = 0
Query:   92 IYACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYFLAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALY 293
            +Y  +  Y +R  +L+P MR+ L+DW+MEVC  +S+HR TF  AV++ DRYLS   +   K RLQL+ +TALF+AAK++E+YPPK  D A  T GA    +++  E  +LT L W+L+P T   W   Y                 AA AP+ S    S+   L   P      +  LLDL +LD+ S+ F   +LAA+ALY
Sbjct:  179 VYCRNSSYMDRHADLQPRMRSILIDWIMEVCEVYSLHRETFYLAVDYIDRYLS-ATKNIHKTRLQLVGVTALFIAAKLEEIYPPKLSDFAYVTDGACTDDEILSQELIMLTALKWSLSPITAISWLNVYL------------QTAHAAFAPNPS----SASFFLPQYPQETFVHISQLLDLCVLDIESLEFSSGLLAASALY 363          
BLAST of EWM23597.1 vs. NCBI_GenBank
Match: gi|1191073459|ref|XP_020915522.1| (G1/S-specific cyclin-E-like [Exaiptasia pallida] >gi|999982893|gb|KXJ22039.1| G1/S-specific cyclin-E [Exaiptasia pallida])

HSP 1 Score: 137.502 bits (345), Expect = 3.416e-31
Identity = 80/206 (38.83%), Postives = 109/206 (52.91%), Query Frame = 0
Query:   93 YACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYF-LAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALYVLLP 297
            Y  D  Y      L P MR+ L+DWL+EVC  + +HR TF  AV+  DRYL++     PKQRLQL+  TALF+AAK++E+YPPK  + A  T GA    +++  E  +L  L+WNL P T + W   Y  L +L         +      P   Q+D                KV  LLDL  LD+ S+HF  S+L ++ALY +LP
Sbjct:  141 YTRDALYLRYHKNLLPRMRSILIDWLIEVCEVYRLHRETFYLAVDFIDRYLTI-KHDIPKQRLQLIGTTALFIAAKIEEIYPPKLSEFAYVTDGACTEEEILRQELVMLKDLNWNLCPVTCNTWLNIYLQLYWLSSSKDNPKAKKTNFVYPEYCQKDF--------------LKVAELLDLCSLDIGSLHFSYSILTSSALYHILP 331          
BLAST of EWM23597.1 vs. NCBI_GenBank
Match: gi|156363375|ref|XP_001626020.1| (predicted protein [Nematostella vectensis] >gi|156212880|gb|EDO33920.1| predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 129.798 bits (325), Expect = 7.295e-30
Identity = 83/208 (39.90%), Postives = 115/208 (55.29%), Query Frame = 0
Query:   93 YACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYF-LAFLERGLPAAATEMKAAS--APSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALYVLLP 297
            Y  D  Y  +   L+P MRA L+DWL+EVC  + +HR T+  AV+  DRYLS+  +  PKQRLQL+  TALF+AAK++E+YPPK  + A  T GA    +++  E  +L  L+W L P T + W   Y  L +L R    A  +    +   P  SQ            P  I  KV  LLD+  LD+ S+ F  S+LAAAA+Y ++P
Sbjct:   25 YTKDHLYLRQHPHLQPRMRAILLDWLIEVCEVYRLHRETYFLAVDFVDRYLSV-KKDIPKQRLQLVGTTALFIAAKLEEIYPPKLSEFAYVTDGACKEDEILQQELLMLQDLNWKLCPITSNTWLNIYMQLHWLSRNSCEALKDHSNFNFVIPRYSQ------------PEFI--KVSQLLDICSLDIESLQFSYSVLAAAAMYHVIP 217          
BLAST of EWM23597.1 vs. NCBI_GenBank
Match: gi|443682896|gb|ELT87331.1| (hypothetical protein CAPTEDRAFT_150088 [Capitella teleta])

HSP 1 Score: 130.954 bits (328), Expect = 1.898e-29
Identity = 81/203 (39.90%), Postives = 110/203 (54.19%), Query Frame = 0
Query:   93 YACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDL--LTTLSWNLTPPTPDDWAEWYFLAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALY 293
            Y+ DP    R   L+P MRA L+DWL+EVC  + +HR TF  A +  DRYLS+   G  KQ+LQL+ ITALF+AAK++E+YPPK  + A  T GA    D  + EQ+L  L  L W+L+P TP+ W   Y        L     E      P+      SS A +Q         +  LLDL  LD+  +H+  S+L ++ALY
Sbjct:   61 YSRDPNMLHRHPGLQPRMRAILLDWLIEVCEVYRLHRETFYLATDFIDRYLSI-TEGVEKQQLQLMGITALFIAAKLEEIYPPKIGEFAYVTDGA--CTDDCILEQELVMLKALKWDLSPMTPNSWLNIYL------QLINVDREASDEPVPNFVFPKYSSHAFVQ---------IARLLDLCTLDIECLHYPYSILTSSALY 245          
BLAST of EWM23597.1 vs. NCBI_GenBank
Match: gi|646697523|gb|KDR09184.1| (G1/S-specific cyclin-E [Zootermopsis nevadensis])

HSP 1 Score: 130.183 bits (326), Expect = 1.414e-28
Identity = 78/188 (41.49%), Postives = 105/188 (55.85%), Query Frame = 0
Query:  106 LRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYFLAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALY 293
            L+P MRA L+DWL+EVC  + +HR T+   ++  DRYLS   R  PKQ LQL+ IT LF+AAK++E+YPPK  + A  T GA    +++  E  +L TL+WNL+P T + W   Y     +    A   E      PS      S LA +Q      AQ    L+DL +LD  S+ F  S+LAA ALY
Sbjct:  146 LQPRMRAILLDWLIEVCEVYKMHRETYHLTMDFIDRYLSH-KRDVPKQHLQLIGITCLFIAAKVEEIYPPKIAEFAFVTDGACSENEILDMELIILKTLNWNLSPVTVNGWLSMYMQLCCDSRKRARQAERLGRPDPSFVFPQYSGLAFVQ-----TAQ----LVDLCMLDEGSLKFPYSVLAATALY 323          
BLAST of EWM23597.1 vs. NCBI_GenBank
Match: gi|1049295705|ref|XP_017544554.1| (PREDICTED: G1/S-specific cyclin-E1, partial [Pygocentrus nattereri])

HSP 1 Score: 126.331 bits (316), Expect = 7.641e-28
Identity = 76/207 (36.71%), Postives = 109/207 (52.66%), Query Frame = 0
Query:   92 IYACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYL----SLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYF-LAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALY 293
            +Y  D    ER   L+P MRA L+DWLMEVC  + +HR TF    ++ DR++    S+C     K  LQL+ I+ALF+AAKM+E+YPPK H  A  T GA    +++  E  ++  L W+L+P TP  W   Y  +A+L+                       S   L+   P     ++  LLDL +LDV S+ F  S+LAA+AL+
Sbjct:  128 LYPHDTHVMERHPNLQPKMRAILLDWLMEVCEVYKLHRETFYLGQDYFDRFMATQESVC-----KSTLQLIGISALFIAAKMEEIYPPKVHQFAYVTDGACTGEEILSMEVIVMKELKWSLSPLTPVAWINIYMQMAYLKD----------------------SGEVLMPQYPEATFVQIAELLDLCILDVKSLEFSYSLLAASALF 307          
BLAST of EWM23597.1 vs. NCBI_GenBank
Match: gi|525010216|ref|XP_005052736.1| (PREDICTED: G1/S-specific cyclin-E1 [Ficedula albicollis])

HSP 1 Score: 127.102 bits (318), Expect = 8.184e-28
Identity = 73/202 (36.14%), Postives = 109/202 (53.96%), Query Frame = 0
Query:   93 YACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYF-LAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLPTGIAQKVQVLLDLALLDVTSIHFFPSMLAAAALY 293
            Y  D  Y +R  +L+P MRA L+DWLMEVC  + +HR TF  A +  DR+++   +   K  LQL+ +T+LF+AAK++E+YPPK H  A  T GA    +++  E  ++  L+WNL P T   W   Y  +A+L                      DL  + L Q+ P  I  ++  LLDL +LD+  + +   +LAA+ALY
Sbjct:  124 YVRDKFYMQRHPQLQPKMRAILLDWLMEVCEAYKLHRETFYLAQDFFDRFMA-TQQDVVKTLLQLIGVTSLFIAAKLEEIYPPKLHQFAYVTDGACTEDEIISMELIIMKALNWNLNPLTVVSWLNIYLQVAYL---------------------NDLYEVMLPQY-PQQIFVQITELLDLCVLDIGCLEYTYGILAASALY 302          
BLAST of EWM23597.1 vs. NCBI_GenBank
Match: gi|449677343|ref|XP_002162252.2| (PREDICTED: G1/S-specific cyclin-E1-like [Hydra vulgaris])

HSP 1 Score: 127.487 bits (319), Expect = 1.085e-27
Identity = 79/204 (38.73%), Postives = 110/204 (53.92%), Query Frame = 0
Query:   93 YACDPCYEERQIELRPDMRAQLVDWLMEVCANFSVHRRTFQAAVNHCDRYLSLCARGFPKQRLQLLAITALFVAAKMDEVYPPKAHDLAEATAGAFHARDLVVFEQDLLTTLSWNLTPPTPDDWAEWYFLAFLERGLPAAATEMKAASAPSLSQQDLSSLALLQHLP--TGI-AQKVQVLLDLALLDVTSIHFFPSMLAAAALY 293
            Y  D  Y  R   L+P MR  L+DWL+EVC  + +HR TF  AV++ DR+LS   +   K RLQL+ +TA+FVA+KM+E+YPPK  + A  T GA    +++  E  LL+ L+W+L P TP  W   Y L    R L     E+  +                 HLP  +GI   +V  L+DL  LD   + F  S++AA+ALY
Sbjct:  158 YKRDSLYIRRHPSLQPRMRTVLLDWLIEVCEVYRLHRETFYLAVDYVDRFLS-TQKNIAKTRLQLVGVTAIFVASKMEEIYPPKLSEFAFVTDGACTDEEILQQEMILLSALNWHLCPVTPICWLTSY-LQIANRKLRQEKQEIDESF----------------HLPQFSGIHLARVTELVDLCCLDTGYLQFSYSIIAASALY 343          
The following BLAST results are available for this feature:
BLAST of EWM23597.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104738|gb|EWM23597.1|0.000e+0100.00g1 s-specific cyclin-e [Nannochloropsis gaditana][more]
gi|198417863|ref|XP_002127620.1|3.080e-3239.60PREDICTED: G1/S-specific cyclin-E1 isoform X2 [Cio... [more]
gi|198417861|ref|XP_002127570.1|3.688e-3239.60PREDICTED: G1/S-specific cyclin-E1 isoform X1 [Cio... [more]
gi|1191073459|ref|XP_020915522.1|3.416e-3138.83G1/S-specific cyclin-E-like [Exaiptasia pallida] >... [more]
gi|156363375|ref|XP_001626020.1|7.295e-3039.90predicted protein [Nematostella vectensis] >gi|156... [more]
gi|443682896|gb|ELT87331.1|1.898e-2939.90hypothetical protein CAPTEDRAFT_150088 [Capitella ... [more]
gi|646697523|gb|KDR09184.1|1.414e-2841.49G1/S-specific cyclin-E [Zootermopsis nevadensis][more]
gi|1049295705|ref|XP_017544554.1|7.641e-2836.71PREDICTED: G1/S-specific cyclin-E1, partial [Pygoc... [more]
gi|525010216|ref|XP_005052736.1|8.184e-2836.14PREDICTED: G1/S-specific cyclin-E1 [Ficedula albic... [more]
gi|449677343|ref|XP_002162252.2|1.085e-2738.73PREDICTED: G1/S-specific cyclin-E1-like [Hydra vul... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7098rna7098Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications