EWM23643.1, cds7041 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|585104795|gb|EWM23643.1| (heat shock protein [Nannochloropsis gaditana]) HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query: 1 MIQLRARVGSLNGRKPAATAVLLGLFLTTGTLVHAFVPATHISKGRSSQPLSVRAWILPFQSQARFHVPLLQSAAATDDDAGKDKLEEELEHELPEGEHEEADRSTAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
MIQLRARVGSLNGRKPAATAVLLGLFLTTGTLVHAFVPATHISKGRSSQPLSVRAWILPFQSQARFHVPLLQSAAATDDDAGKDKLEEELEHELPEGEHEEADRSTAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP
Sbjct: 1 MIQLRARVGSLNGRKPAATAVLLGLFLTTGTLVHAFVPATHISKGRSSQPLSVRAWILPFQSQARFHVPLLQSAAATDDDAGKDKLEEELEHELPEGEHEEADRSTAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|375332059|gb|AFA52569.1| (heat shock protein GrpE [Vaucheria litorea]) HSP 1 Score: 121.324 bits (303), Expect = 2.012e-29 Identity = 60/179 (33.52%), Postives = 108/179 (60.34%), Query Frame = 0
Query: 115 DDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLG 293
DD+ + FL K+ E + K++A +E ++ + + EW ++ ++++FEN++A+ NDT E + + + V EI++V D+F RA A E E +++ Y+ + + + +A G+ + TVGEPFD+ LH+ + QS E+ ED++ E +KGFM+G++++RPA VA S G
Sbjct: 68 DDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVM-RQSSEFDEDIVCLELTKGFMVGKELIRPAMVAVSTG 245
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|299469792|emb|CBN76646.1| (heat shock protein GrpE [Ectocarpus siliculosus]) HSP 1 Score: 121.324 bits (303), Expect = 4.724e-29 Identity = 59/181 (32.60%), Postives = 102/181 (56.35%), Query Frame = 0
Query: 114 VDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGP 294
VDD+ NS FL K+ E ++K++ + ++ + + E EW +V ++K+F LK + + G++ I+ V D+FERA A + E ++ Y+ D ++K + LVEV T+G PFD+ +H+ + E +DE+PEDV+ + F KG+ +G+ +VRPA VA ++ P
Sbjct: 101 VDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCKVFQKGYQVGDTLVRPAMVAVAVPP 281
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|168063350|ref|XP_001783635.1| (predicted protein [Physcomitrella patens] >gi|162664825|gb|EDQ51530.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 111.309 bits (277), Expect = 1.468e-25 Identity = 62/192 (32.29%), Postives = 107/192 (55.73%), Query Frame = 0
Query: 105 STAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
+ AA A+ DV + L + ++++ ++ S+ E ++ ++++ L DF+N + + D A R V ++ +VD+FERA+ + K E E I AY+G+ ++ M + G+V V+TVG+PFD LH+ + E S E+ EDV+++EF +GF IG++++RPA V S GPGP
Sbjct: 54 AVAADDEGAISDVESQLEAIANERDSLGLKVNSLIEEISTNKDRYLRL-----------NADFDNYRKRSERDRLATAGNVRGEVIESLLPMVDNFERAKTSIKTETEAEQKIDNAYQGIYKQFVEIMKSLGVVAVETVGKPFDPNLHEAIMREDSTEFAEDVVSQEFRRGFRIGDRLLRPAMVKVSSGPGP 234
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|283484355|gb|ADB23407.1| (chloroplast CGE1 [Physcomitrella patens]) HSP 1 Score: 111.309 bits (277), Expect = 5.237e-25 Identity = 62/192 (32.29%), Postives = 107/192 (55.73%), Query Frame = 0
Query: 105 STAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
+ AA A+ DV + L + ++++ ++ S+ E ++ ++++ L DF+N + + D A R V ++ +VD+FERA+ + K E E I AY+G+ ++ M + G+V V+TVG+PFD LH+ + E S E+ EDV+++EF +GF IG++++RPA V S GPGP
Sbjct: 118 AVAADDEGAISDVESQLEAIANERDSLGLKVNSLIEEISTNKDRYLRL-----------NADFDNYRKRSERDRLATAGNVRGEVIESLLPMVDNFERAKTSIKTETEAEQKIDXAYQGIYKQFVEIMKSLGVVAVETVGKPFDPNLHEAIMREDSTEFAEDVVSQEFRRGFRIGDRLLRPAMVKVSSGPGP 298
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|769808783|ref|XP_011624342.1| (uncharacterized protein LOC18436752 [Amborella trichopoda]) HSP 1 Score: 107.842 bits (268), Expect = 1.078e-23 Identity = 59/185 (31.89%), Postives = 105/185 (56.76%), Query Frame = 0
Query: 112 NAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
+ + D+ L ++ K A+E+++ S+ L+ +EKF W ++ DFEN + + D + + +V ++ +VD+FERA+ K E+E I +Y+G+ ++ M + + V+TVG+PFD LH+ + E+S EY E +I +EF +GF++G++++RPA V S GPGP
Sbjct: 114 HKISDIETKLYAIETEKNALEQQITSLSAELSSGKEKFL-----W------LKADFENFRKRSEKDRLTLTSDVQGDVIESLLPMVDNFERAKQQLKPETEKEKKIDGSYQGIYKQFVEIMRSLKVAVVETVGKPFDPSLHEAIAREESVEYKEGIIIQEFRRGFVLGDRLLRPAMVKVSAGPGP 287
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|1200344084|gb|OUU64164.1| (nucleotide exchange factor GrpE [Synechococcus sp. TMED66]) HSP 1 Score: 106.686 bits (265), Expect = 1.101e-23 Identity = 56/204 (27.45%), Postives = 104/204 (50.98%), Query Frame = 0
Query: 93 ELPEGEHEEADRSTAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
++PE + + P + D LP Q + +E+ ++ + + ++ L+G++ + DF+N + + D +++ + + EI+ VVD+FERAR GEE + +Y+G+ ++ + G+ ++ VG+ FD LH+ + E SDE+PEDV+ E +G+ + KV+R A V S+GPGP
Sbjct: 42 DVPEAQQDLKSSVEETPGAASSDSASEGLPSAQNNEARLEQ----LEREHSTLRQEHETLSGQY----VRIAADFDNFRKRQSRDQEDLKLQITCSTLTEILPVVDNFERARQQLDPQGEEAQALHRSYQGLYKQLVDVLKQLGVAPMRVVGQEFDPSLHEAVLREPSDEHPEDVVVEELQRGYHLSGKVLRHALVKVSMGPGP 237
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|548850066|gb|ERN08618.1| (hypothetical protein AMTR_s00017p00181540 [Amborella trichopoda]) HSP 1 Score: 106.686 bits (265), Expect = 1.218e-23 Identity = 59/185 (31.89%), Postives = 105/185 (56.76%), Query Frame = 0
Query: 112 NAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
+ + D+ L ++ K A+E+++ S+ L+ +EKF W ++ DFEN + + D + + +V ++ +VD+FERA+ K E+E I +Y+G+ ++ M + + V+TVG+PFD LH+ + E+S EY E +I +EF +GF++G++++RPA V S GPGP
Sbjct: 67 HKISDIETKLYAIETEKNALEQQITSLSAELSSGKEKFL-----W------LKADFENFRKRSEKDRLTLTSDVQGDVIESLLPMVDNFERAKQQLKPETEKEKKIDGSYQGIYKQFVEIMRSLKVAVVETVGKPFDPSLHEAIAREESVEYKEGIIIQEFRRGFVLGDRLLRPAMVKVSAGPGP 240
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|971520211|dbj|GAQ77970.1| (heat shock protein GrpE [Klebsormidium nitens]) HSP 1 Score: 107.457 bits (267), Expect = 1.376e-23 Identity = 52/134 (38.81%), Postives = 81/134 (60.45%), Query Frame = 0
Query: 163 MQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
+ DF+N + + + +A + R +V E++ ++D+FERAR A K E E I +Y+G+ + + G+V V G PFD +H+ + E+S+EY E ++T+EF KGF IGEK++RPA V S GPGP
Sbjct: 168 LNADFDNFRKRSDREKASLASSVRGDVIEELLPMIDNFERARDAVKASTEGEQKIDASYQGIYKQFVDILKKLGIVPVPGAGTPFDPAVHEAIMQEESNEYAEGIVTQEFRKGFQIGEKLLRPAMVKVSSGPGP 301
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|493909444|ref|WP_006854977.1| (nucleotide exchange factor GrpE [Synechococcus sp. WH 8016] >gi|351675963|gb|EHA59121.1| Protein grpE [Synechococcus sp. WH 8016]) HSP 1 Score: 105.145 bits (261), Expect = 4.232e-23 Identity = 59/207 (28.50%), Postives = 103/207 (49.76%), Query Frame = 0
Query: 93 ELPEGEHEEADRSTAAPATNAVDDVFNSLPFLQK---RKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
++PE + + P + D V P QK R E +E+E +++ + + ++ +A DF+N + + D ++ + + EI+ VVD+FERAR GEE + +Y+G+ ++ + G+ ++ VG+ FD LH+ + E SDE+PEDV+ E +G+ + KV+R A V S+GPGP
Sbjct: 42 DVPEAQQDPTPSVEETPGAASPDAVSEGAPSEQKNEARLEQLEREHSTLRQEHETLSAQYVRIAA-----------DFDNFRKRQSRDQDDLKLQITCSTLSEILPVVDNFERARQQLDPQGEEAQSLHRSYQGLYKQLVDVLKQLGVAPMRVVGQEFDPSLHEAVLREPSDEHPEDVVVEELQRGYHLSGKVLRHALVKVSMGPGP 237 The following BLAST results are available for this feature:
BLAST of EWM23643.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|