EWM29975.1, cds700 (CDS) Nannochloropsis gaditana

Overview
NameEWM29975.1
Unique Namecds700
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:199361..202939 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29975.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100383g4.7085.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:199361..202939 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: INTERPRO
TermDefinition
IPR008936Rho_GTPase_activation_prot
IPR000198RhoGAP_dom
Homology
BLAST of EWM29975.1 vs. NCBI_GenBank
Match: gi|585112578|gb|EWM29975.1| (hypothetical protein Naga_100383g4 [Nannochloropsis gaditana])

HSP 1 Score: 2425.2 bits (6284), Expect = 0.000e+0
Identity = 1192/1192 (100.00%), Postives = 1192/1192 (100.00%), Query Frame = 0
Query:    1 MIERLPQPEALKAEDWPPLTETTEAAAPSPIAAGTEIRHPKEAELLLSQGDRIEREENTQENFTNGKIMDQETSIGQAGHVKTRDDGIEIEDCSHDFACGCSEDGGNDEPHGKDNLNLSDGTVALYPHERFQYEVSPLEPGARLHHVAADIIFDRCLTYLRKDDGTMYTEGLFMLQPSMTRVRELQRRMSVGGGLEGASAWGAEGAEGEEEGRAGGRNQEETGKASPPVPSSPHEVAALLLQHLQVRPDPLIPSSLYAAWLGCQKVPGESARGGLGCSDGMARQDGVSVHILGREGDAAEASRESAAPSERRPLSPVSPNHALSDPHDEEAGGKWGDRWGDGGKENSWSAFYGADGVDKEVCEVEVAASCAARGAGEDPIPQPAGAPSGSTARGGGASLLRVKSVLCELTEKQWRQLGSLLDLMHALAKAPTGGSDLHAPTVSALGAILGPVLSRPPGSAYLSIRHTRDVPALASLGATVVEHAPELLACRGEGEQLGGGSEAHEAGQGASVVGAEDRAEREAEERGASPVRAARPWSSATASSPGHRDSRDGHERAPRALSPPCSPPVSILLSHGGPALFVSPLGDAQQSDGLPSSHGSSPLPQQNAREVEHRLLQQAEHLDRQRQQVEAARAVLTERLMPGLSKRLFSERTEDRLSQASGLVACFEEDSCPSQHNSICRTQSGRSAQLSSEQQLFGAERSNPPLPASSDTPAPPPPLTVPSVPCSPPLIPHPSSPDLKCLPHGPPVPLTPLSQQLDLDQETGKQALIVESSINGGEHEPRWREDTEGSNVSTQAQTRGWKAIEKNRAVKILQRLALTFVRRQRKRKHLTVKEQKAAPCEAARVIEVAPVLGVSEASLTVQALGPCCEARSSSPLAHPTSGVNQTCNAFTPEGDAWEAMRYWKPAIHTKTSNLEERKQVIPPLKHLLSKAASIPSSSEFQALLREKKRVKARLKKFNAAFLENHGRLPSMHDKEPMRRFYREYNLLKLQIAKALEKYQGNRQEESRGKGVGETSGRPRDGAQPETRVGESNEEASMTYWGIITPGKDSQRSGLPPPSPRRGGDLPIVYSPTRGQPSTSDNLIGGEMASMNRLCNLSQRSDSNLSEASDVQTLRREKKKLHVVLRKFESSFREQYGRRILTAKDIAPVEKQYERYIHIKSKLATLALMEKSEEISEQKETIKSRNILNTFHE 1192
            MIERLPQPEALKAEDWPPLTETTEAAAPSPIAAGTEIRHPKEAELLLSQGDRIEREENTQENFTNGKIMDQETSIGQAGHVKTRDDGIEIEDCSHDFACGCSEDGGNDEPHGKDNLNLSDGTVALYPHERFQYEVSPLEPGARLHHVAADIIFDRCLTYLRKDDGTMYTEGLFMLQPSMTRVRELQRRMSVGGGLEGASAWGAEGAEGEEEGRAGGRNQEETGKASPPVPSSPHEVAALLLQHLQVRPDPLIPSSLYAAWLGCQKVPGESARGGLGCSDGMARQDGVSVHILGREGDAAEASRESAAPSERRPLSPVSPNHALSDPHDEEAGGKWGDRWGDGGKENSWSAFYGADGVDKEVCEVEVAASCAARGAGEDPIPQPAGAPSGSTARGGGASLLRVKSVLCELTEKQWRQLGSLLDLMHALAKAPTGGSDLHAPTVSALGAILGPVLSRPPGSAYLSIRHTRDVPALASLGATVVEHAPELLACRGEGEQLGGGSEAHEAGQGASVVGAEDRAEREAEERGASPVRAARPWSSATASSPGHRDSRDGHERAPRALSPPCSPPVSILLSHGGPALFVSPLGDAQQSDGLPSSHGSSPLPQQNAREVEHRLLQQAEHLDRQRQQVEAARAVLTERLMPGLSKRLFSERTEDRLSQASGLVACFEEDSCPSQHNSICRTQSGRSAQLSSEQQLFGAERSNPPLPASSDTPAPPPPLTVPSVPCSPPLIPHPSSPDLKCLPHGPPVPLTPLSQQLDLDQETGKQALIVESSINGGEHEPRWREDTEGSNVSTQAQTRGWKAIEKNRAVKILQRLALTFVRRQRKRKHLTVKEQKAAPCEAARVIEVAPVLGVSEASLTVQALGPCCEARSSSPLAHPTSGVNQTCNAFTPEGDAWEAMRYWKPAIHTKTSNLEERKQVIPPLKHLLSKAASIPSSSEFQALLREKKRVKARLKKFNAAFLENHGRLPSMHDKEPMRRFYREYNLLKLQIAKALEKYQGNRQEESRGKGVGETSGRPRDGAQPETRVGESNEEASMTYWGIITPGKDSQRSGLPPPSPRRGGDLPIVYSPTRGQPSTSDNLIGGEMASMNRLCNLSQRSDSNLSEASDVQTLRREKKKLHVVLRKFESSFREQYGRRILTAKDIAPVEKQYERYIHIKSKLATLALMEKSEEISEQKETIKSRNILNTFHE
Sbjct:    1 MIERLPQPEALKAEDWPPLTETTEAAAPSPIAAGTEIRHPKEAELLLSQGDRIEREENTQENFTNGKIMDQETSIGQAGHVKTRDDGIEIEDCSHDFACGCSEDGGNDEPHGKDNLNLSDGTVALYPHERFQYEVSPLEPGARLHHVAADIIFDRCLTYLRKDDGTMYTEGLFMLQPSMTRVRELQRRMSVGGGLEGASAWGAEGAEGEEEGRAGGRNQEETGKASPPVPSSPHEVAALLLQHLQVRPDPLIPSSLYAAWLGCQKVPGESARGGLGCSDGMARQDGVSVHILGREGDAAEASRESAAPSERRPLSPVSPNHALSDPHDEEAGGKWGDRWGDGGKENSWSAFYGADGVDKEVCEVEVAASCAARGAGEDPIPQPAGAPSGSTARGGGASLLRVKSVLCELTEKQWRQLGSLLDLMHALAKAPTGGSDLHAPTVSALGAILGPVLSRPPGSAYLSIRHTRDVPALASLGATVVEHAPELLACRGEGEQLGGGSEAHEAGQGASVVGAEDRAEREAEERGASPVRAARPWSSATASSPGHRDSRDGHERAPRALSPPCSPPVSILLSHGGPALFVSPLGDAQQSDGLPSSHGSSPLPQQNAREVEHRLLQQAEHLDRQRQQVEAARAVLTERLMPGLSKRLFSERTEDRLSQASGLVACFEEDSCPSQHNSICRTQSGRSAQLSSEQQLFGAERSNPPLPASSDTPAPPPPLTVPSVPCSPPLIPHPSSPDLKCLPHGPPVPLTPLSQQLDLDQETGKQALIVESSINGGEHEPRWREDTEGSNVSTQAQTRGWKAIEKNRAVKILQRLALTFVRRQRKRKHLTVKEQKAAPCEAARVIEVAPVLGVSEASLTVQALGPCCEARSSSPLAHPTSGVNQTCNAFTPEGDAWEAMRYWKPAIHTKTSNLEERKQVIPPLKHLLSKAASIPSSSEFQALLREKKRVKARLKKFNAAFLENHGRLPSMHDKEPMRRFYREYNLLKLQIAKALEKYQGNRQEESRGKGVGETSGRPRDGAQPETRVGESNEEASMTYWGIITPGKDSQRSGLPPPSPRRGGDLPIVYSPTRGQPSTSDNLIGGEMASMNRLCNLSQRSDSNLSEASDVQTLRREKKKLHVVLRKFESSFREQYGRRILTAKDIAPVEKQYERYIHIKSKLATLALMEKSEEISEQKETIKSRNILNTFHE 1192          
BLAST of EWM29975.1 vs. NCBI_GenBank
Match: gi|585103553|gb|EWM22894.1| (hypothetical protein Naga_100320g4 [Nannochloropsis gaditana])

HSP 1 Score: 298.516 bits (763), Expect = 7.364e-91
Identity = 146/156 (93.59%), Postives = 148/156 (94.87%), Query Frame = 0
Query: 1037 MTYWGIITPGKDSQRSGLPPPSPRRGGDLPIVYSPTRGQPSTSDNLIGGEMASMNRLCNLSQRSDSNLSEASDVQTLRREKKKLHVVLRKFESSFREQYGRRILTAKDIAPVEKQYERYIHIKSKLATLALMEKSEEISEQKETIKSRNILNTFHE 1192
            MTYWGIITPGKDS+RSGLPPPSPRRG DLPIVYSP RGQPST DNLIGGEM SMNRLC+L QRSDSNLSEASDVQTLRREKK LHVVLRKFESSFREQYGRRILTAKDIAPVEKQYERYIHIKSKLATLA MEKSEEISEQKETIKSRNILNT HE
Sbjct:    1 MTYWGIITPGKDSKRSGLPPPSPRRGDDLPIVYSPKRGQPSTHDNLIGGEMTSMNRLCSLFQRSDSNLSEASDVQTLRREKKWLHVVLRKFESSFREQYGRRILTAKDIAPVEKQYERYIHIKSKLATLASMEKSEEISEQKETIKSRNILNTSHE 156          
BLAST of EWM29975.1 vs. NCBI_GenBank
Match: gi|585112691|gb|EWM30059.1| (hypothetical protein Naga_100170g1 [Nannochloropsis gaditana])

HSP 1 Score: 205.297 bits (521), Expect = 6.300e-58
Identity = 107/156 (68.59%), Postives = 110/156 (70.51%), Query Frame = 0
Query: 1037 MTYWGIITPGKDSQRSGLPPPSPRRGGDLPIVYSPTRGQPSTSDNLIGGEMASMNRLCNLSQRSDSNLSEASDVQTLRREKKKLHVVLRKFESSFREQYGRRILTAKDIAPVEKQYERYIHIKSKLATLALMEKSEEISEQKETIKSRNILNTFHE 1192
            MTYWGI+TPGKDS+RSGLP PSPRRG DLPIVYSPT+GQPST DNLIGGEM SMNRLCNLSQ                                      RRILT  DIAPVEKQYERYIHIKSKLATLA MEKSEEISEQKETIKSRNILNTF E
Sbjct:    1 MTYWGIVTPGKDSKRSGLPLPSPRRGDDLPIVYSPTQGQPSTHDNLIGGEMTSMNRLCNLSQ--------------------------------------RRILTVNDIAPVEKQYERYIHIKSKLATLASMEKSEEISEQKETIKSRNILNTFRE 118          
BLAST of EWM29975.1 vs. NCBI_GenBank
Match: gi|224008863|ref|XP_002293390.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970790|gb|EED89126.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.0333 bits (201), Expect = 5.588e-12
Identity = 65/227 (28.63%), Postives = 103/227 (45.37%), Query Frame = 0
Query:  943 LLREKKRVKARLKKFNAAFLENHGRLPSMHDKEPMRRFYREYNLLKLQIAKALEKYQGNRQEESRGKGVGETSGRPRDGAQPETRVGESNEEASMTYWGIITPGKDSQRSGLPPPSPRRGGDLPIVYSP----TRGQPSTSDNLIGGEMASMNRLCNLSQRSDSNLSEASDVQTLRREKKKLHVVLRKFESSFREQYGRRILTAKDIAPVEKQYERYIHIKSKLATL 1165
            L + K+ +K +LK ++  F   HGR+P   +KEP+R  Y  YN  K QI+ A+EK +          G G T+ R R          +S + A+       +P ++S       P+     D P   SP     +  P  +   I  E        + SQ  D+    + D+ +L+ EK  LH +LR +E  F +Q+ R++ +  DI PV  QY RY  IK  ++ +
Sbjct:  943 LQQRKRELKQQLKMYDLNFHAQHGRMPEKREKEPIRHLYESYNAYKNQIS-AIEKGEAE-------PGPGTTAFRGR---------SDSADAANTISSADSSPDRNS-------PT-----DNPSNVSPGQVNMKSSPKNASEFIDDEE-------DTSQNDDNVRGVSQDLSSLKAEKATLHQMLRSYEKDFFKQHKRQVSSFSDIRPVASQYRRYKEIKKAISAM 1133          
BLAST of EWM29975.1 vs. NCBI_GenBank
Match: gi|873231941|emb|CEM06834.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 76.6406 bits (187), Expect = 7.237e-11
Identity = 74/233 (31.76%), Postives = 103/233 (44.21%), Query Frame = 0
Query:  943 LLREKKRVKARLKKFNAAFLENHGRLPSMHDKEPMRRFYREYNLLKLQIAKALEKYQGN--RQEESRGKGVGETSGRPRDGAQPETRV-GESNEEASMTYWGIITPGKDSQRSGLPPPSPRRGGDLPIVYSPTRGQ----PSTSDNLIGGEMASMNRLCNLSQRSDSNLSEASDVQTLRREKKKLHVVLRKFESSFREQYGRRILTAKDIAPVEKQYERYIHIKSKLATLALM 1168
            L REKK+VK+ LKK++ AF   +GRLP+  +KEPMR  Y  Y  LK  I       QG    Q  SR +    +S + + GA+  + V G S    S          +D   SG   P  R          P R Q    P+ S N   GE           QR D           L REK +L  VL+K+++ F  +  R+I   KDI P+E++Y+ Y   K ++  L  +
Sbjct:  188 LEREKKQVKSELKKYDTAFESAYGRLPNRKEKEPMRPLYCYYRKLKAMIGNVSTSRQGYALSQRSSRDRRATPSSQQQQGGAKSGSAVSGRSEVPLSEVPSSRGDSAQDLGESGARAPRHR---------EPARQQGVDVPAASSNNDEGE--------RYRQRLDQ----------LYREKTRLRHVLQKYQTKFMAENSRKIRFHKDILPIEREYKCYKQCKQEIQRLTSL 393          
BLAST of EWM29975.1 vs. NCBI_GenBank
Match: gi|678316873|emb|CDW86088.1| (UNKNOWN [Stylonychia lemnae])

HSP 1 Score: 74.7146 bits (182), Expect = 2.559e-10
Identity = 64/232 (27.59%), Postives = 99/232 (42.67%), Query Frame = 0
Query:  946 EKKRVKARLKKFNAAFLENHGRLPSMHDKEPMRRFYREYNLLKLQIAKALEKYQGNRQEESRGKGVGETSGRPRDG---------------AQPETRVGESNEEASMTYWGIITPGKDSQRSGLPPPSPRRGGDLPIVYSPTRGQPSTSDNLIGGEMASMNRLCNLSQRSDSNLSEASDVQTLRREKKKLHVVLRKFESSFREQYGRRILTAKDIAPVEKQYERYIHIKSKL 1162
            EKK+VK  LK+++ +FL    RLP+  +KEPMR  Y  Y  LK  I K           + R + +G     PR+G               +QP+TR       +S+   G ++ G  S      P   +   D  +    +    +T  +  GG  +    L           +E   V+ L+ E+K L   L KF+  F   + R+I   KDIAPV  +++RY  +K +L
Sbjct:  122 EKKKVKNELKQYDQSFLNKFNRLPNRPEKEPMRNIYMYYKRLKQAITKTQAIGG--AGGQGRSQSMGAARQNPRNGYIQMGSQPQPQHQSMSQPQTRA------SSIASSGQLSSGYLSDNVA-NPEEQKYEEDKLVNAQVSSLVTNTQSSTTGGSQSDSQYLMKKYNLRSIFDAERKAVE-LKNERKGLRTKLDKFQKDFETNHKRKIAYTKDIAPVASEFKRYRELKIEL 343          
The following BLAST results are available for this feature:
BLAST of EWM29975.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585112578|gb|EWM29975.1|0.000e+0100.00hypothetical protein Naga_100383g4 [Nannochloropsi... [more]
gi|585103553|gb|EWM22894.1|7.364e-9193.59hypothetical protein Naga_100320g4 [Nannochloropsi... [more]
gi|585112691|gb|EWM30059.1|6.300e-5868.59hypothetical protein Naga_100170g1 [Nannochloropsi... [more]
gi|224008863|ref|XP_002293390.1|5.588e-1228.63predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|873231941|emb|CEM06834.1|7.237e-1131.76unnamed protein product [Vitrella brassicaformis C... [more]
gi|678316873|emb|CDW86088.1|2.559e-1027.59UNKNOWN [Stylonychia lemnae][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna700rna700Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications