EWM23663.1, cds6995 (CDS) Nannochloropsis gaditana

Overview
NameEWM23663.1
Unique Namecds6995
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:234423..235229 +
Alignment locationCM002470.1:235335..237307 +
Alignment locationCM002470.1:237489..238227 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23663.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100030g33.4160.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:234423..235229 +
CM002470.1supercontigCM002470.1:235335..237307 +
CM002470.1supercontigCM002470.1:237489..238227 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Homology
[Close]
BLAST of EWM23663.1 vs. NCBI_GenBank
Match: gi|585104817|gb|EWM23663.1| (hypothetical protein Naga_100030g33 [Nannochloropsis gaditana])

HSP 1 Score: 2357.79 bits (6109), Expect = 0.000e+0
Identity = 1172/1172 (100.00%), Postives = 1172/1172 (100.00%), Query Frame = 0 
Query:    1 MSFLPAKRRRGGKQAVQVRSLRNYLLVDNADQGQVGLLPESVACNLSGCDASSILAGVDDRTARAYILAGNRLFTWRLEPAELDKEMQAPTDTCLELLDRQGLPCVTTSAPAVTVLAPAGPRMPVAVVLSNGRLIWRELERGGANSEYMAQLDPEEEVTAAAWEVVAGDLLAGGGEGPQTMAFLGTSYGRVYRVGPLGGGGVRRGNAVMASGAMARPGGLSDYLPWRIRGPGPLESVRSLMVWEEPTGQEARRVMTLTGEGVHLYDASGAILLQLKLLEQLRGMCSNDSVTLVRATWLAPRVVLLAAAVGAVEGEAHLSLFLLDFREQRSTSSVRVIPLVLELAAPTAGSSSLDALLQTQLVSSRGNTRTDLLAYVIHAFDSHQEGFVSIVNFRLDDGSQSLEPDSLQIRSMAVPRGVIGEGLTAGRLLGTGMYLRTDGLILLMEPNCVMRVRYLRHARGPSAKQGAAWARDGGHGSRGRELTEKLQAAFRLHLDARPAAAQSILEAEGLFDLPDGDSDLGAGLLCAIWQDVDLEPDTAPYWAGQGPLPPQHKGSQDVAEGETFHLLIQQSLRRKLAVAERWLRFVTETGLWTKLTEAQAEALLEGAEHVAACEQICEALLPGGGHQGERKGRDMPIALRKLLREHAMPRWGEDLGPHVRARLEAAGLPPLDIFLANPSQVVGKLASLQAARKEFIRRTAQPVPQKEQVEASVAVTVVVRRALEAAINRRARLRKEYGLRPHTGGQGGWLTEPPTLQVMECEVGRLQDLKRETTKLIPTQRAAIGEEARLLGVRWLELGTLSGRWKAAGEETRKKKRLAVTCVAEYGLAREAIDMARRFAAWEVLGELEYQYRDWAPLVEDMARHQEVAAHVLNWLLECAHLEDVLEYGATSSMARAEIEKIFMSRPDQLAAARLSWIHHTHVQAFDNGAQDLLGLADEEKTLDLKRLWVDIGILSDETARNHSQSEEINLEARWALQEEQELLQAQSWLVSLIRDGQQDAKGAMKSLQEGVAIGPSQTIEALIQLVPLRGTSKEKAVELSLRAMDLIEHYGGRRQEVPRPVVRQLVEALWEALLRRDDDWNLVWCNCGTVDPGRNIEETAYATVIRRYFESPRRKEDRRHYSELLSTPTEDVLAVVVRGVLATTKYKPQYSALLTALDRTRNTLWREFGEK 1172
            MSFLPAKRRRGGKQAVQVRSLRNYLLVDNADQGQVGLLPESVACNLSGCDASSILAGVDDRTARAYILAGNRLFTWRLEPAELDKEMQAPTDTCLELLDRQGLPCVTTSAPAVTVLAPAGPRMPVAVVLSNGRLIWRELERGGANSEYMAQLDPEEEVTAAAWEVVAGDLLAGGGEGPQTMAFLGTSYGRVYRVGPLGGGGVRRGNAVMASGAMARPGGLSDYLPWRIRGPGPLESVRSLMVWEEPTGQEARRVMTLTGEGVHLYDASGAILLQLKLLEQLRGMCSNDSVTLVRATWLAPRVVLLAAAVGAVEGEAHLSLFLLDFREQRSTSSVRVIPLVLELAAPTAGSSSLDALLQTQLVSSRGNTRTDLLAYVIHAFDSHQEGFVSIVNFRLDDGSQSLEPDSLQIRSMAVPRGVIGEGLTAGRLLGTGMYLRTDGLILLMEPNCVMRVRYLRHARGPSAKQGAAWARDGGHGSRGRELTEKLQAAFRLHLDARPAAAQSILEAEGLFDLPDGDSDLGAGLLCAIWQDVDLEPDTAPYWAGQGPLPPQHKGSQDVAEGETFHLLIQQSLRRKLAVAERWLRFVTETGLWTKLTEAQAEALLEGAEHVAACEQICEALLPGGGHQGERKGRDMPIALRKLLREHAMPRWGEDLGPHVRARLEAAGLPPLDIFLANPSQVVGKLASLQAARKEFIRRTAQPVPQKEQVEASVAVTVVVRRALEAAINRRARLRKEYGLRPHTGGQGGWLTEPPTLQVMECEVGRLQDLKRETTKLIPTQRAAIGEEARLLGVRWLELGTLSGRWKAAGEETRKKKRLAVTCVAEYGLAREAIDMARRFAAWEVLGELEYQYRDWAPLVEDMARHQEVAAHVLNWLLECAHLEDVLEYGATSSMARAEIEKIFMSRPDQLAAARLSWIHHTHVQAFDNGAQDLLGLADEEKTLDLKRLWVDIGILSDETARNHSQSEEINLEARWALQEEQELLQAQSWLVSLIRDGQQDAKGAMKSLQEGVAIGPSQTIEALIQLVPLRGTSKEKAVELSLRAMDLIEHYGGRRQEVPRPVVRQLVEALWEALLRRDDDWNLVWCNCGTVDPGRNIEETAYATVIRRYFESPRRKEDRRHYSELLSTPTEDVLAVVVRGVLATTKYKPQYSALLTALDRTRNTLWREFGEK
Sbjct:    1 MSFLPAKRRRGGKQAVQVRSLRNYLLVDNADQGQVGLLPESVACNLSGCDASSILAGVDDRTARAYILAGNRLFTWRLEPAELDKEMQAPTDTCLELLDRQGLPCVTTSAPAVTVLAPAGPRMPVAVVLSNGRLIWRELERGGANSEYMAQLDPEEEVTAAAWEVVAGDLLAGGGEGPQTMAFLGTSYGRVYRVGPLGGGGVRRGNAVMASGAMARPGGLSDYLPWRIRGPGPLESVRSLMVWEEPTGQEARRVMTLTGEGVHLYDASGAILLQLKLLEQLRGMCSNDSVTLVRATWLAPRVVLLAAAVGAVEGEAHLSLFLLDFREQRSTSSVRVIPLVLELAAPTAGSSSLDALLQTQLVSSRGNTRTDLLAYVIHAFDSHQEGFVSIVNFRLDDGSQSLEPDSLQIRSMAVPRGVIGEGLTAGRLLGTGMYLRTDGLILLMEPNCVMRVRYLRHARGPSAKQGAAWARDGGHGSRGRELTEKLQAAFRLHLDARPAAAQSILEAEGLFDLPDGDSDLGAGLLCAIWQDVDLEPDTAPYWAGQGPLPPQHKGSQDVAEGETFHLLIQQSLRRKLAVAERWLRFVTETGLWTKLTEAQAEALLEGAEHVAACEQICEALLPGGGHQGERKGRDMPIALRKLLREHAMPRWGEDLGPHVRARLEAAGLPPLDIFLANPSQVVGKLASLQAARKEFIRRTAQPVPQKEQVEASVAVTVVVRRALEAAINRRARLRKEYGLRPHTGGQGGWLTEPPTLQVMECEVGRLQDLKRETTKLIPTQRAAIGEEARLLGVRWLELGTLSGRWKAAGEETRKKKRLAVTCVAEYGLAREAIDMARRFAAWEVLGELEYQYRDWAPLVEDMARHQEVAAHVLNWLLECAHLEDVLEYGATSSMARAEIEKIFMSRPDQLAAARLSWIHHTHVQAFDNGAQDLLGLADEEKTLDLKRLWVDIGILSDETARNHSQSEEINLEARWALQEEQELLQAQSWLVSLIRDGQQDAKGAMKSLQEGVAIGPSQTIEALIQLVPLRGTSKEKAVELSLRAMDLIEHYGGRRQEVPRPVVRQLVEALWEALLRRDDDWNLVWCNCGTVDPGRNIEETAYATVIRRYFESPRRKEDRRHYSELLSTPTEDVLAVVVRGVLATTKYKPQYSALLTALDRTRNTLWREFGEK 1172
The following BLAST results are available for this feature:
BLAST of EWM23663.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585104817|gb|EWM23663.1|0.000e+0100.00hypothetical protein Naga_100030g33 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7012rna7012Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications