EWM23618.1, cds7052 (CDS) Nannochloropsis gaditana

Overview
NameEWM23618.1
Unique Namecds7052
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:374612..375325 +

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Properties
Property NameValue
Protein idEWM23618.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100137g8.20.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:374612..375325 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23618.1 vs. NCBI_GenBank
Match: gi|553180652|ref|XP_005853439.1| (hypothetical protein NGA_0427200 [Nannochloropsis gaditana CCMP526] >gi|422295621|gb|EKU22920.1| hypothetical protein NGA_0427200 [Nannochloropsis gaditana CCMP526] >gi|585104769|gb|EWM23618.1| hypothetical protein Naga_100137g8 [Nannochloropsis gaditana])

HSP 1 Score: 487.263 bits (1253), Expect = 3.118e-174
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0 
Query:    1 MITQNCPGRSGPRVAAALVIFSCFLASDFSPAPVTAFLLVSPAVPSLQKATGTPQNLLVSHLLPPSQLSSAPMTDGGTRTRSSIFPPPLMSFYGEQRRKLQEETEAKQMEWAKHFNELIVTQGQELCVCGYEGYVRSGSKGAVAVYCDDEAEGEGGAEGQGGGLHTCSSLSFTTLEELLADPRMDDGVKAQLSERVTSYEPDSEVAVLFAYNGQVGLNVLRPQYPPKFLFETLRGKK 237
            MITQNCPGRSGPRVAAALVIFSCFLASDFSPAPVTAFLLVSPAVPSLQKATGTPQNLLVSHLLPPSQLSSAPMTDGGTRTRSSIFPPPLMSFYGEQRRKLQEETEAKQMEWAKHFNELIVTQGQELCVCGYEGYVRSGSKGAVAVYCDDEAEGEGGAEGQGGGLHTCSSLSFTTLEELLADPRMDDGVKAQLSERVTSYEPDSEVAVLFAYNGQVGLNVLRPQYPPKFLFETLRGKK
Sbjct:    1 MITQNCPGRSGPRVAAALVIFSCFLASDFSPAPVTAFLLVSPAVPSLQKATGTPQNLLVSHLLPPSQLSSAPMTDGGTRTRSSIFPPPLMSFYGEQRRKLQEETEAKQMEWAKHFNELIVTQGQELCVCGYEGYVRSGSKGAVAVYCDDEAEGEGGAEGQGGGLHTCSSLSFTTLEELLADPRMDDGVKAQLSERVTSYEPDSEVAVLFAYNGQVGLNVLRPQYPPKFLFETLRGKK 237
[Close]
BLAST of EWM23618.1 vs. NCBI_GenBank
Match: gi|299115503|emb|CBN75667.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 61.2326 bits (147), Expect = 1.156e-7
Identity = 39/137 (28.47%), Postives = 67/137 (48.91%), Query Frame = 0 
Query:  104 TEAKQMEWAKHFNELIVTQGQELCVCGYEGYVRSGSKGAVAVYCD----DEAEGEGGAEGQGGGLHTCSSLSFTTLEELLAD--PRMDDGVKAQLSERVTSYEPDSEVAVLFAYNGQVGLNVLRPQYPPKFLFETLR 234
             EA + EW +    ++  +G+ LC   YEGY+  G +G + V  D       +G  GA         C S+ F +LEE++ +   R+    + Q+  R   Y+P++   ++F Y G +G+ V+RP   P  +F + R
Sbjct:  106 VEAIEREWREEMLRVLGEEGEMLCSLAYEGYLDRG-RGVIFVNVDMGLSSSNKGHDGA--------PCHSV-FCSLEEVVTERSSRVKPADQMQIIRRCQEYDPEAGFVLVFGYKGMLGVQVIRPSMAPGEVFRSRR 232
The following BLAST results are available for this feature:
BLAST of EWM23618.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|553180652|ref|XP_005853439.1|3.118e-174100.00hypothetical protein NGA_0427200 [Nannochloropsis ... [more]
gi|299115503|emb|CBN75667.1|1.156e-728.47expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7069rna7069Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications