EWM23873.1, cds6800 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23873.1 vs. NCBI_GenBank
Match: gi|585105149|gb|EWM23873.1| (nematode resistance hs1pro1 protein [Nannochloropsis gaditana]) HSP 1 Score: 1476.46 bits (3821), Expect = 0.000e+0 Identity = 719/719 (100.00%), Postives = 719/719 (100.00%), Query Frame = 0
Query: 1 MGFLHSIYKSFFINSSLQPATESDRSTCTRKGHDTSHPSCSPKGDAPTCSYKSSPLPQNTSTGCPFGFSSTRCDDIDDVERDEEVQNAGVSSTGATTFTPPLSGRNRVVLLYEHYIHLPALRAVWESPITERPELEPCFSAACHGMEIGYLLLAHFLTDQRTYVQKRSRVELVMEDLMRQYSLLAELVDGELEEEGPLDQCVRDGHAQPPTRGSGSPAPRPPQLLPSCSPSSPAFSLGAATDGSEDGSPTSFTETDSSSGSHLRTQGMGNPPSPSGGKTGGDKTDIPGGERPTSRSWGFPVPIKEEGSDQEAPVRLQPPRPLSSLTQDFPFPCCPPTSTVGARSPSLDLLLEALAQSLPAMTPSERVSVTKVIRNITHALDGASRAWSVGLGIEGQMNELRALVSLAPLASFQERESSSRHLDYARLIRPEVVVATYRDYPHTEDFFFRSVHLGTDCWAFTVIRRLQSARVLATGGDWYTASARVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLMEPLEAALLRLPLSPARAGISTGEGEGVGEGEGEGEDDLQQALLAVYEFPEAYPALYAYIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQSTRECCKAVVYIPFQAKTSRLYIIRDHTRQWEGDGQNKHLNRKKSVTPYTNRNLPRSCILVIEKVSRRKHREESRTPAT 719
MGFLHSIYKSFFINSSLQPATESDRSTCTRKGHDTSHPSCSPKGDAPTCSYKSSPLPQNTSTGCPFGFSSTRCDDIDDVERDEEVQNAGVSSTGATTFTPPLSGRNRVVLLYEHYIHLPALRAVWESPITERPELEPCFSAACHGMEIGYLLLAHFLTDQRTYVQKRSRVELVMEDLMRQYSLLAELVDGELEEEGPLDQCVRDGHAQPPTRGSGSPAPRPPQLLPSCSPSSPAFSLGAATDGSEDGSPTSFTETDSSSGSHLRTQGMGNPPSPSGGKTGGDKTDIPGGERPTSRSWGFPVPIKEEGSDQEAPVRLQPPRPLSSLTQDFPFPCCPPTSTVGARSPSLDLLLEALAQSLPAMTPSERVSVTKVIRNITHALDGASRAWSVGLGIEGQMNELRALVSLAPLASFQERESSSRHLDYARLIRPEVVVATYRDYPHTEDFFFRSVHLGTDCWAFTVIRRLQSARVLATGGDWYTASARVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLMEPLEAALLRLPLSPARAGISTGEGEGVGEGEGEGEDDLQQALLAVYEFPEAYPALYAYIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQSTRECCKAVVYIPFQAKTSRLYIIRDHTRQWEGDGQNKHLNRKKSVTPYTNRNLPRSCILVIEKVSRRKHREESRTPAT
Sbjct: 1 MGFLHSIYKSFFINSSLQPATESDRSTCTRKGHDTSHPSCSPKGDAPTCSYKSSPLPQNTSTGCPFGFSSTRCDDIDDVERDEEVQNAGVSSTGATTFTPPLSGRNRVVLLYEHYIHLPALRAVWESPITERPELEPCFSAACHGMEIGYLLLAHFLTDQRTYVQKRSRVELVMEDLMRQYSLLAELVDGELEEEGPLDQCVRDGHAQPPTRGSGSPAPRPPQLLPSCSPSSPAFSLGAATDGSEDGSPTSFTETDSSSGSHLRTQGMGNPPSPSGGKTGGDKTDIPGGERPTSRSWGFPVPIKEEGSDQEAPVRLQPPRPLSSLTQDFPFPCCPPTSTVGARSPSLDLLLEALAQSLPAMTPSERVSVTKVIRNITHALDGASRAWSVGLGIEGQMNELRALVSLAPLASFQERESSSRHLDYARLIRPEVVVATYRDYPHTEDFFFRSVHLGTDCWAFTVIRRLQSARVLATGGDWYTASARVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLMEPLEAALLRLPLSPARAGISTGEGEGVGEGEGEGEDDLQQALLAVYEFPEAYPALYAYIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQSTRECCKAVVYIPFQAKTSRLYIIRDHTRQWEGDGQNKHLNRKKSVTPYTNRNLPRSCILVIEKVSRRKHREESRTPAT 719
BLAST of EWM23873.1 vs. NCBI_GenBank
Match: gi|552839855|ref|XP_005849900.1| (hypothetical protein CHLNCDRAFT_143159 [Chlorella variabilis] >gi|307109560|gb|EFN57798.1| hypothetical protein CHLNCDRAFT_143159 [Chlorella variabilis]) HSP 1 Score: 280.411 bits (716), Expect = 3.361e-78 Identity = 166/330 (50.30%), Postives = 213/330 (64.55%), Query Frame = 0
Query: 324 SLTQDFPFPCCPPTSTVGARSPSLDLLLEALAQSLPAMTPSERVSVTKVIRNITHALDGASRAWSVGLGIEGQMNELRALVSLAPLASFQERESSSRHLDYARLIRPEVV--VATYRDYPHTEDFFFRSVHLGTDCWAFTVIRRLQSARVLATGGDWYTASARVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLMEPLEAALLRLPLSPARAGIS---TGEGEGVGE-GEGEGEDDLQQALLAVYEFPEAYPA---LYAYIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQSTRE 644
SLTQ FPF CPPT SP L L A+ ++ +M+ +ER S+ K++ NIT AL R W+VGLGIE Q+N LRA V L L + + + +LDY L++P + T Y H EDFFFR++HLGTDCWAF + RL+SA+ A G+W+ A+AR QA+ IL YLG HVM+LTSM L DYL LKV++EGTSGEGS V+SFRP ++L EPL AA L + + A A + + GEG E E D L+ AL+ +YE+P+ P LY Y KALE VE+ LLGGF++ HF LA NVIG EARGTM RAVAAL++ E
Sbjct: 128 SLTQAFPFEGCPPTKHEPCHSPGLQRLTVAIDANIDSMSSAERNSLIKLVLNITAALSSFQR-WTVGLGIEPQLNSLRAAVGLPAL-----QFTHTLNLDYDSLVKPWLCEQTLTCETYTHAEDFFFRTIHLGTDCWAFVALSRLRSAQQCAEAGNWHVAAARATQASRILQYLGSHVMLLTSMNLWDYLLLKVELEGTSGEGSVQVKSFRPTVRQLFEPLAAAALGVGGATAAAAAAAACSMPGEGQQEQSRQELIDQLEAALMEIYEWPDRQPGKPRLYNYCKALEAVETGLLGGFFYRHFCLATNVIGSEARGTMKRAVAALKAGYE 451 HSP 2 Score: 93.2041 bits (230), Expect = 8.504e-16 Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 0
Query: 103 SGRNRVVLLYEHYIHLPALRAVWESPITERPELEPCFSAACHGMEIGYLLLAHFLTDQRTYVQKRSRVELVMEDLMRQYSLLAELVD 189
SGR R+ LLYE Y+HLP LR VWE+P TE+P LEP F+A HG+E+ LLLA F++D R YV KR R ELV ED+ Q LL E+VD
Sbjct: 25 SGRARIRLLYEEYVHLPMLRQVWEAPSTEKPVLEPLFAAGFHGIELALLLLAEFVSDGRRYVAKRPR-ELVAEDIATQCQLLTEVVD 110
BLAST of EWM23873.1 vs. NCBI_GenBank
Match: gi|698808226|ref|XP_009837142.1| (hypothetical protein H257_11808 [Aphanomyces astaci] >gi|574107757|gb|ETV73267.1| hypothetical protein H257_11808 [Aphanomyces astaci]) HSP 1 Score: 68.5514 bits (166), Expect = 3.149e-8 Identity = 70/261 (26.82%), Postives = 112/261 (42.91%), Query Frame = 0
Query: 421 HLDYARLIRPEVVVATYR--DYPHTEDFFFRSVHLGTDCWAFTVIRRLQSAR-----VLATGGDWYT--------------ASARVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLM---------EPLEAALLR---LPLSPARAGISTGEGEGVGEGEGEGEDDLQQALLAVYEFPEAYPALYA--YIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQSTRECC 646
H+ Y ++ P + + R D ED FF +VH + W + R+L +A+ VL + + R R A H YL +H+ ML+ M RDYL LK + G SG S +R L+ +P + + LR LS +A ++ E LQ L+A++ P+ A ++A++ +E+A + FYF H +LA+ V+G +A GT V AL+ + C
Sbjct: 203 HVPYDDVVLPLHIRTSCREADAEFVEDHFFATVHQIVEAWCCVMERQLDAAQAEVDLVLQRSSLASSSSLDDEPVEDLLQRVTRRYRWAGHCWEYLIDHISMLSEMDARDYLSLKFHLHGASGGQSVRLRQLTARIPHLLPWGPPLSYIDPFDPSELRHVVAVLSHVQANVT--------------EIPLQAELVAMFH-AHVSPSSDAVQMLQAVQMLENA-VRRFYFGHQQLAIMVLGADASGTQELTVKALERGWKVC 447
BLAST of EWM23873.1 vs. NCBI_GenBank
Match: gi|1173946242|gb|OQR94792.1| (selenocysteine lyase [Achlya hypogyna]) HSP 1 Score: 65.4698 bits (158), Expect = 2.887e-7 Identity = 71/256 (27.73%), Postives = 107/256 (41.80%), Query Frame = 0
Query: 416 ESSSRHLDYARLIRP----EVVVATYRDYPHTEDFFFRSVHLGTDCWAFTVIRRLQSAR-------VLATGGDWYTASA------RVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLMEPLEAALLRLPLSPARAG------------ISTGEGEGVGEGEGEGEDDLQ--QALLAVYEFPEAYPALYAYIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQ 640
+ S L Y +L+ P E V D ED FF +VH T+ W + R+L A+ + AT + +A R R A I YL +H+ ML+ M DYL LK+ + G SG S +R LM PL L P A ++ E + + + D ++ Q + A + P A ++A++ +E+A + FYF H LA+ V+G A GT V L+
Sbjct: 251 KDSGLQLPYDKLVLPRHTREHCVQDEDDEQFVEDHFFATVHQITEAWCCVMERQLDVAQWDLDHLDLSATADEAANNAALSRVARRYRFACQIWEYLIDHISMLSEMDSADYLTLKLHLHGASGGQSVRLRQLGRRIAHLM-PLVPTCLAEYTGPESAATDPSALVDMLRVLAQVRSEKPEDEQADKHDLVRTLQMMFAAHTAPAA--QCIQIVQAIQMLENA-VRRFYFGHQHLAIMVLGAGAAGTQELTVKMLE 502 The following BLAST results are available for this feature:
BLAST of EWM23873.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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