EWM23700.1, cds6999 (CDS) Nannochloropsis gaditana

Overview
NameEWM23700.1
Unique Namecds6999
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:249362..249723 -
Alignment locationCM002470.1:248844..249203 -
Alignment locationCM002470.1:248372..248749 -
Alignment locationCM002470.1:247517..248252 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23700.1
Productcysteinyl-trna synthetase
Orig transcript idgnl|cribi|Naga_100030g38.4197.mrna
GeneCYSRS
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:249362..249723 -
CM002470.1supercontigCM002470.1:248844..249203 -
CM002470.1supercontigCM002470.1:248372..248749 -
CM002470.1supercontigCM002470.1:247517..248252 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006418tRNA aminoacylation for protein translation
GO:0006423cysteinyl-tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0004817cysteine-tRNA ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR009080tRNAsynth_1a_anticodon-bd
IPR015803Cys-tRNA-ligase
IPR014729Rossmann-like_a/b/a_fold
IPR024909Cys-tRNA/MSH_ligase
Homology
BLAST of EWM23700.1 vs. NCBI_GenBank
Match: gi|585104854|gb|EWM23700.1| (cysteinyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 1250.73 bits (3235), Expect = 0.000e+0
Identity = 611/611 (100.00%), Postives = 611/611 (100.00%), Query Frame = 0
Query:    1 MSFPGRPRGALETLARSTYFVNLPRLTLSAVLTRNRRHFGASSSPLIPLLKKSAERPSLEALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNKPGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAFRMSEDPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLAGHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDGCKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGLRCFNQFTLLHRGSLSGADVESLAKSLVDFRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSWTLASPSSAPCEAADQKLDVPGVTLLASRRPK 611
            MSFPGRPRGALETLARSTYFVNLPRLTLSAVLTRNRRHFGASSSPLIPLLKKSAERPSLEALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNKPGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAFRMSEDPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLAGHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDGCKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGLRCFNQFTLLHRGSLSGADVESLAKSLVDFRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSWTLASPSSAPCEAADQKLDVPGVTLLASRRPK
Sbjct:    1 MSFPGRPRGALETLARSTYFVNLPRLTLSAVLTRNRRHFGASSSPLIPLLKKSAERPSLEALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNKPGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAFRMSEDPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLAGHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDGCKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGLRCFNQFTLLHRGSLSGADVESLAKSLVDFRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSWTLASPSSAPCEAADQKLDVPGVTLLASRRPK 611          
BLAST of EWM23700.1 vs. NCBI_GenBank
Match: gi|669155348|ref|XP_008613236.1| (cysteinyl-tRNA synthetase [Saprolegnia diclina VS20] >gi|530734871|gb|EQC33113.1| cysteinyl-tRNA synthetase [Saprolegnia diclina VS20])

HSP 1 Score: 399.053 bits (1024), Expect = 5.644e-128
Identity = 242/587 (41.23%), Postives = 320/587 (54.51%), Query Frame = 0
Query:   33 TRNRRHFGASSSPLIPLLKKSAERPSLEA-----LKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNKPGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAF-RMSEDPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLA--GHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDGC--KRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGLR----CFNQFTLLHRGSLSG-----ADVESLAKSLVDFRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSW---TLASPSSAPCEAADQKL 597
            T  RR    +  P+  L   S +   L       LKWY CGPTVYDSAHLGHAR+YVSQD++RRVLT +   D+  VMG+TDVDDKI+  ++   +   A+AR +EA FLAD+ +LNVL  SA+ RV+EHI +I+ YIK ++ NG AY TS GVYFD  A   K  YGKL            AP    E        D     EK+++RDF LWK +K  +    WDS +GRGRPGWHIECSAMT H+LG  +D+HSGG+DLCFPHH NE+AQ D +   +    W   ++H GHLYIKGLKMSKSLKNFIS+++FL+  G  +D FR+FCLQ +++ +V +SE  + +A  L Q F +F     Q +  L++     +R       ++  LA  KV V +A ++   DTP VL  L  L+ L H  ++  D             EVV  +AAYV + L L GL      F+   L    + +      A  ES+      FRARVR AAL      P+D              +Q +L LCD  R   L  LGIQ+ D   G   W   T+    +AP +    +L
Sbjct:   11 TTGRRLLSTAPRPISALNSLSGKVEPLPVASSGPLKWYVCGPTVYDSAHLGHARSYVSQDILRRVLTGYFRHDINLVMGMTDVDDKIIATSLREGKPMEAVARHHEAAFLADLASLNVLRASAITRVSEHIPEILAYIKTLEANGFAYTTSDGVYFDTVALGAK--YGKL------------APNAATEISDVAASDDSGIGSEKRNVRDFALWKRSKTADEP-GWDSRYGRGRPGWHIECSAMTHHVLGGAIDVHSGGIDLCFPHHNNEVAQCDGYHHTTAGHTWCKHFIHFGHLYIKGLKMSKSLKNFISIQDFLSAPGSSSDAFRLFCLQYKYNTNVHFSEDRMRDANVLLQRFTSFF----QSIVGLTKASTLHRRLETPNDVLLTALAEAKVEVDRA-LRNDFDTPAVLLQLTQLISLVHREVQSRDISI----------EVVCRVAAYVLETLHLFGLNKSLAGFSSIALAAPVATTDAGAGLAHAESILDEFTAFRARVRQAALTN----PKDPQ------------SQTILALCDRLRNETLPPLGIQIDDVAPGTSHWKAQTMIEADAAPVDPVKVQL 551          
BLAST of EWM23700.1 vs. NCBI_GenBank
Match: gi|698779185|ref|XP_009822636.1| (cysteine-tRNA ligase, variant 3 [Aphanomyces astaci] >gi|574122298|gb|ETV87774.1| cysteine-tRNA ligase, variant 3 [Aphanomyces astaci])

HSP 1 Score: 397.127 bits (1019), Expect = 1.704e-127
Identity = 246/597 (41.21%), Postives = 324/597 (54.27%), Query Frame = 0
Query:    1 MSFPGRPRGALETLARSTYFVNLPRLTLSAVLTRNRRHFGASSSPLIPLLKKSAERPSLEALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNK-PGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAFRMSE-DPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLAGHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDG----CKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGLRCFNQFTL-----------LHRGSLSGADVESLAKSLVDFRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSW 580
            ++F GRP   L T       V+ P L     LT     F +SSSPL                KWY CGPTVYDSAHLGHAR+YVSQD++RR++T    QD+  VMG+TDVDDKI+  A  ++     +AR +E  FL ++ ALNVL  S++ RV+EHI +II YI+ +D+NG AY TS GVYFD  A     +YGKL            AP   +E     +    VG  EK+++RDF LWK +K P E    W+SPWGRGRPGWHIECSAMT H+LG  +D+HSGGVDL FPHH NEIAQ DA+   + D  W   ++H GHLYIKGLKMSKSLKNFI++   LA + AD FR+FCLQ +++ +V +S   + +A ++   F +F    Q  V      G     +R  A +F ++  LA+ K+ V  A ++   DTP  L+ L +LV            KA   D      EV+  +A YV   LAL GL      +L               ++ GADV  +      FRA+VRA AL                  T+  +AQ +L LCD  R+  L  LGIQ++D   G+  W
Sbjct:    8 LTFHGRPMRRLST------GVSKPPLVAMNSLTGRLDTFPSSSSPL----------------KWYVCGPTVYDSAHLGHARSYVSQDILRRIVTQHFHQDIFLVMGMTDVDDKIIAAASAQQTSMANVARHHETAFLRNLAALNVLRVSSITRVSEHIPEIIGYIQGLDSNGFAYATSDGVYFDTVAMGS--SYGKL------------APSTPQEYTDIVLEDGAVG-GEKRNVRDFALWKLSKTPDEPG--WESPWGRGRPGWHIECSAMTHHVLGGSIDVHSGGVDLRFPHHNNEIAQCDAYHHHQADHTWCQHFVHFGHLYIKGLKMSKSLKNFITIDALLANYSADAFRLFCLQYKYNVNVHFSHDRMRDANAVYHRFHSFFHTLQSHVKATEAGGASEHARRVDAADFRVLDALAQCKLEVDSA-LRLDFDTPGALQHLLELV--------TATNKAWT-DRPAMSVEVLCAVATYVMDTLALFGLDALRFPSLRLAAPVADDAASQSNAIQGADVMDV---FTTFRAQVRALAL----------------TNTSDKVAQDILKLCDTVRDAQLPSLGIQIEDISPGKSFW 536          
BLAST of EWM23700.1 vs. NCBI_GenBank
Match: gi|698779183|ref|XP_009822635.1| (cysteine-tRNA ligase, variant 1 [Aphanomyces astaci] >gi|574122296|gb|ETV87772.1| cysteine-tRNA ligase, variant 1 [Aphanomyces astaci])

HSP 1 Score: 397.127 bits (1019), Expect = 3.308e-127
Identity = 246/597 (41.21%), Postives = 324/597 (54.27%), Query Frame = 0
Query:    1 MSFPGRPRGALETLARSTYFVNLPRLTLSAVLTRNRRHFGASSSPLIPLLKKSAERPSLEALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNK-PGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAFRMSE-DPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLAGHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDG----CKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGLRCFNQFTL-----------LHRGSLSGADVESLAKSLVDFRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSW 580
            ++F GRP   L T       V+ P L     LT     F +SSSPL                KWY CGPTVYDSAHLGHAR+YVSQD++RR++T    QD+  VMG+TDVDDKI+  A  ++     +AR +E  FL ++ ALNVL  S++ RV+EHI +II YI+ +D+NG AY TS GVYFD  A     +YGKL            AP   +E     +    VG  EK+++RDF LWK +K P E    W+SPWGRGRPGWHIECSAMT H+LG  +D+HSGGVDL FPHH NEIAQ DA+   + D  W   ++H GHLYIKGLKMSKSLKNFI++   LA + AD FR+FCLQ +++ +V +S   + +A ++   F +F    Q  V      G     +R  A +F ++  LA+ K+ V  A ++   DTP  L+ L +LV            KA   D      EV+  +A YV   LAL GL      +L               ++ GADV  +      FRA+VRA AL                  T+  +AQ +L LCD  R+  L  LGIQ++D   G+  W
Sbjct:    8 LTFHGRPMRRLST------GVSKPPLVAMNSLTGRLDTFPSSSSPL----------------KWYVCGPTVYDSAHLGHARSYVSQDILRRIVTQHFHQDIFLVMGMTDVDDKIIAAASAQQTSMANVARHHETAFLRNLAALNVLRVSSITRVSEHIPEIIGYIQGLDSNGFAYATSDGVYFDTVAMGS--SYGKL------------APSTPQEYTDIVLEDGAVG-GEKRNVRDFALWKLSKTPDEPG--WESPWGRGRPGWHIECSAMTHHVLGGSIDVHSGGVDLRFPHHNNEIAQCDAYHHHQADHTWCQHFVHFGHLYIKGLKMSKSLKNFITIDALLANYSADAFRLFCLQYKYNVNVHFSHDRMRDANAVYHRFHSFFHTLQSHVKATEAGGASEHARRVDAADFRVLDALAQCKLEVDSA-LRLDFDTPGALQHLLELV--------TATNKAWT-DRPAMSVEVLCAVATYVMDTLALFGLDALRFPSLRLAAPVADDAASQSNAIQGADVMDV---FTTFRAQVRALAL----------------TNTSDKVAQDILKLCDTVRDAQLPSLGIQIEDISPGKSFW 536          
BLAST of EWM23700.1 vs. NCBI_GenBank
Match: gi|1173938767|gb|OQR88857.1| (cysteinyl-tRNA synthetase [Achlya hypogyna])

HSP 1 Score: 395.201 bits (1014), Expect = 2.446e-126
Identity = 241/563 (42.81%), Postives = 322/563 (57.19%), Query Frame = 0
Query:   37 RHFGASSSPLIPLLKKSAERPSL----EALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGM-DEKKDLRDFVLWKFNKPGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAF-RMSEDPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLA--GHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDG--CKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGL-RCFNQFTLLHRGSLSGADVESL----AKSLVD----FRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSW 580
            RH   S++ +  L   S +   L      LKWY CGPTVYDSAHLGHAR+YVSQD++RRVLT +  QD+  VMG+TDVDDKI+  A+       A+AR++EA FL+D+ ALNVL  SA+ RV+EHI +I+ YI  ++ NG AY T+ GVYFD  A      YGKL            AP    E     I VD  G+  EK++ RDF LWK +K  +    WDS +GRGRPGWHIECSAMT H+LG  +D+HSGG+DLCFPHH NE+AQ D +   +    W   ++H GHLYIKGLKMSKSLKNFIS+R+FL+  G  +D FR+FCLQ +++ +V +S   + +A  L Q F++F     Q V  LS+    C+R    +  ++  LAR K  V +A ++   DTP VL  L  L+ L H  L+   G            +VV  +AAYV ++  L GL +    F+ +   + + A  E+     A +++D    FRARVR  AL    R P+D               Q +L LCD  R+  L  LGIQ++D   G   W
Sbjct:   17 RHLSTSTASVHALNSLSGKMDPLPLGSRPLKWYVCGPTVYDSAHLGHARSYVSQDILRRVLTTYFRQDINLVMGMTDVDDKIIATALREGRSMEAVARQHEAAFLSDLAALNVLRASAITRVSEHIPEILAYITTLERNGFAYRTTDGVYFDTVALGDD--YGKL------------APNAATEATD--IVVDDNGIGSEKRNSRDFALWKRSKTTDEP-GWDSDFGRGRPGWHIECSAMTHHVLGGAIDVHSGGIDLCFPHHNNEVAQCDGYHHHTPGHTWCKHFVHFGHLYIKGLKMSKSLKNFISIRDFLSEPGASSDAFRVFCLQYKYNTNVHFSLDRMRDANVLLQRFVSFF----QTVLALSKSPELCRRLETPDDPLLLGLARAKTAVDRA-MRDDFDTPSVLVELTALMSLVHRELQARPGAVSV--------DVVCRVAAYVLEMCQLFGLQQSIAGFSSVALAAPTSAAHEASGLEHANAILDEFSAFRARVRQVAL----RNPKDPQ------------CQDILKLCDILRDSTLPPLGIQIEDVAPGTAHW 533          
BLAST of EWM23700.1 vs. NCBI_GenBank
Match: gi|698779187|ref|XP_009822637.1| (cysteine-tRNA ligase, variant 2 [Aphanomyces astaci] >gi|574122297|gb|ETV87773.1| cysteine-tRNA ligase, variant 2 [Aphanomyces astaci])

HSP 1 Score: 390.578 bits (1002), Expect = 8.275e-125
Identity = 246/613 (40.13%), Postives = 324/613 (52.85%), Query Frame = 0
Query:    1 MSFPGRPRGALETLARSTYFVNLPRLTLSAVLTRNRRHFGASSSPLIPLLKKSAERPSLEALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNK-PGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAFRMSE-----------------DPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLAGHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDG----CKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGLRCFNQFTL-----------LHRGSLSGADVESLAKSLVDFRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSW 580
            ++F GRP   L T       V+ P L     LT     F +SSSPL                KWY CGPTVYDSAHLGHAR+YVSQD++RR++T    QD+  VMG+TDVDDKI+  A  ++     +AR +E  FL ++ ALNVL  S++ RV+EHI +II YI+ +D+NG AY TS GVYFD  A     +YGKL            AP   +E     +    VG  EK+++RDF LWK +K P E    W+SPWGRGRPGWHIECSAMT H+LG  +D+HSGGVDL FPHH NEIAQ DA+   +                 D  W   ++H GHLYIKGLKMSKSLKNFI++   LA + AD FR+FCLQ +++ +V +S   + +A ++   F +F    Q  V      G     +R  A +F ++  LA+ K+ V  A ++   DTP  L+ L +LV            KA   D      EV+  +A YV   LAL GL      +L               ++ GADV  +      FRA+VRA AL                  T+  +AQ +L LCD  R+  L  LGIQ++D   G+  W
Sbjct:    8 LTFHGRPMRRLST------GVSKPPLVAMNSLTGRLDTFPSSSSPL----------------KWYVCGPTVYDSAHLGHARSYVSQDILRRIVTQHFHQDIFLVMGMTDVDDKIIAAASAQQTSMANVARHHETAFLRNLAALNVLRVSSITRVSEHIPEIIGYIQGLDSNGFAYATSDGVYFDTVAMGS--SYGKL------------APSTPQEYTDIVLEDGAVG-GEKRNVRDFALWKLSKTPDEPG--WESPWGRGRPGWHIECSAMTHHVLGGSIDVHSGGVDLRFPHHNNEIAQCDAYHHHQAGRYLMVGSCVCFYSGVDHTWCQHFVHFGHLYIKGLKMSKSLKNFITIDALLANYSADAFRLFCLQYKYNVNVHFSHDRMRDANAVYHRFHSFFHTLQSHVKATEAGGASEHARRVDAADFRVLDALAQCKLEVDSA-LRLDFDTPGALQHLLELV--------TATNKAWT-DRPAMSVEVLCAVATYVMDTLALFGLDALRFPSLRLAAPVADDAASQSNAIQGADVMDV---FTTFRAQVRALAL----------------TNTSDKVAQDILKLCDTVRDAQLPSLGIQIEDISPGKSFW 552          
BLAST of EWM23700.1 vs. NCBI_GenBank
Match: gi|698779181|ref|XP_009822634.1| (cysteine-tRNA ligase [Aphanomyces astaci] >gi|574122295|gb|ETV87771.1| cysteine-tRNA ligase [Aphanomyces astaci])

HSP 1 Score: 390.578 bits (1002), Expect = 1.667e-124
Identity = 246/613 (40.13%), Postives = 324/613 (52.85%), Query Frame = 0
Query:    1 MSFPGRPRGALETLARSTYFVNLPRLTLSAVLTRNRRHFGASSSPLIPLLKKSAERPSLEALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNK-PGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAFRMSE-----------------DPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLAGHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDG----CKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGLRCFNQFTL-----------LHRGSLSGADVESLAKSLVDFRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSW 580
            ++F GRP   L T       V+ P L     LT     F +SSSPL                KWY CGPTVYDSAHLGHAR+YVSQD++RR++T    QD+  VMG+TDVDDKI+  A  ++     +AR +E  FL ++ ALNVL  S++ RV+EHI +II YI+ +D+NG AY TS GVYFD  A     +YGKL            AP   +E     +    VG  EK+++RDF LWK +K P E    W+SPWGRGRPGWHIECSAMT H+LG  +D+HSGGVDL FPHH NEIAQ DA+   +                 D  W   ++H GHLYIKGLKMSKSLKNFI++   LA + AD FR+FCLQ +++ +V +S   + +A ++   F +F    Q  V      G     +R  A +F ++  LA+ K+ V  A ++   DTP  L+ L +LV            KA   D      EV+  +A YV   LAL GL      +L               ++ GADV  +      FRA+VRA AL                  T+  +AQ +L LCD  R+  L  LGIQ++D   G+  W
Sbjct:    8 LTFHGRPMRRLST------GVSKPPLVAMNSLTGRLDTFPSSSSPL----------------KWYVCGPTVYDSAHLGHARSYVSQDILRRIVTQHFHQDIFLVMGMTDVDDKIIAAASAQQTSMANVARHHETAFLRNLAALNVLRVSSITRVSEHIPEIIGYIQGLDSNGFAYATSDGVYFDTVAMGS--SYGKL------------APSTPQEYTDIVLEDGAVG-GEKRNVRDFALWKLSKTPDEPG--WESPWGRGRPGWHIECSAMTHHVLGGSIDVHSGGVDLRFPHHNNEIAQCDAYHHHQAGRYLMVGSCVCFYSGVDHTWCQHFVHFGHLYIKGLKMSKSLKNFITIDALLANYSADAFRLFCLQYKYNVNVHFSHDRMRDANAVYHRFHSFFHTLQSHVKATEAGGASEHARRVDAADFRVLDALAQCKLEVDSA-LRLDFDTPGALQHLLELV--------TATNKAWT-DRPAMSVEVLCAVATYVMDTLALFGLDALRFPSLRLAAPVADDAASQSNAIQGADVMDV---FTTFRAQVRALAL----------------TNTSDKVAQDILKLCDTVRDAQLPSLGIQIEDISPGKSFW 552          
BLAST of EWM23700.1 vs. NCBI_GenBank
Match: gi|673015380|ref|XP_008861651.1| (cysteine-tRNA ligase [Aphanomyces invadans] >gi|574483249|gb|ETW10240.1| cysteine-tRNA ligase [Aphanomyces invadans])

HSP 1 Score: 388.652 bits (997), Expect = 6.685e-124
Identity = 236/567 (41.62%), Postives = 313/567 (55.20%), Query Frame = 0
Query:   24 PRLTLSAVLTRNRRHFGASSSPLIPLLKKSAERPSLEALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNKPGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAFRMSE-DPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLAGHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDG-CKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGLRCFNQFTLLHRGSLSGADVESL----AKSLVD----FRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSW 580
            P+L     LT     F  SSSPL                KWY CGPTVYDSAHLGHAR+YVSQD++RRVLT    Q++  VMG+TDVDDKI+  A  ++     +AR  EA FL ++  LNVL  S++ RV+EHI +II YI+ +  NG AY TS GVYFD  A   K  YGKL         N    V  E+G         VG  EK+++RDF LWK +K  E    W+SPWGRGRPGWHIECSAMT H+LG  +D+HSGGVDL FPHH NEIAQ DA+     D  W   ++H GHLYIKGLKMSKSLKNFI++   L  + AD FR+FCLQ +++ +V +SE  + +A ++ Q F++F+   Q  V   +     +R    +  ++A LA+ K  V  A ++   DTP+ L+ L DL+   ++           +D      EV+  +A Y+   L L GL    +F  L   +    D  SL    A  ++D    FRA VRA AL                  T+  +A+ +L LCD  R+ +L  LGIQ++D   G+  W
Sbjct:   26 PQLVAFNSLTGQLDAFPTSSSPL----------------KWYVCGPTVYDSAHLGHARSYVSQDILRRVLTQHFHQEIFLVMGMTDVDDKIIAAAASQQTTMTNIARTNEAAFLRNLADLNVLRVSSITRVSEHIPEIIAYIQGLGANGFAYVTSDGVYFDTVAMGAK--YGKLAPNTPQEYDN----VVPEDG--------AVG-GEKRNVRDFALWKLSKSPEEP-GWESPWGRGRPGWHIECSAMTHHVLGDAIDVHSGGVDLRFPHHNNEIAQCDAYHHHACDHTWCKHFVHFGHLYIKGLKMSKSLKNFITIDSLLETYSADTFRVFCLQYKYNMNVHFSEDRMRDASAIYQRFLSFLQTLQSHVKAAAHSPLSRRVDGVDHTVLAALAQCKQDVDIA-MRHDFDTPRALQHLLDLISHTNKTW---------KDHPSMSVEVLCTVATYIVDTLTLFGLATL-RFPSLRLAAPVADDATSLNSIQANDVMDAFTTFRANVRALAL----------------TNTSDKVARDILNLCDNVRDVELPALGIQLEDVAPGKSFW 533          
BLAST of EWM23700.1 vs. NCBI_GenBank
Match: gi|813149176|ref|XP_012200235.1| (cysteinyl-tRNA synthetase [Saprolegnia parasitica CBS 223.65] >gi|641535141|gb|KDO29065.1| cysteinyl-tRNA synthetase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 387.882 bits (995), Expect = 9.212e-124
Identity = 235/567 (41.45%), Postives = 310/567 (54.67%), Query Frame = 0
Query:   33 TRNRRHFGASSSPLIPLLKKSAERPSLEA-----LKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNKPGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAFRM-SEDPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLA--GHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLSRDGC--KRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLG----LRCFNQFTLLHRGSLSG-----ADVESLAKSLVDFRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSW 580
            T  RR   ++S P+  L   S +  +L       LKWY CGPTVYDSAHLGHAR+YVSQD++RRVLT +   D+  VMG+TDVDDKI+  ++   +   A+AR +EA FLAD+ +LNVL  SA+ RV+EHI +I+ YI+ ++ NG AY TS GVYFD        A G         S                IG       EK+++RDF LWK +K  +    WDS +GRGRPGWHIECSAMT H+LG  +D+HSGG+DLCFPHH NE+AQ D +   S    W   ++H GHLYIKGLKMSKSLKNFIS+++FL+  G  +D FR+FCLQ +++ +V +SE  + +A  L Q F +F     Q V  L++     +R    +  ++  LA  KV V +A ++   DTP VL  L  L+ L H           E    +   EVV  LAAYV + L L G    L  F+   L    + S      A  E++      FRARVR  AL      P+D              +Q +L LCD+ R   L  LGIQ+ D   G   W
Sbjct:   11 TTGRRLLSSASRPITALNSLSGKVEALPVASSGPLKWYVCGPTVYDSAHLGHARSYVSQDILRRVLTGYFRHDINLVMGMTDVDDKIIATSLREGKPMEAVARHHEAAFLADLASLNVLRASAITRVSEHIPEILAYIETLEANGFAYTTSDGVYFDT------VALGADDAAAADDSG---------------IG------SEKRNVRDFALWKRSKTADEP-GWDSRYGRGRPGWHIECSAMTHHVLGGSIDVHSGGIDLCFPHHNNEVAQCDGYHHNSAGHTWCKHFIHFGHLYIKGLKMSKSLKNFISIQDFLSAPGSSSDAFRLFCLQYKYNTNVHFSEDRMRDANVLLQRFTSFF----QAVVGLTKASTPHRRLETPDDVLLTALAEAKVEVDRA-LRNDFDTPAVLMQLTQLISLVH----------REVQARKISIEVVCRLAAYVLETLHLFGLDKSLTGFSSIALAAPVAASDAGAGLAHAENILDEFTAFRARVRQVALAN----PKDPQ------------SQAILALCDQLRNETLPPLGIQIDDVAPGTSHW 518          
BLAST of EWM23700.1 vs. NCBI_GenBank
Match: gi|567955605|gb|ETK81238.1| (cysteine-tRNA ligase [Phytophthora parasitica] >gi|567984297|gb|ETL34669.1| cysteine-tRNA ligase [Phytophthora parasitica] >gi|568043907|gb|ETM41165.1| cysteine-tRNA ligase [Phytophthora parasitica] >gi|570945690|gb|ETP10947.1| cysteine-tRNA ligase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 386.726 bits (992), Expect = 1.700e-122
Identity = 251/603 (41.63%), Postives = 330/603 (54.73%), Query Frame = 0
Query:   34 RNRRHFGASSSPLIPLLKKSAERPSLEALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYET--SSGVYFDVRAFSKKFAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMD-------EKKDLRDFVLWKFNK-PGEAAMSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAF---RMSEDPAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLA-GHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFV-SLAQQRVHVLSRDG------CKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLGLRCFN---------QFTLLHRGS----------LSGADVESLAKSLVDFRARVRAAALEGRRRRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSWTLASPSSAPCEAADQK 596
            R+ + F A +    P  ++++  P++  LKWYACGPTVYDSAHLGHAR YVSQD++RRV     G +V  VMG+TDVDDKI++RA E+      LAR  E  F ADM  L V  P+A+ RV+EH+ +II YIK+I   G AYE    SGVYF+ +    K  YGKL  +             R+  Q E++   V   D        KKD RDF LWK  K P E A  W SPWG GRPGWHIECSAMT H+LG  LD+H+GGVDL FPHH NEIAQ +A    + + D  W   ++H GHLYI+G KMSKSLKNFISVR+FL  GH AD FR+FCLQ ++ A++ YSE  + +A ++      F  S+     H +S  G       KR    + E++  L   +  V  A +   LDTP+ L L+ +LV  G+ YL    G       TEA  EV+ +L  YV  +L L GL   +         +FT  H  +          +S  D E+L +SL+ FRA VR  AL    R P+   +             R+L LCD+ R ++L +LGIQ++D   G   + L S +    E  D K
Sbjct:   38 RDLKMFNALTGQCEPFPRETSATPNV--LKWYACGPTVYDSAHLGHARAYVSQDILRRVAERTGGYNVQLVMGVTDVDDKIIKRAKEKNVSFETLAREQEQQFFADMTKLYVKPPTAITRVSEHLPEIIKYIKEIQNKGFAYEAVDGSGVYFNTQQLGDK--YGKLDPR-------------RQTQQDEQLLAAVEQSDVVEEEEKVKKDPRDFALWKAAKEPDEPA--WPSPWGMGRPGWHIECSAMTHHVLGDKLDVHTGGVDLRFPHHNNEIAQCEAHNHQQCNHDEEWCKHFVHFGHLYIRGRKMSKSLKNFISVRDFLQDGHTADHFRLFCLQFKYRANLVYSEDRVRDAEAVADRLRGFFRSVTAYGDHEISSSGHTQHIKSKRCEQLDLELLDALFATRAQVDAALLD-DLDTPRALSLVLELVSRGNTYLLASRG------DTEAPDEVLMSLTDYVLDVLDLFGLEGLHAEFSTMMRRRFTSRHSETQHKVEESDELVSRDDHEALLRSLLKFRASVREEAL----RDPKQPGNA------------RVLSLCDDLRNKELPQLGIQIEDLSPGRSVFKLLSRTERKAETEDTK 598          
The following BLAST results are available for this feature:
BLAST of EWM23700.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104854|gb|EWM23700.1|0.000e+0100.00cysteinyl-trna synthetase [Nannochloropsis gaditan... [more]
gi|669155348|ref|XP_008613236.1|5.644e-12841.23cysteinyl-tRNA synthetase [Saprolegnia diclina VS2... [more]
gi|698779185|ref|XP_009822636.1|1.704e-12741.21cysteine-tRNA ligase, variant 3 [Aphanomyces astac... [more]
gi|698779183|ref|XP_009822635.1|3.308e-12741.21cysteine-tRNA ligase, variant 1 [Aphanomyces astac... [more]
gi|1173938767|gb|OQR88857.1|2.446e-12642.81cysteinyl-tRNA synthetase [Achlya hypogyna][more]
gi|698779187|ref|XP_009822637.1|8.275e-12540.13cysteine-tRNA ligase, variant 2 [Aphanomyces astac... [more]
gi|698779181|ref|XP_009822634.1|1.667e-12440.13cysteine-tRNA ligase [Aphanomyces astaci] >gi|5741... [more]
gi|673015380|ref|XP_008861651.1|6.685e-12441.62cysteine-tRNA ligase [Aphanomyces invadans] >gi|57... [more]
gi|813149176|ref|XP_012200235.1|9.212e-12441.45cysteinyl-tRNA synthetase [Saprolegnia parasitica ... [more]
gi|567955605|gb|ETK81238.1|1.700e-12241.63cysteine-tRNA ligase [Phytophthora parasitica] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7016rna7016Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications