EWM23654.1, cds7024 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23654.1
Unique Name	cds7024
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002470.1:307270..307500 -
Alignment location	CM002470.1:307074..307168 -
Alignment location	CM002470.1:303633..306894 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23654.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100191g4.7764.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:307270..307500 -
CM002470.1	supercontig	CM002470.1:307074..307168 -
CM002470.1	supercontig	CM002470.1:303633..306894 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR011989	ARM-like

Homology

[Close]

BLAST of EWM23654.1 vs. NCBI_GenBank
Match: gi|585104807|gb|EWM23654.1| (hypothetical protein Naga_100191g4 [Nannochloropsis gaditana])

HSP 1 Score: 2427.13 bits (6289), Expect = 0.000e+0
Identity = 1195/1195 (100.00%), Postives = 1195/1195 (100.00%), Query Frame = 0

Query:    1 MEALLLELLHRVKELYDSIPGSPTQREADRWLTSFVHVEGAWDVLLHVLSRAVGCLPLNPTQPIDVRLLFISTKILQLKIQLGWRTCNPGTQAAIQQCLSSRLQQEMLGTAVPQAPIVHNQMVLAFVHMLLQMLAEKKDASGPSFVLSLTHMVGITGMPDVVSQTKALLLVFEILKCMPEEYNRRDPGRTRRDRSTVHLQQADTLLMLELTRTVVDQCDELMDLRVGCQAQTQTPEAREAGLKVKLAALQCLRSWSEHTTLEVGWVSPTEMMTGGVLGTLKRQASLVQRGQALPAEMYVLVLQIMTDSFRSHSFFTSDPKGPPGSPEEATLCKRAFGAMARLVVGMGRIVTPPKHPYADTEEAARSACDALTTLLQLHLAPMFQHYRDRLRGTSEGESELALFRELLQLLVQFTGHRDLSGVAEPPLELWYFLPELLDWQEAPSPEARAFLAEMVPALVETIHGQCAAPRSWGEREWGLAFMNRSARKSQAGQEAAGSGEETDWDHFMDKVYFRTSANDVIEAMASTWPEKHRPGEILYTIMTRCSSDPLAIEAVLLCLTGVARGLQSGDRYYDTEDEEKGEEGEGEGEEEGGYYGYQEAEGTRGGREEDEKLREERAEQRQPALWLGVLQASTSLQDPAECFYLWRAACVLIQELAHVYLKDLAAPSLVEHVISFLIRALGHRLTGSAAALALKRVVSATCSKAQGCLEAGKEGATKQRLIACLHQALILRPSRADDLSVLATQPAAYANVVEALVLLVLATVSAVNEHTAPVLLEQLGAVTVLVLDSGPAGGRASLAQVLVSIISGVRRGGGLSLIDTLLQRAWQPIDQVIFGPLTESENPSKAIDAACRVLGACLRAVTDKATFLPLLLTRLRPLIDLNMQVLERYREALTPAAALQHGRPAPQDMSEVLLWPAPVRFLRKVLAAGARTPVEGWWPAFQGATDSLCRLVSFGLAIKIGDEDESGNQVRRQYLVDFYAELFGFMRDMILVTLDGAPPTSLLAEDPICLRRGLEVAIMALDLPLENSLCLTKALAYLEAAFRLLSEDSVVSALHDLSPRLVLALFKMLVSTANMPTNVKRATADVLYNALFVDGRGGSTRVSLLFQEALSILLASEGMTHLRSLLGKDNAAVDWLRQSFSAVLREAPVGPPKRVLMDLVKCFAGLGRNEMTLEEVRESVERNQASASIFPDLAM 1195
            MEALLLELLHRVKELYDSIPGSPTQREADRWLTSFVHVEGAWDVLLHVLSRAVGCLPLNPTQPIDVRLLFISTKILQLKIQLGWRTCNPGTQAAIQQCLSSRLQQEMLGTAVPQAPIVHNQMVLAFVHMLLQMLAEKKDASGPSFVLSLTHMVGITGMPDVVSQTKALLLVFEILKCMPEEYNRRDPGRTRRDRSTVHLQQADTLLMLELTRTVVDQCDELMDLRVGCQAQTQTPEAREAGLKVKLAALQCLRSWSEHTTLEVGWVSPTEMMTGGVLGTLKRQASLVQRGQALPAEMYVLVLQIMTDSFRSHSFFTSDPKGPPGSPEEATLCKRAFGAMARLVVGMGRIVTPPKHPYADTEEAARSACDALTTLLQLHLAPMFQHYRDRLRGTSEGESELALFRELLQLLVQFTGHRDLSGVAEPPLELWYFLPELLDWQEAPSPEARAFLAEMVPALVETIHGQCAAPRSWGEREWGLAFMNRSARKSQAGQEAAGSGEETDWDHFMDKVYFRTSANDVIEAMASTWPEKHRPGEILYTIMTRCSSDPLAIEAVLLCLTGVARGLQSGDRYYDTEDEEKGEEGEGEGEEEGGYYGYQEAEGTRGGREEDEKLREERAEQRQPALWLGVLQASTSLQDPAECFYLWRAACVLIQELAHVYLKDLAAPSLVEHVISFLIRALGHRLTGSAAALALKRVVSATCSKAQGCLEAGKEGATKQRLIACLHQALILRPSRADDLSVLATQPAAYANVVEALVLLVLATVSAVNEHTAPVLLEQLGAVTVLVLDSGPAGGRASLAQVLVSIISGVRRGGGLSLIDTLLQRAWQPIDQVIFGPLTESENPSKAIDAACRVLGACLRAVTDKATFLPLLLTRLRPLIDLNMQVLERYREALTPAAALQHGRPAPQDMSEVLLWPAPVRFLRKVLAAGARTPVEGWWPAFQGATDSLCRLVSFGLAIKIGDEDESGNQVRRQYLVDFYAELFGFMRDMILVTLDGAPPTSLLAEDPICLRRGLEVAIMALDLPLENSLCLTKALAYLEAAFRLLSEDSVVSALHDLSPRLVLALFKMLVSTANMPTNVKRATADVLYNALFVDGRGGSTRVSLLFQEALSILLASEGMTHLRSLLGKDNAAVDWLRQSFSAVLREAPVGPPKRVLMDLVKCFAGLGRNEMTLEEVRESVERNQASASIFPDLAM
Sbjct:    1 MEALLLELLHRVKELYDSIPGSPTQREADRWLTSFVHVEGAWDVLLHVLSRAVGCLPLNPTQPIDVRLLFISTKILQLKIQLGWRTCNPGTQAAIQQCLSSRLQQEMLGTAVPQAPIVHNQMVLAFVHMLLQMLAEKKDASGPSFVLSLTHMVGITGMPDVVSQTKALLLVFEILKCMPEEYNRRDPGRTRRDRSTVHLQQADTLLMLELTRTVVDQCDELMDLRVGCQAQTQTPEAREAGLKVKLAALQCLRSWSEHTTLEVGWVSPTEMMTGGVLGTLKRQASLVQRGQALPAEMYVLVLQIMTDSFRSHSFFTSDPKGPPGSPEEATLCKRAFGAMARLVVGMGRIVTPPKHPYADTEEAARSACDALTTLLQLHLAPMFQHYRDRLRGTSEGESELALFRELLQLLVQFTGHRDLSGVAEPPLELWYFLPELLDWQEAPSPEARAFLAEMVPALVETIHGQCAAPRSWGEREWGLAFMNRSARKSQAGQEAAGSGEETDWDHFMDKVYFRTSANDVIEAMASTWPEKHRPGEILYTIMTRCSSDPLAIEAVLLCLTGVARGLQSGDRYYDTEDEEKGEEGEGEGEEEGGYYGYQEAEGTRGGREEDEKLREERAEQRQPALWLGVLQASTSLQDPAECFYLWRAACVLIQELAHVYLKDLAAPSLVEHVISFLIRALGHRLTGSAAALALKRVVSATCSKAQGCLEAGKEGATKQRLIACLHQALILRPSRADDLSVLATQPAAYANVVEALVLLVLATVSAVNEHTAPVLLEQLGAVTVLVLDSGPAGGRASLAQVLVSIISGVRRGGGLSLIDTLLQRAWQPIDQVIFGPLTESENPSKAIDAACRVLGACLRAVTDKATFLPLLLTRLRPLIDLNMQVLERYREALTPAAALQHGRPAPQDMSEVLLWPAPVRFLRKVLAAGARTPVEGWWPAFQGATDSLCRLVSFGLAIKIGDEDESGNQVRRQYLVDFYAELFGFMRDMILVTLDGAPPTSLLAEDPICLRRGLEVAIMALDLPLENSLCLTKALAYLEAAFRLLSEDSVVSALHDLSPRLVLALFKMLVSTANMPTNVKRATADVLYNALFVDGRGGSTRVSLLFQEALSILLASEGMTHLRSLLGKDNAAVDWLRQSFSAVLREAPVGPPKRVLMDLVKCFAGLGRNEMTLEEVRESVERNQASASIFPDLAM 1195

The following BLAST results are available for this feature:

BLAST of EWM23654.1 vs. NCBI_GenBank

BLAST of EWM23654.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585104807\|gb\|EWM23654.1\|	0.000e+0	100.00	hypothetical protein Naga_100191g4 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7041	rna7041	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications