EWM23849.1, cds6825 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|585105120|gb|EWM23849.1| (gtp-binding protein obg, partial [Nannochloropsis gaditana]) HSP 1 Score: 479.559 bits (1233), Expect = 4.171e-171 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query: 1 MEGLRGPALSTGRKSVDCRHTPSILDLFSVLVHRGQGLLRSALACPSVRRLRLSPLPSFLSMAILLQLAHASTTCIPVNAARASSPCCFILPRPFLSRIALRLPSLSPPASSHAHIRTNRRFSMVNEERLGLRNVDPEFAFFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPPLSLHSPSLP 239
MEGLRGPALSTGRKSVDCRHTPSILDLFSVLVHRGQGLLRSALACPSVRRLRLSPLPSFLSMAILLQLAHASTTCIPVNAARASSPCCFILPRPFLSRIALRLPSLSPPASSHAHIRTNRRFSMVNEERLGLRNVDPEFAFFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPPLSLHSPSLP
Sbjct: 1 MEGLRGPALSTGRKSVDCRHTPSILDLFSVLVHRGQGLLRSALACPSVRRLRLSPLPSFLSMAILLQLAHASTTCIPVNAARASSPCCFILPRPFLSRIALRLPSLSPPASSHAHIRTNRRFSMVNEERLGLRNVDPEFAFFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPPLSLHSPSLP 239
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|873238276|emb|CEL95984.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 82.8037 bits (203), Expect = 1.436e-14 Identity = 63/146 (43.15%), Postives = 81/146 (55.48%), Query Frame = 0
Query: 96 LSRIALRLPSLSPPASSHAHIRTNRRFSMVNEERLGLR---NVDP--------EFAFFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPP 230
+ R L +L+P A T RR N G+R NV+ + F+DQA +YVR GSGG GA TFK L GR +G +GGSGG+GG V +CD K+NTLQ RGRASF A +G+ G K G + V ++VPP
Sbjct: 1 MGRDDLSFIALAPRIRRSAAWHTRRRRGKANRVCEGVRMMVNVEGSLKKDKRLDLQFYDQADVYVRGGSGGPGAVTFKPLRGRGQGPPNGGSGGRGGSVYLLCDNKMNTLQGLRGRASFRASHGEAGGFGFKTGKNAPDVIIRVPP 146
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|298708794|emb|CBJ30754.1| (PObg2, plastid Obg/CgtA-like GTPase 2 [Ectocarpus siliculosus]) HSP 1 Score: 80.4925 bits (197), Expect = 9.153e-14 Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 0
Query: 132 LRNVDPEFAFFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPP 230
LR+ D EF F+D+AQ+YVR GSGG GAA+FK++ +Q+G +GGSGGKGGDV +C+ +NTL RG SF A+ G G ++L NG DG +EV VPP
Sbjct: 107 LRDRDLEFMFYDEAQVYVRGGSGGEGAASFKVMAKKQRGQPNGGSGGKGGDVSLVCESSLNTLVNLRGTMSFVAQKGTAGQQRLTNGKDGGSIEVPVPP 205
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|1200594229|gb|OUX03862.1| (GTPase ObgE [Pelagibacteraceae bacterium TMED247]) HSP 1 Score: 65.855 bits (159), Expect = 4.707e-9 Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 0
Query: 141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVP 229
F DQA++Y+RAG+GG+GA++F+ + G DGG GG GG ++ +R +NTL FR R F AENGK G ++ K GA G+ + +KVP
Sbjct: 3 FLDQAKIYIRAGNGGSGASSFRREKYVEFGGPDGGDGGSGGSIILESERNLNTLIDFRYRQHFKAENGKPGSKKNKTGAGGKNLILKVP 91
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|1200637739|gb|OUX45523.1| (GTPase ObgE [Pelagibacteraceae bacterium TMED272]) HSP 1 Score: 63.929 bits (154), Expect = 2.195e-8 Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 0
Query: 141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVP 229
F DQA++Y++AG+GG+G+A+F+ + G DGG GG GG ++ DR +NTL FR F A+NGK G ++ K GADG+ + +KVP
Sbjct: 3 FLDQAKIYIKAGNGGSGSASFRREKFIEFGGPDGGDGGDGGSIIVESDRNLNTLIDFRYAQHFKAQNGKPGSKRNKTGADGEDLILKVP 91
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|1200508525|gb|OUW22176.1| (GTPase ObgE [Pelagibacteraceae bacterium TMED165]) HSP 1 Score: 63.929 bits (154), Expect = 2.759e-8 Identity = 39/89 (43.82%), Postives = 61/89 (68.54%), Query Frame = 0
Query: 141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVP 229
F DQA++Y++AG+GG+G+A+F+ + G DGG GG GG ++F+ DR +NTL +R F AE+GK G ++ K G +G+ + +KVP
Sbjct: 3 FLDQAKIYIKAGNGGSGSASFRREKFIEFGGPDGGDGGSGGSIIFLSDRNLNTLIDYRYTQHFKAEHGKSGSKRNKTGGNGKDMILKVP 91
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|339284741|gb|AEJ38852.1| (GTP-binding protein Obg/CgtA [Sulfobacillus acidophilus TPY] >gi|361054928|gb|AEW06445.1| GTPase obg [Sulfobacillus acidophilus DSM 10332]) HSP 1 Score: 63.1586 bits (152), Expect = 5.609e-8 Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 0
Query: 141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPPLSL 233
F D+ ++V+AG+GG GA F+ G GG GG+GGD++F D +NTL FR + F A NG+ G K+GADG+ V V+VPP +L
Sbjct: 2 FVDEVTIFVQAGNGGNGAVAFRREKYVPNGGPAGGDGGRGGDIIFQVDPGLNTLMDFRHQRHFRAPNGEPGGNNRKHGADGEDVVVRVPPGTL 94
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|1120393294|ref|WP_073256859.1| (GTPase ObgE [Caldanaerovirga acetigignens] >gi|1109686668|emb|SHM61740.1| GTP-binding protein [Caldanaerovirga acetigignens]) HSP 1 Score: 62.7734 bits (151), Expect = 8.035e-8 Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0
Query: 141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPP 230
F D+A++YV+AG GG GA F+ +G GG GGKGGDVV + DR ++TLQ FR + + AE G++G K G G+ + ++VPP
Sbjct: 2 FVDKAKIYVKAGDGGNGAVAFRREKYVPRGGPSGGDGGKGGDVVLLVDRNLSTLQDFRYKVHYKAERGQNGQGSNKAGKSGEDLIIRVPP 91
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|1200546275|gb|OUW58209.1| (GTPase ObgE [Pelagibacteraceae bacterium TMED197]) HSP 1 Score: 62.3882 bits (150), Expect = 8.164e-8 Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 0
Query: 141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVP 229
F DQA++Y++AG+GG+G+A+F+ + G DGG GG GG +V DR +NTL FR F A++GK G ++ K GA+G+ + +KVP
Sbjct: 3 FLDQAKIYIKAGNGGSGSASFRREKFIEYGGPDGGDGGNGGSIVIKSDRNLNTLIDFRFAQHFKAQHGKQGSKRNKTGANGEDLILKVP 91
BLAST of EWM23849.1 vs. NCBI_GenBank
Match: gi|654607614|ref|WP_028072829.1| (GTPase ObgE [Solirubrobacterales bacterium URHD0059]) HSP 1 Score: 62.7734 bits (151), Expect = 8.532e-8 Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 0
Query: 141 FFDQAQMYVRAGSGGAGAATFKLLNGRQKGMADGGSGGKGGDVVFICDRKINTLQAFRGRASFHAENGKDGDRQLKNGADGQGVEVKVPP 230
+D+A+++V+AG GG G +F+ KG DGG GG GGDVV +CD LQ+F+ RA + A+ G+ G+ L++GADG+ + V+VPP
Sbjct: 2 LYDKARIFVQAGGGGNGCMSFRREAHVPKGGPDGGDGGHGGDVVLLCDDSYRDLQSFKRRAHYKADRGRHGEGALRHGADGEDLVVRVPP 91 The following BLAST results are available for this feature:
BLAST of EWM23849.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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