EWM23849.1, cds6825 (CDS) Nannochloropsis gaditana

Overview
NameEWM23849.1
Unique Namecds6825
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:621230..621814 +
Alignment locationCM002469.1:621971..622102 +

Link to JBrowse

Properties
Property NameValue
End range.
End range622102
Protein idEWM23849.1
Productgtp-binding protein obg
Partialtrue
Orig transcript idgnl|cribi|Naga_100865g3.7098.mrna
GenePObg2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:621230..621814 +
CM002469.1supercontigCM002469.1:621971..622102 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR006169GTP1_OBG_dom
Homology
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|585105120|gb|EWM23849.1| (gtp-binding protein obg, partial [Nannochloropsis gaditana])

HSP 1 Score: 479.559 bits (1233), Expect = 4.171e-171
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MEGLRGPALSTGRKSVDCRHTPSILDLFSVLVHRGQGLLRSALACPSVRRLRLSPLPSFLSMAILLQLAHASTTCIPVNAARASSPCCFILPRPFLSRIALRLPSLSPPASSHAHIRTNRRFSMVNEERLGLRNVDPEFAFFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPPLSLHSPSLP 239
            MEGLRGPALSTGRKSVDCRHTPSILDLFSVLVHRGQGLLRSALACPSVRRLRLSPLPSFLSMAILLQLAHASTTCIPVNAARASSPCCFILPRPFLSRIALRLPSLSPPASSHAHIRTNRRFSMVNEERLGLRNVDPEFAFFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPPLSLHSPSLP
Sbjct:    1 MEGLRGPALSTGRKSVDCRHTPSILDLFSVLVHRGQGLLRSALACPSVRRLRLSPLPSFLSMAILLQLAHASTTCIPVNAARASSPCCFILPRPFLSRIALRLPSLSPPASSHAHIRTNRRFSMVNEERLGLRNVDPEFAFFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPPLSLHSPSLP 239          
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|873238276|emb|CEL95984.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 82.8037 bits (203), Expect = 1.436e-14
Identity = 63/146 (43.15%), Postives = 81/146 (55.48%), Query Frame = 0
Query:   96 LSRIALRLPSLSPPASSHAHIRTNRRFSMVNEERLGLR---NVDP--------EFAFFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPP 230
            + R  L   +L+P     A   T RR    N    G+R   NV+         +  F+DQA +YVR GSGG GA TFK L GR +G  +GGSGG+GG V  +CD K+NTLQ  RGRASF A +G+ G    K G +   V ++VPP
Sbjct:    1 MGRDDLSFIALAPRIRRSAAWHTRRRRGKANRVCEGVRMMVNVEGSLKKDKRLDLQFYDQADVYVRGGSGGPGAVTFKPLRGRGQGPPNGGSGGRGGSVYLLCDNKMNTLQGLRGRASFRASHGEAGGFGFKTGKNAPDVIIRVPP 146          
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|298708794|emb|CBJ30754.1| (PObg2, plastid Obg/CgtA-like GTPase 2 [Ectocarpus siliculosus])

HSP 1 Score: 80.4925 bits (197), Expect = 9.153e-14
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 0
Query:  132 LRNVDPEFAFFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPP 230
            LR+ D EF F+D+AQ+YVR GSGG GAA+FK++  +Q+G  +GGSGGKGGDV  +C+  +NTL   RG  SF A+ G  G ++L NG DG  +EV VPP
Sbjct:  107 LRDRDLEFMFYDEAQVYVRGGSGGEGAASFKVMAKKQRGQPNGGSGGKGGDVSLVCESSLNTLVNLRGTMSFVAQKGTAGQQRLTNGKDGGSIEVPVPP 205          
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|1200594229|gb|OUX03862.1| (GTPase ObgE [Pelagibacteraceae bacterium TMED247])

HSP 1 Score: 65.855 bits (159), Expect = 4.707e-9
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 0
Query:  141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVP 229
            F DQA++Y+RAG+GG+GA++F+     + G  DGG GG GG ++   +R +NTL  FR R  F AENGK G ++ K GA G+ + +KVP
Sbjct:    3 FLDQAKIYIRAGNGGSGASSFRREKYVEFGGPDGGDGGSGGSIILESERNLNTLIDFRYRQHFKAENGKPGSKKNKTGAGGKNLILKVP 91          
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|1200637739|gb|OUX45523.1| (GTPase ObgE [Pelagibacteraceae bacterium TMED272])

HSP 1 Score: 63.929 bits (154), Expect = 2.195e-8
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 0
Query:  141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVP 229
            F DQA++Y++AG+GG+G+A+F+     + G  DGG GG GG ++   DR +NTL  FR    F A+NGK G ++ K GADG+ + +KVP
Sbjct:    3 FLDQAKIYIKAGNGGSGSASFRREKFIEFGGPDGGDGGDGGSIIVESDRNLNTLIDFRYAQHFKAQNGKPGSKRNKTGADGEDLILKVP 91          
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|1200508525|gb|OUW22176.1| (GTPase ObgE [Pelagibacteraceae bacterium TMED165])

HSP 1 Score: 63.929 bits (154), Expect = 2.759e-8
Identity = 39/89 (43.82%), Postives = 61/89 (68.54%), Query Frame = 0
Query:  141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVP 229
            F DQA++Y++AG+GG+G+A+F+     + G  DGG GG GG ++F+ DR +NTL  +R    F AE+GK G ++ K G +G+ + +KVP
Sbjct:    3 FLDQAKIYIKAGNGGSGSASFRREKFIEFGGPDGGDGGSGGSIIFLSDRNLNTLIDYRYTQHFKAEHGKSGSKRNKTGGNGKDMILKVP 91          
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|339284741|gb|AEJ38852.1| (GTP-binding protein Obg/CgtA [Sulfobacillus acidophilus TPY] >gi|361054928|gb|AEW06445.1| GTPase obg [Sulfobacillus acidophilus DSM 10332])

HSP 1 Score: 63.1586 bits (152), Expect = 5.609e-8
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 0
Query:  141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPPLSL 233
            F D+  ++V+AG+GG GA  F+       G   GG GG+GGD++F  D  +NTL  FR +  F A NG+ G    K+GADG+ V V+VPP +L
Sbjct:    2 FVDEVTIFVQAGNGGNGAVAFRREKYVPNGGPAGGDGGRGGDIIFQVDPGLNTLMDFRHQRHFRAPNGEPGGNNRKHGADGEDVVVRVPPGTL 94          
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|1120393294|ref|WP_073256859.1| (GTPase ObgE [Caldanaerovirga acetigignens] >gi|1109686668|emb|SHM61740.1| GTP-binding protein [Caldanaerovirga acetigignens])

HSP 1 Score: 62.7734 bits (151), Expect = 8.035e-8
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0
Query:  141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPP 230
            F D+A++YV+AG GG GA  F+      +G   GG GGKGGDVV + DR ++TLQ FR +  + AE G++G    K G  G+ + ++VPP
Sbjct:    2 FVDKAKIYVKAGDGGNGAVAFRREKYVPRGGPSGGDGGKGGDVVLLVDRNLSTLQDFRYKVHYKAERGQNGQGSNKAGKSGEDLIIRVPP 91          
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|1200546275|gb|OUW58209.1| (GTPase ObgE [Pelagibacteraceae bacterium TMED197])

HSP 1 Score: 62.3882 bits (150), Expect = 8.164e-8
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 0
Query:  141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVP 229
            F DQA++Y++AG+GG+G+A+F+     + G  DGG GG GG +V   DR +NTL  FR    F A++GK G ++ K GA+G+ + +KVP
Sbjct:    3 FLDQAKIYIKAGNGGSGSASFRREKFIEYGGPDGGDGGNGGSIVIKSDRNLNTLIDFRFAQHFKAQHGKQGSKRNKTGANGEDLILKVP 91          
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|654607614|ref|WP_028072829.1| (GTPase ObgE [Solirubrobacterales bacterium URHD0059])

HSP 1 Score: 62.7734 bits (151), Expect = 8.532e-8
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 0
Query:  141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPP 230
             +D+A+++V+AG GG G  +F+      KG  DGG GG GGDVV +CD     LQ+F+ RA + A+ G+ G+  L++GADG+ + V+VPP
Sbjct:    2 LYDKARIFVQAGGGGNGCMSFRREAHVPKGGPDGGDGGHGGDVVLLCDDSYRDLQSFKRRAHYKADRGRHGEGALRHGADGEDLVVRVPP 91          
The following BLAST results are available for this feature:
BLAST of EWM23849.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105120|gb|EWM23849.1|4.171e-171100.00gtp-binding protein obg, partial [Nannochloropsis ... [more]
gi|873238276|emb|CEL95984.1|1.436e-1443.15unnamed protein product [Vitrella brassicaformis C... [more]
gi|298708794|emb|CBJ30754.1|9.153e-1454.55PObg2, plastid Obg/CgtA-like GTPase 2 [Ectocarpus ... [more]
gi|1200594229|gb|OUX03862.1|4.707e-947.19GTPase ObgE [Pelagibacteraceae bacterium TMED247][more]
gi|1200637739|gb|OUX45523.1|2.195e-846.07GTPase ObgE [Pelagibacteraceae bacterium TMED272][more]
gi|1200508525|gb|OUW22176.1|2.759e-843.82GTPase ObgE [Pelagibacteraceae bacterium TMED165][more]
gi|339284741|gb|AEJ38852.1|5.609e-844.09GTP-binding protein Obg/CgtA [Sulfobacillus acidop... [more]
gi|1120393294|ref|WP_073256859.1|8.035e-844.44GTPase ObgE [Caldanaerovirga acetigignens] >gi|110... [more]
gi|1200546275|gb|OUW58209.1|8.164e-844.94GTPase ObgE [Pelagibacteraceae bacterium TMED197][more]
gi|654607614|ref|WP_028072829.1|8.532e-844.44GTPase ObgE [Solirubrobacterales bacterium URHD005... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6841rna6841Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications