EWM23653.1, cds7025 (CDS) Nannochloropsis gaditana

Overview
NameEWM23653.1
Unique Namecds7025
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:307969..308493 +
Alignment locationCM002470.1:308669..308809 +
Alignment locationCM002470.1:308924..309207 +
Alignment locationCM002470.1:309328..309508 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23653.1
Productpeptidase s41
Orig transcript idgnl|cribi|Naga_100191g3.7763.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:307969..308493 +
CM002470.1supercontigCM002470.1:308669..308809 +
CM002470.1supercontigCM002470.1:308924..309207 +
CM002470.1supercontigCM002470.1:309328..309508 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR001440TPR_1
IPR019734TPR_repeat
Homology
BLAST of EWM23653.1 vs. NCBI_GenBank
Match: gi|585104806|gb|EWM23653.1| (peptidase s41 [Nannochloropsis gaditana])

HSP 1 Score: 767.689 bits (1981), Expect = 0.000e+0
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0
Query:    1 MPRSYRPAIFWLLLAVALPVCPSTAAFAWHSIRPPTELTADSPRYPSSISCSRGSTHRFADRRRDQRINSDLMKSSPSKAAPSAFCKFSPLLFGFLPVLAPAAASFTPTPAHAVSAPVAVSFSIISTKGPTALVAATDMVLKEDEMKADGEEVQRLMGRVEPIDRLGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPSKTGDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVGWGRGRERGQMTLRLSF 376
            MPRSYRPAIFWLLLAVALPVCPSTAAFAWHSIRPPTELTADSPRYPSSISCSRGSTHRFADRRRDQRINSDLMKSSPSKAAPSAFCKFSPLLFGFLPVLAPAAASFTPTPAHAVSAPVAVSFSIISTKGPTALVAATDMVLKEDEMKADGEEVQRLMGRVEPIDRLGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPSKTGDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVGWGRGRERGQMTLRLSF
Sbjct:    1 MPRSYRPAIFWLLLAVALPVCPSTAAFAWHSIRPPTELTADSPRYPSSISCSRGSTHRFADRRRDQRINSDLMKSSPSKAAPSAFCKFSPLLFGFLPVLAPAAASFTPTPAHAVSAPVAVSFSIISTKGPTALVAATDMVLKEDEMKADGEEVQRLMGRVEPIDRLGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPSKTGDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVGWGRGRERGQMTLRLSF 376          
BLAST of EWM23653.1 vs. NCBI_GenBank
Match: gi|298708575|emb|CBJ30660.1| (TPR domain-containing protein [Ectocarpus siliculosus])

HSP 1 Score: 157.918 bits (398), Expect = 1.798e-40
Identity = 76/177 (42.94%), Postives = 112/177 (63.28%), Query Frame = 0
Query:  185 EFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPS-KTGDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVG 360
            +F+KA +LY++V + APGY Y WSN+ N  IA GDL+  +  Y RA++L       D W++YLN+ TT +AL   D A+ DL+ A  L    D+   AN+  A ER+GD A+AL +YE A+  +P +VQPWW+RYS+VLFQE +D  ++  +++V  KF  V E + A+ +   G G
Sbjct:  187 QFDKAKKLYNQVVKYAPGYVYGWSNRANVLIAEGDLKAAVSDYDRALQLAEGIYMPDKWIIYLNRGTTLMALGDDDRAMSDLNQAAKLNTSKDLYTLANRAQAFERRGDWAKALADYEGAINVQPGNVQPWWIRYSLVLFQEGRDFDSLAFLKRVQAKFEGVGEVQAAMTAIEFGRG 363          
BLAST of EWM23653.1 vs. NCBI_GenBank
Match: gi|873230233|emb|CEM11327.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 128.257 bits (321), Expect = 9.478e-30
Identity = 97/344 (28.20%), Postives = 165/344 (47.97%), Query Frame = 0
Query:   32 IRPPTELTADSPRYPSSISCSRGSTHRF-----ADRRRDQRINSDLMKSSPSKAAPSAFCKFSPLLFGFLPVLAPAAASFTPTPAHAVSAPVAVSFSIISTKGPTALVAATDMVLKEDEMKADGEEVQRLMGRVEPIDRLGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLP---SKTGDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVGWGRGRER 367
            +RP  +L +      S+I+  R S+ RF     A+ ++  R++   M   PS    +       L F F+   + A+ S TPT  H  ++ +        + G       + + L E+ +             V+P  R+  EA G++++AR A  +  ++ A+ L +RVT+ AP YAY +S+ G A    G+  + L   +RA++L     +   D W VYL +    L L     A++DLD A+ LRG+PD L+  ++  AL++ G  ++A  +YE AV     D QP+WLRY + L ++ + +++  +MR+V  KF    E   A ++     G   G  R
Sbjct:   37 LRPAFQLPSVRAGALSTIARRRHSSQRFSTSPVAEAQQRCRLDDAAM---PSALRDALRLGLLLLSFIFIMPASEASTSLTPTGLHGHNSHL--------SSGDQGTAGLSTVWLSENPVA------------VDPT-RISGEAGGVYRKARAALEEGRWDDAVILLERVTKAAPNYAYGYSSLGTAKANRGEPREALVELTRAIDLFREGRATPSDLWTVYLQRGNIRLTLKECSTAVEDLDEAKRLRGRPDALVLTSRAQALDQCGRWSEAAADYEGAVGLLASDPQPFWLRYCLALLEQNRVLESFGIMRRVQSKFPDAAEVNAATSAIYFTRGDKEGSAR 356          
BLAST of EWM23653.1 vs. NCBI_GenBank
Match: gi|1210519711|dbj|GAX21480.1| (hypothetical protein FisN_10Hh060 [Fistulifera solaris])

HSP 1 Score: 120.168 bits (300), Expect = 1.568e-27
Identity = 71/212 (33.49%), Postives = 109/212 (51.42%), Query Frame = 0
Query:  165 RLGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPS-KTGDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVGWGRGRERGQMTLRLS 375
            +L  +A+ IF   R  E       A RLY +VT++AP + Y WS+ GN   A GDL     SY+++++L       D +++YLN+ T  L  +R   A+ DL LA  LRG+PD ++  N   A E  G   +A  NY+ A+      V P+WLR +MV FQ  +  +  ++++++  +F    E K   AS     G G+  E  Q  L +S
Sbjct:   67 QLTGDAKKIFGEGRALELQGNLMAAQRLYGKVTQMAPNFVYGWSSLGNTQTAFGDLAAAEVSYTKSIDLCTQVDCSDQYVLYLNRGTIRLNTNRPAEALADLRLAATLRGRPDDIVLQNLARACELNGLYEEADRNYDVAIRMTGNQVSPYWLRAAMVKFQLNEKQQGYDLLKRIENRFPDAPEVKA--ASAVFLAGTGKMVEAQQKFLEIS 276          
BLAST of EWM23653.1 vs. NCBI_GenBank
Match: gi|1210523883|dbj|GAX17207.1| (hypothetical protein FisN_10Lh060 [Fistulifera solaris])

HSP 1 Score: 118.242 bits (295), Expect = 3.870e-27
Identity = 70/212 (33.02%), Postives = 109/212 (51.42%), Query Frame = 0
Query:  165 RLGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPS-KTGDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVGWGRGRERGQMTLRLS 375
            +L  +A+ IF   R  E       A RLY +VT++AP + Y WS+ GN   A G+L     SY+++++L       D +++YLN+ T  L  +R   A+ DL LA  LRG+PD ++  N   A E  G   +A  NY+ A+      V P+WLR +MV FQ  +  +  ++++++  +F    E K   AS     G G+  E  Q  L +S
Sbjct:   29 QLTGDAKKIFGEGRALELQGNLMAAQRLYGKVTQMAPNFVYGWSSLGNTQTAFGNLAAAEVSYTKSIDLCTQVNCNDQYVLYLNRGTIRLNTNRPAEALADLRLAATLRGRPDDIVLQNLARACELNGLYEEADRNYDVAIRMTGNQVSPYWLRAAMVKFQLNEKQQGYDLLKRIENRFPDAPEVKA--ASAVFLAGTGKMVEAQQKFLEIS 238          
BLAST of EWM23653.1 vs. NCBI_GenBank
Match: gi|545710705|ref|XP_005707660.1| (hypothetical protein Gasu_16360 [Galdieria sulphuraria] >gi|452824135|gb|EME31140.1| hypothetical protein Gasu_16360 [Galdieria sulphuraria])

HSP 1 Score: 109.383 bits (272), Expect = 2.791e-23
Identity = 59/202 (29.21%), Postives = 112/202 (55.45%), Query Frame = 0
Query:  164 DRLGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPSKTGDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVGWGRGR 365
            +++  +   IF +A+      EF  A +LY ++ +  P +A A+SN  N  I  G   + + +Y+RA+EL P  + D W+VYLN+A T +AL  ++ A+ D++ A   + + D L+ + + L    +G   +A   ++ AV ++P +VQP+W  Y M+LF++ +  +A  ++ +V  K+ ++ +  V LA    G+ +  G 
Sbjct:  119 NKITGKGAKIFSKAKKLAELEEFSAAEKLYQQLIQEEPTFAPAYSNLANIQIIFGKYSQAITNYTRALELAPL-SNDTWIVYLNRANTWIALRDIEKAMADIEQAAQWKPK-DSLILSTRALLFAYEGKWDEAFLEFQNAVESRPNEVQPFWFNYGMLLFEKSKSFEARSIIYRVAQKYPKLSDIHVVLA----GIEYAEGN 314          
BLAST of EWM23653.1 vs. NCBI_GenBank
Match: gi|544209290|ref|XP_005535048.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449015360|dbj|BAM78762.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 110.923 bits (276), Expect = 4.852e-23
Identity = 67/203 (33.00%), Postives = 107/203 (52.71%), Query Frame = 0
Query:  173 IFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELL------PSKTGDA--------------WLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGK--FGRVEETKVALA 353
            +F RA+  E + EF++AL++Y  V    PG  +A++N+ N Y  LG  ++ L  Y++A+ LL         TGD               W++YLN+AT    L R   A++D++ A  +R   + LL  N+ +          AL +Y+ AV  +P DVQP+W+ Y++ LFQ  +D  A+ +MR+V  K  F + +E K A A
Sbjct:  279 LFSRAQRLEDEGEFQEALKIYASVVDREPGLVWAYANRANLYSRLGQYDQALADYTQAIRLLCKTVSGNESTGDERLTDADAPCLERELWVLYLNRATVYRTLRRHQEALRDMNRALSIRPY-EPLLLVNRAMVYVDLAKYDAALLDYQRAVERRPGDVQPFWVDYALTLFQRGRDTDALGIMRRVASKPSFAQSDEVKAAYA 480          
BLAST of EWM23653.1 vs. NCBI_GenBank
Match: gi|223993927|ref|XP_002286647.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977962|gb|EED96288.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 107.457 bits (267), Expect = 9.276e-23
Identity = 65/206 (31.55%), Postives = 102/206 (49.51%), Query Frame = 0
Query:  166 LGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPS--KTGDA---------WLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALASKCLGVG 360
            L  +A+  F   R  EA      A RLY +VT+++P + Y WS+ GN  +A G+L    ++Y++A+ L     K GD+         +L+ LN+ +  L       A+ DL  +  LR +PD ++  N   A E      Q+  +Y+ A+     +V P+WLR SMV +Q      AM++MR+V  +F    E + A A   LG G
Sbjct:   69 LTGDAKKRFNEGRALEAQGNILAAQRLYTKVTKISPTFIYGWSSLGNTLVAQGELNPAEETYTKAINLCEESLKGGDSFGTKRCDDLYLLLLNRGSVRLNNGMTKEALVDLQKSDTLRARPDAIILQNLARAQEVNAQFYQSDRSYDTAISMTANEVNPFWLRSSMVKYQLDNVTGAMDLMRRVENRFPEAPEVRAAYAVLLLGRG 274          
BLAST of EWM23653.1 vs. NCBI_GenBank
Match: gi|546296956|ref|XP_005710066.1| (TPR repeat-containing protein [Chondrus crispus] >gi|507106088|emb|CDF39772.1| TPR repeat-containing protein [Chondrus crispus])

HSP 1 Score: 107.842 bits (268), Expect = 1.321e-22
Identity = 83/282 (29.43%), Postives = 142/282 (50.35%), Query Frame = 0
Query:   73 MKSSPSKAAPSAFCKFSPLLFGFLPVLAPAAASFTPTPAHAVSAPVAVSFSIISTKGPTALVAATDMVLKEDEMKADGEEVQRLMGRVEPIDRLGQEAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPSKTGDAWLVYLNKATTELAL-DRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALA 353
            + S  S    +AF + S  + G    +A + AS T +P H   A   V+ +   T+  T    ++   L  +E KA  EE +R         R   +    F  AR      +  +AL  YD +T+  P +A A+SN+GN + A    ++ +  Y R++EL P    D+W+V++N+  T+LA  D    A+ D+++A  LR   D++L +N+    E  G    A+ +Y+ A+  +  DVQP+W RY +VLFQ  +  +A+ ++++V  +F  V +   A+A
Sbjct:   61 LASVASSTPLNAFNRISVGIAGVALAIALSNAS-TFSPHHHGDAHFVVASAFAETETATNFSVSS---LSVEERKALREESRRHT-------RAAGKVAQNFALARRQALAGDIPEALSTYDAITKSDPDFAPAYSNRGNIFAAQKKFDQAITEYDRSLELAPLD-NDSWVVFVNRGVTKLARGDDPYIALADMNIANELRAGNDIIL-SNRAGVWEVMGKWDNAIRDYQAAL--QSNDVQPFWERYGLVLFQRNKSYEALSILKRVATRFD-VSDVHAAMA 326          
BLAST of EWM23653.1 vs. NCBI_GenBank
Match: gi|219120817|ref|XP_002185640.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582489|gb|ACI65110.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 103.99 bits (258), Expect = 1.410e-21
Identity = 62/197 (31.47%), Postives = 96/197 (48.73%), Query Frame = 0
Query:  169 EAEGIFKRARIAEADNEFEKALRLYDRVTRVAPGYAYAWSNKGNAYIALGDLEKGLDSYSRAVELLPS------------KTGDAWLVYLNKATTELALDRLDAAIQDLDLARVLRGQPDMLLFANKGLALERKGDLAQALENYEFAVLTKPKDVQPWWLRYSMVLFQEQQDIKAMEVMRKVVGKFGRVEETKVALA 353
            +A+ +F  AR  E+      A RLY +VT+++P + Y WSN  N   ALGDL     +YS A++L               +  D +++ LN+ +  L   R   A+ DL  + +LRG+PD  +  N   A E  G   QA  +Y  A+     +V P+WLR S+V FQ        ++M++V  +F    E + A A
Sbjct:   73 DAKKLFNEARALESQGNMAAAQRLYTKVTKISPRFIYGWSNLANTQTALGDLRSADQAYSIAIDLCNENLQTTEEGFGIKRCNDLYVLLLNRGSLRLNDGRPKEALADLQQSDLLRGRPDSTVLQNLARAKELNGLYKQADNDYTVAISMTANEVNPFWLRSSLVKFQLGDIQGGYDLMKRVENRFPEAPEVRAAYA 269          
The following BLAST results are available for this feature:
BLAST of EWM23653.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104806|gb|EWM23653.1|0.000e+0100.00peptidase s41 [Nannochloropsis gaditana][more]
gi|298708575|emb|CBJ30660.1|1.798e-4042.94TPR domain-containing protein [Ectocarpus siliculo... [more]
gi|873230233|emb|CEM11327.1|9.478e-3028.20unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210519711|dbj|GAX21480.1|1.568e-2733.49hypothetical protein FisN_10Hh060 [Fistulifera sol... [more]
gi|1210523883|dbj|GAX17207.1|3.870e-2733.02hypothetical protein FisN_10Lh060 [Fistulifera sol... [more]
gi|545710705|ref|XP_005707660.1|2.791e-2329.21hypothetical protein Gasu_16360 [Galdieria sulphur... [more]
gi|544209290|ref|XP_005535048.1|4.852e-2333.00hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|223993927|ref|XP_002286647.1|9.276e-2331.55predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|546296956|ref|XP_005710066.1|1.321e-2229.43TPR repeat-containing protein [Chondrus crispus] >... [more]
gi|219120817|ref|XP_002185640.1|1.410e-2131.47predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7042rna7042Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications