EWM23643.1, cds7041 (CDS) Nannochloropsis gaditana

Overview
NameEWM23643.1
Unique Namecds7041
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:342605..343495 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23643.1
Productheat shock protein
Orig transcript idgnl|cribi|Naga_100165g2.9695.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:342605..343495 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0051087chaperone binding
GO:0000774adenyl-nucleotide exchange factor activity
GO:0042803protein homodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
Vocabulary: INTERPRO
TermDefinition
IPR009012GrpE_head
IPR013805GrpE_coiled_coil
IPR000740GrpE
Homology
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|585104795|gb|EWM23643.1| (heat shock protein [Nannochloropsis gaditana])

HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query:    1 MIQLRARVGSLNGRKPAATAVLLGLFLTTGTLVHAFVPATHISKGRSSQPLSVRAWILPFQSQARFHVPLLQSAAATDDDAGKDKLEEELEHELPEGEHEEADRSTAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
            MIQLRARVGSLNGRKPAATAVLLGLFLTTGTLVHAFVPATHISKGRSSQPLSVRAWILPFQSQARFHVPLLQSAAATDDDAGKDKLEEELEHELPEGEHEEADRSTAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP
Sbjct:    1 MIQLRARVGSLNGRKPAATAVLLGLFLTTGTLVHAFVPATHISKGRSSQPLSVRAWILPFQSQARFHVPLLQSAAATDDDAGKDKLEEELEHELPEGEHEEADRSTAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296          
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|375332059|gb|AFA52569.1| (heat shock protein GrpE [Vaucheria litorea])

HSP 1 Score: 121.324 bits (303), Expect = 2.012e-29
Identity = 60/179 (33.52%), Postives = 108/179 (60.34%), Query Frame = 0
Query:  115 DDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLG 293
            DD+  +  FL K+ E + K++A  +E ++    +  +   EW  ++  ++++FEN++A+  NDT E + + +  V  EI++V D+F RA  A     E E  +++ Y+ + + +    +A G+  + TVGEPFD+ LH+ +   QS E+ ED++  E +KGFM+G++++RPA VA S G
Sbjct:   68 DDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVM-RQSSEFDEDIVCLELTKGFMVGKELIRPAMVAVSTG 245          
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|299469792|emb|CBN76646.1| (heat shock protein GrpE [Ectocarpus siliculosus])

HSP 1 Score: 121.324 bits (303), Expect = 4.724e-29
Identity = 59/181 (32.60%), Postives = 102/181 (56.35%), Query Frame = 0
Query:  114 VDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGP 294
            VDD+ NS  FL K+ E ++K++ +   ++   + +  E   EW  +V  ++K+F  LK +      +    G++     I+ V D+FERA  A     + E  ++  Y+   D ++K +    LVEV T+G PFD+ +H+ +  E +DE+PEDV+ + F KG+ +G+ +VRPA VA ++ P
Sbjct:  101 VDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCKVFQKGYQVGDTLVRPAMVAVAVPP 281          
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|168063350|ref|XP_001783635.1| (predicted protein [Physcomitrella patens] >gi|162664825|gb|EDQ51530.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 111.309 bits (277), Expect = 1.468e-25
Identity = 62/192 (32.29%), Postives = 107/192 (55.73%), Query Frame = 0
Query:  105 STAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
            + AA    A+ DV + L  +   ++++  ++ S+ E ++  ++++  L             DF+N + +   D    A   R  V   ++ +VD+FERA+ + K   E E  I  AY+G+    ++ M + G+V V+TVG+PFD  LH+ +  E S E+ EDV+++EF +GF IG++++RPA V  S GPGP
Sbjct:   54 AVAADDEGAISDVESQLEAIANERDSLGLKVNSLIEEISTNKDRYLRL-----------NADFDNYRKRSERDRLATAGNVRGEVIESLLPMVDNFERAKTSIKTETEAEQKIDNAYQGIYKQFVEIMKSLGVVAVETVGKPFDPNLHEAIMREDSTEFAEDVVSQEFRRGFRIGDRLLRPAMVKVSSGPGP 234          
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|283484355|gb|ADB23407.1| (chloroplast CGE1 [Physcomitrella patens])

HSP 1 Score: 111.309 bits (277), Expect = 5.237e-25
Identity = 62/192 (32.29%), Postives = 107/192 (55.73%), Query Frame = 0
Query:  105 STAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
            + AA    A+ DV + L  +   ++++  ++ S+ E ++  ++++  L             DF+N + +   D    A   R  V   ++ +VD+FERA+ + K   E E  I  AY+G+    ++ M + G+V V+TVG+PFD  LH+ +  E S E+ EDV+++EF +GF IG++++RPA V  S GPGP
Sbjct:  118 AVAADDEGAISDVESQLEAIANERDSLGLKVNSLIEEISTNKDRYLRL-----------NADFDNYRKRSERDRLATAGNVRGEVIESLLPMVDNFERAKTSIKTETEAEQKIDXAYQGIYKQFVEIMKSLGVVAVETVGKPFDPNLHEAIMREDSTEFAEDVVSQEFRRGFRIGDRLLRPAMVKVSSGPGP 298          
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|769808783|ref|XP_011624342.1| (uncharacterized protein LOC18436752 [Amborella trichopoda])

HSP 1 Score: 107.842 bits (268), Expect = 1.078e-23
Identity = 59/185 (31.89%), Postives = 105/185 (56.76%), Query Frame = 0
Query:  112 NAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
            + + D+   L  ++  K A+E+++ S+   L+  +EKF      W      ++ DFEN + +   D   +    + +V   ++ +VD+FERA+   K   E+E  I  +Y+G+    ++ M +  +  V+TVG+PFD  LH+ +  E+S EY E +I +EF +GF++G++++RPA V  S GPGP
Sbjct:  114 HKISDIETKLYAIETEKNALEQQITSLSAELSSGKEKFL-----W------LKADFENFRKRSEKDRLTLTSDVQGDVIESLLPMVDNFERAKQQLKPETEKEKKIDGSYQGIYKQFVEIMRSLKVAVVETVGKPFDPSLHEAIAREESVEYKEGIIIQEFRRGFVLGDRLLRPAMVKVSAGPGP 287          
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|1200344084|gb|OUU64164.1| (nucleotide exchange factor GrpE [Synechococcus sp. TMED66])

HSP 1 Score: 106.686 bits (265), Expect = 1.101e-23
Identity = 56/204 (27.45%), Postives = 104/204 (50.98%), Query Frame = 0
Query:   93 ELPEGEHEEADRSTAAPATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
            ++PE + +        P   + D     LP  Q  +  +E+    ++   + + ++   L+G++      +  DF+N + +   D +++ +    +   EI+ VVD+FERAR      GEE   +  +Y+G+   ++  +   G+  ++ VG+ FD  LH+ +  E SDE+PEDV+  E  +G+ +  KV+R A V  S+GPGP
Sbjct:   42 DVPEAQQDLKSSVEETPGAASSDSASEGLPSAQNNEARLEQ----LEREHSTLRQEHETLSGQY----VRIAADFDNFRKRQSRDQEDLKLQITCSTLTEILPVVDNFERARQQLDPQGEEAQALHRSYQGLYKQLVDVLKQLGVAPMRVVGQEFDPSLHEAVLREPSDEHPEDVVVEELQRGYHLSGKVLRHALVKVSMGPGP 237          
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|548850066|gb|ERN08618.1| (hypothetical protein AMTR_s00017p00181540 [Amborella trichopoda])

HSP 1 Score: 106.686 bits (265), Expect = 1.218e-23
Identity = 59/185 (31.89%), Postives = 105/185 (56.76%), Query Frame = 0
Query:  112 NAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
            + + D+   L  ++  K A+E+++ S+   L+  +EKF      W      ++ DFEN + +   D   +    + +V   ++ +VD+FERA+   K   E+E  I  +Y+G+    ++ M +  +  V+TVG+PFD  LH+ +  E+S EY E +I +EF +GF++G++++RPA V  S GPGP
Sbjct:   67 HKISDIETKLYAIETEKNALEQQITSLSAELSSGKEKFL-----W------LKADFENFRKRSEKDRLTLTSDVQGDVIESLLPMVDNFERAKQQLKPETEKEKKIDGSYQGIYKQFVEIMRSLKVAVVETVGKPFDPSLHEAIAREESVEYKEGIIIQEFRRGFVLGDRLLRPAMVKVSAGPGP 240          
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|971520211|dbj|GAQ77970.1| (heat shock protein GrpE [Klebsormidium nitens])

HSP 1 Score: 107.457 bits (267), Expect = 1.376e-23
Identity = 52/134 (38.81%), Postives = 81/134 (60.45%), Query Frame = 0
Query:  163 MQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
            +  DF+N + +   +   +A + R +V  E++ ++D+FERAR A K   E E  I  +Y+G+    +  +   G+V V   G PFD  +H+ +  E+S+EY E ++T+EF KGF IGEK++RPA V  S GPGP
Sbjct:  168 LNADFDNFRKRSDREKASLASSVRGDVIEELLPMIDNFERARDAVKASTEGEQKIDASYQGIYKQFVDILKKLGIVPVPGAGTPFDPAVHEAIMQEESNEYAEGIVTQEFRKGFQIGEKLLRPAMVKVSSGPGP 301          
BLAST of EWM23643.1 vs. NCBI_GenBank
Match: gi|493909444|ref|WP_006854977.1| (nucleotide exchange factor GrpE [Synechococcus sp. WH 8016] >gi|351675963|gb|EHA59121.1| Protein grpE [Synechococcus sp. WH 8016])

HSP 1 Score: 105.145 bits (261), Expect = 4.232e-23
Identity = 59/207 (28.50%), Postives = 103/207 (49.76%), Query Frame = 0
Query:   93 ELPEGEHEEADRSTAAPATNAVDDVFNSLPFLQK---RKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
            ++PE + +        P   + D V    P  QK   R E +E+E +++ +    +  ++  +A            DF+N + +   D  ++ +    +   EI+ VVD+FERAR      GEE   +  +Y+G+   ++  +   G+  ++ VG+ FD  LH+ +  E SDE+PEDV+  E  +G+ +  KV+R A V  S+GPGP
Sbjct:   42 DVPEAQQDPTPSVEETPGAASPDAVSEGAPSEQKNEARLEQLEREHSTLRQEHETLSAQYVRIAA-----------DFDNFRKRQSRDQDDLKLQITCSTLSEILPVVDNFERARQQLDPQGEEAQSLHRSYQGLYKQLVDVLKQLGVAPMRVVGQEFDPSLHEAVLREPSDEHPEDVVVEELQRGYHLSGKVLRHALVKVSMGPGP 237          
The following BLAST results are available for this feature:
BLAST of EWM23643.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104795|gb|EWM23643.1|0.000e+0100.00heat shock protein [Nannochloropsis gaditana][more]
gi|375332059|gb|AFA52569.1|2.012e-2933.52heat shock protein GrpE [Vaucheria litorea][more]
gi|299469792|emb|CBN76646.1|4.724e-2932.60heat shock protein GrpE [Ectocarpus siliculosus][more]
gi|168063350|ref|XP_001783635.1|1.468e-2532.29predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|283484355|gb|ADB23407.1|5.237e-2532.29chloroplast CGE1 [Physcomitrella patens][more]
gi|769808783|ref|XP_011624342.1|1.078e-2331.89uncharacterized protein LOC18436752 [Amborella tri... [more]
gi|1200344084|gb|OUU64164.1|1.101e-2327.45nucleotide exchange factor GrpE [Synechococcus sp.... [more]
gi|548850066|gb|ERN08618.1|1.218e-2331.89hypothetical protein AMTR_s00017p00181540 [Amborel... [more]
gi|971520211|dbj|GAQ77970.1|1.376e-2338.81heat shock protein GrpE [Klebsormidium nitens][more]
gi|493909444|ref|WP_006854977.1|4.232e-2328.50nucleotide exchange factor GrpE [Synechococcus sp.... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7058rna7058Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications