EWM23793.1, cds6880 (CDS) Nannochloropsis gaditana

Overview
NameEWM23793.1
Unique Namecds6880
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:741156..741250 -
Alignment locationCM002469.1:740985..741006 -
Alignment locationCM002469.1:740773..740886 -
Alignment locationCM002469.1:740434..740493 -
Alignment locationCM002469.1:740185..740260 -
Alignment locationCM002469.1:739726..739966 -
Alignment locationCM002469.1:739565..739579 -
Alignment locationCM002469.1:739502..739508 -

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Properties
Property NameValue
Protein idEWM23793.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100537g1.2045.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:741156..741250 -
CM002469.1supercontigCM002469.1:740985..741006 -
CM002469.1supercontigCM002469.1:740773..740886 -
CM002469.1supercontigCM002469.1:740434..740493 -
CM002469.1supercontigCM002469.1:740185..740260 -
CM002469.1supercontigCM002469.1:739726..739966 -
CM002469.1supercontigCM002469.1:739565..739579 -
CM002469.1supercontigCM002469.1:739502..739508 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR0123416hp_glycosidase
Homology
BLAST of EWM23793.1 vs. NCBI_GenBank
Match: gi|585105025|gb|EWM23793.1| (hypothetical protein Naga_100537g1 [Nannochloropsis gaditana])

HSP 1 Score: 435.647 bits (1119), Expect = 9.341e-155
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
Query:    1 MYMILKPLIALVAWTAFSVVAAEQCATPPKLRRVQVNTEVKHIDLGVSGGSGPSIAANGTDFFLMQFAIDLPEPVYDGWNITLRFDKTIFMIQNLEADLIEHNADNTTLIFGPKEWNQDLKPGFQWQAWQGSCAGSPLHVLESYLSYDPTALPPSRPPPRPLHMEPPGVTVHLPVEGEKFNLAKSLQFSMLFYEAQRSGRMPSNKRVSR 209
            MYMILKPLIALVAWTAFSVVAAEQCATPPKLRRVQVNTEVKHIDLGVSGGSGPSIAANGTDFFLMQFAIDLPEPVYDGWNITLRFDKTIFMIQNLEADLIEHNADNTTLIFGPKEWNQDLKPGFQWQAWQGSCAGSPLHVLESYLSYDPTALPPSRPPPRPLHMEPPGVTVHLPVEGEKFNLAKSLQFSMLFYEAQRSGRMPSNKRVSR
Sbjct:    1 MYMILKPLIALVAWTAFSVVAAEQCATPPKLRRVQVNTEVKHIDLGVSGGSGPSIAANGTDFFLMQFAIDLPEPVYDGWNITLRFDKTIFMIQNLEADLIEHNADNTTLIFGPKEWNQDLKPGFQWQAWQGSCAGSPLHVLESYLSYDPTALPPSRPPPRPLHMEPPGVTVHLPVEGEKFNLAKSLQFSMLFYEAQRSGRMPSNKRVSR 209          
BLAST of EWM23793.1 vs. NCBI_GenBank
Match: gi|1207947248|ref|XP_021363498.1| (uncharacterized protein LOC110456830 isoform X2 [Mizuhopecten yessoensis] >gi|1205895750|gb|OWF45591.1| Endoglucanase E-4 [Mizuhopecten yessoensis])

HSP 1 Score: 59.6918 bits (143), Expect = 5.071e-7
Identity = 45/152 (29.61%), Postives = 71/152 (46.71%), Query Frame = 0
Query:   63 FLMQFAIDLPEPVYDGWNITLRFDKTIFMIQNLEADLIEHNADNTTLIF------GPKEWNQDLKPGFQWQAWQGSCAGSPLHVLESYLSYDPTALPPSRPPPRPLHMEPPGVTVHLPVEGEKFNLAKSLQFSMLFYEAQRSGRMPSNKRVS 208
            F  +F  ++PE V  GW + L FD+ +  +     D+I+   DNT  +       G +   Q L    Q  A+ GS   +    L + +++D   +PP+   P                 G K+N  + L+ S+LFYEAQRSG++P N R+S
Sbjct:   34 FEGKFVFNIPEEV-AGWEVILHFDEPVTGLTEWMGDIIKTANDNTEYVLVSKPHTGIQHVGQTLSITVQ-AAYSGSAPPTAKGTLVN-MAHDGQTVPPAPTVP-----------------GAKYNYDEVLEKSILFYEAQRSGKLPPNNRIS 165          
BLAST of EWM23793.1 vs. NCBI_GenBank
Match: gi|1207947246|ref|XP_021363497.1| (uncharacterized protein LOC110456830 isoform X1 [Mizuhopecten yessoensis])

HSP 1 Score: 59.6918 bits (143), Expect = 5.337e-7
Identity = 45/152 (29.61%), Postives = 71/152 (46.71%), Query Frame = 0
Query:   63 FLMQFAIDLPEPVYDGWNITLRFDKTIFMIQNLEADLIEHNADNTTLIF------GPKEWNQDLKPGFQWQAWQGSCAGSPLHVLESYLSYDPTALPPSRPPPRPLHMEPPGVTVHLPVEGEKFNLAKSLQFSMLFYEAQRSGRMPSNKRVS 208
            F  +F  ++PE V  GW + L FD+ +  +     D+I+   DNT  +       G +   Q L    Q  A+ GS   +    L + +++D   +PP+   P                 G K+N  + L+ S+LFYEAQRSG++P N R+S
Sbjct:   42 FEGKFVFNIPEEV-AGWEVILHFDEPVTGLTEWMGDIIKTANDNTEYVLVSKPHTGIQHVGQTLSITVQ-AAYSGSAPPTAKGTLVN-MAHDGQTVPPAPTVP-----------------GAKYNYDEVLEKSILFYEAQRSGKLPPNNRIS 173          
The following BLAST results are available for this feature:
BLAST of EWM23793.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105025|gb|EWM23793.1|9.341e-155100.00hypothetical protein Naga_100537g1 [Nannochloropsi... [more]
gi|1207947248|ref|XP_021363498.1|5.071e-729.61uncharacterized protein LOC110456830 isoform X2 [M... [more]
gi|1207947246|ref|XP_021363497.1|5.337e-729.61uncharacterized protein LOC110456830 isoform X1 [M... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6896rna6896Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications