EWM23873.1, cds6800 (CDS) Nannochloropsis gaditana

Overview
NameEWM23873.1
Unique Namecds6800
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:570945..572048 -
Alignment locationCM002469.1:570511..570766 -
Alignment locationCM002469.1:570141..570322 -
Alignment locationCM002469.1:569767..570021 -
Alignment locationCM002469.1:569497..569624 -
Alignment locationCM002469.1:568934..569168 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23873.1
Productnematode resistance hs1pro1 protein
Orig transcript idgnl|cribi|Naga_100202g11.198.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:570945..572048 -
CM002469.1supercontigCM002469.1:570511..570766 -
CM002469.1supercontigCM002469.1:570141..570322 -
CM002469.1supercontigCM002469.1:569767..570021 -
CM002469.1supercontigCM002469.1:569497..569624 -
CM002469.1supercontigCM002469.1:568934..569168 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0009056catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of EWM23873.1 vs. NCBI_GenBank
Match: gi|585105149|gb|EWM23873.1| (nematode resistance hs1pro1 protein [Nannochloropsis gaditana])

HSP 1 Score: 1476.46 bits (3821), Expect = 0.000e+0
Identity = 719/719 (100.00%), Postives = 719/719 (100.00%), Query Frame = 0
Query:    1 MGFLHSIYKSFFINSSLQPATESDRSTCTRKGHDTSHPSCSPKGDAPTCSYKSSPLPQNTSTGCPFGFSSTRCDDIDDVERDEEVQNAGVSSTGATTFTPPLSGRNRVVLLYEHYIHLPALRAVWESPITERPELEPCFSAACHGMEIGYLLLAHFLTDQRTYVQKRSRVELVMEDLMRQYSLLAELVDGELEEEGPLDQCVRDGHAQPPTRGSGSPAPRPPQLLPSCSPSSPAFSLGAATDGSEDGSPTSFTETDSSSGSHLRTQGMGNPPSPSGGKTGGDKTDIPGGERPTSRSWGFPVPIKEEGSDQEAPVRLQPPRPLSSLTQDFPFPCCPPTSTVGARSPSLDLLLEALAQSLPAMTPSERVSVTKVIRNITHALDGASRAWSVGLGIEGQMNELRALVSLAPLASFQERESSSRHLDYARLIRPEVVVATYRDYPHTEDFFFRSVHLGTDCWAFTVIRRLQSARVLATGGDWYTASARVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLMEPLEAALLRLPLSPARAGISTGEGEGVGEGEGEGEDDLQQALLAVYEFPEAYPALYAYIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQSTRECCKAVVYIPFQAKTSRLYIIRDHTRQWEGDGQNKHLNRKKSVTPYTNRNLPRSCILVIEKVSRRKHREESRTPAT 719
            MGFLHSIYKSFFINSSLQPATESDRSTCTRKGHDTSHPSCSPKGDAPTCSYKSSPLPQNTSTGCPFGFSSTRCDDIDDVERDEEVQNAGVSSTGATTFTPPLSGRNRVVLLYEHYIHLPALRAVWESPITERPELEPCFSAACHGMEIGYLLLAHFLTDQRTYVQKRSRVELVMEDLMRQYSLLAELVDGELEEEGPLDQCVRDGHAQPPTRGSGSPAPRPPQLLPSCSPSSPAFSLGAATDGSEDGSPTSFTETDSSSGSHLRTQGMGNPPSPSGGKTGGDKTDIPGGERPTSRSWGFPVPIKEEGSDQEAPVRLQPPRPLSSLTQDFPFPCCPPTSTVGARSPSLDLLLEALAQSLPAMTPSERVSVTKVIRNITHALDGASRAWSVGLGIEGQMNELRALVSLAPLASFQERESSSRHLDYARLIRPEVVVATYRDYPHTEDFFFRSVHLGTDCWAFTVIRRLQSARVLATGGDWYTASARVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLMEPLEAALLRLPLSPARAGISTGEGEGVGEGEGEGEDDLQQALLAVYEFPEAYPALYAYIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQSTRECCKAVVYIPFQAKTSRLYIIRDHTRQWEGDGQNKHLNRKKSVTPYTNRNLPRSCILVIEKVSRRKHREESRTPAT
Sbjct:    1 MGFLHSIYKSFFINSSLQPATESDRSTCTRKGHDTSHPSCSPKGDAPTCSYKSSPLPQNTSTGCPFGFSSTRCDDIDDVERDEEVQNAGVSSTGATTFTPPLSGRNRVVLLYEHYIHLPALRAVWESPITERPELEPCFSAACHGMEIGYLLLAHFLTDQRTYVQKRSRVELVMEDLMRQYSLLAELVDGELEEEGPLDQCVRDGHAQPPTRGSGSPAPRPPQLLPSCSPSSPAFSLGAATDGSEDGSPTSFTETDSSSGSHLRTQGMGNPPSPSGGKTGGDKTDIPGGERPTSRSWGFPVPIKEEGSDQEAPVRLQPPRPLSSLTQDFPFPCCPPTSTVGARSPSLDLLLEALAQSLPAMTPSERVSVTKVIRNITHALDGASRAWSVGLGIEGQMNELRALVSLAPLASFQERESSSRHLDYARLIRPEVVVATYRDYPHTEDFFFRSVHLGTDCWAFTVIRRLQSARVLATGGDWYTASARVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLMEPLEAALLRLPLSPARAGISTGEGEGVGEGEGEGEDDLQQALLAVYEFPEAYPALYAYIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQSTRECCKAVVYIPFQAKTSRLYIIRDHTRQWEGDGQNKHLNRKKSVTPYTNRNLPRSCILVIEKVSRRKHREESRTPAT 719          
BLAST of EWM23873.1 vs. NCBI_GenBank
Match: gi|552839855|ref|XP_005849900.1| (hypothetical protein CHLNCDRAFT_143159 [Chlorella variabilis] >gi|307109560|gb|EFN57798.1| hypothetical protein CHLNCDRAFT_143159 [Chlorella variabilis])

HSP 1 Score: 280.411 bits (716), Expect = 3.361e-78
Identity = 166/330 (50.30%), Postives = 213/330 (64.55%), Query Frame = 0
Query:  324 SLTQDFPFPCCPPTSTVGARSPSLDLLLEALAQSLPAMTPSERVSVTKVIRNITHALDGASRAWSVGLGIEGQMNELRALVSLAPLASFQERESSSRHLDYARLIRPEVV--VATYRDYPHTEDFFFRSVHLGTDCWAFTVIRRLQSARVLATGGDWYTASARVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLMEPLEAALLRLPLSPARAGIS---TGEGEGVGE-GEGEGEDDLQQALLAVYEFPEAYPA---LYAYIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQSTRE 644
            SLTQ FPF  CPPT      SP L  L  A+  ++ +M+ +ER S+ K++ NIT AL    R W+VGLGIE Q+N LRA V L  L     + + + +LDY  L++P +     T   Y H EDFFFR++HLGTDCWAF  + RL+SA+  A  G+W+ A+AR  QA+ IL YLG HVM+LTSM L DYL LKV++EGTSGEGS  V+SFRP  ++L EPL AA L +  + A A  +   +  GEG  E    E  D L+ AL+ +YE+P+  P    LY Y KALE VE+ LLGGF++ HF LA NVIG EARGTM RAVAAL++  E
Sbjct:  128 SLTQAFPFEGCPPTKHEPCHSPGLQRLTVAIDANIDSMSSAERNSLIKLVLNITAALSSFQR-WTVGLGIEPQLNSLRAAVGLPAL-----QFTHTLNLDYDSLVKPWLCEQTLTCETYTHAEDFFFRTIHLGTDCWAFVALSRLRSAQQCAEAGNWHVAAARATQASRILQYLGSHVMLLTSMNLWDYLLLKVELEGTSGEGSVQVKSFRPTVRQLFEPLAAAALGVGGATAAAAAAAACSMPGEGQQEQSRQELIDQLEAALMEIYEWPDRQPGKPRLYNYCKALEAVETGLLGGFFYRHFCLATNVIGSEARGTMKRAVAALKAGYE 451          

HSP 2 Score: 93.2041 bits (230), Expect = 8.504e-16
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 0
Query:  103 SGRNRVVLLYEHYIHLPALRAVWESPITERPELEPCFSAACHGMEIGYLLLAHFLTDQRTYVQKRSRVELVMEDLMRQYSLLAELVD 189
            SGR R+ LLYE Y+HLP LR VWE+P TE+P LEP F+A  HG+E+  LLLA F++D R YV KR R ELV ED+  Q  LL E+VD
Sbjct:   25 SGRARIRLLYEEYVHLPMLRQVWEAPSTEKPVLEPLFAAGFHGIELALLLLAEFVSDGRRYVAKRPR-ELVAEDIATQCQLLTEVVD 110          
BLAST of EWM23873.1 vs. NCBI_GenBank
Match: gi|698808226|ref|XP_009837142.1| (hypothetical protein H257_11808 [Aphanomyces astaci] >gi|574107757|gb|ETV73267.1| hypothetical protein H257_11808 [Aphanomyces astaci])

HSP 1 Score: 68.5514 bits (166), Expect = 3.149e-8
Identity = 70/261 (26.82%), Postives = 112/261 (42.91%), Query Frame = 0
Query:  421 HLDYARLIRPEVVVATYR--DYPHTEDFFFRSVHLGTDCWAFTVIRRLQSAR-----VLATGGDWYT--------------ASARVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLM---------EPLEAALLR---LPLSPARAGISTGEGEGVGEGEGEGEDDLQQALLAVYEFPEAYPALYA--YIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQSTRECC 646
            H+ Y  ++ P  +  + R  D    ED FF +VH   + W   + R+L +A+     VL       +               + R R A H   YL +H+ ML+ M  RDYL LK  + G SG  S  +R        L+         +P + + LR     LS  +A ++              E  LQ  L+A++      P+  A   ++A++ +E+A +  FYF H +LA+ V+G +A GT    V AL+   + C
Sbjct:  203 HVPYDDVVLPLHIRTSCREADAEFVEDHFFATVHQIVEAWCCVMERQLDAAQAEVDLVLQRSSLASSSSLDDEPVEDLLQRVTRRYRWAGHCWEYLIDHISMLSEMDARDYLSLKFHLHGASGGQSVRLRQLTARIPHLLPWGPPLSYIDPFDPSELRHVVAVLSHVQANVT--------------EIPLQAELVAMFH-AHVSPSSDAVQMLQAVQMLENA-VRRFYFGHQQLAIMVLGADASGTQELTVKALERGWKVC 447          
BLAST of EWM23873.1 vs. NCBI_GenBank
Match: gi|1173946242|gb|OQR94792.1| (selenocysteine lyase [Achlya hypogyna])

HSP 1 Score: 65.4698 bits (158), Expect = 2.887e-7
Identity = 71/256 (27.73%), Postives = 107/256 (41.80%), Query Frame = 0
Query:  416 ESSSRHLDYARLIRP----EVVVATYRDYPHTEDFFFRSVHLGTDCWAFTVIRRLQSAR-------VLATGGDWYTASA------RVRQAAHILCYLGEHVMMLTSMVLRDYLELKVQIEGTSGEGSSLVRSFRPYTKRLMEPLEAALLRLPLSPARAG------------ISTGEGEGVGEGEGEGEDDLQ--QALLAVYEFPEAYPALYAYIKALERVESALLGGFYFNHFRLAVNVIGGEARGTMNRAVAALQ 640
            + S   L Y +L+ P    E  V    D    ED FF +VH  T+ W   + R+L  A+       + AT  +    +A      R R A  I  YL +H+ ML+ M   DYL LK+ + G SG  S  +R        LM PL    L     P  A             ++    E   + + +  D ++  Q + A +  P A       ++A++ +E+A +  FYF H  LA+ V+G  A GT    V  L+
Sbjct:  251 KDSGLQLPYDKLVLPRHTREHCVQDEDDEQFVEDHFFATVHQITEAWCCVMERQLDVAQWDLDHLDLSATADEAANNAALSRVARRYRFACQIWEYLIDHISMLSEMDSADYLTLKLHLHGASGGQSVRLRQLGRRIAHLM-PLVPTCLAEYTGPESAATDPSALVDMLRVLAQVRSEKPEDEQADKHDLVRTLQMMFAAHTAPAA--QCIQIVQAIQMLENA-VRRFYFGHQHLAIMVLGAGAAGTQELTVKMLE 502          
The following BLAST results are available for this feature:
BLAST of EWM23873.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585105149|gb|EWM23873.1|0.000e+0100.00nematode resistance hs1pro1 protein [Nannochlorops... [more]
gi|552839855|ref|XP_005849900.1|3.361e-7850.30hypothetical protein CHLNCDRAFT_143159 [Chlorella ... [more]
gi|698808226|ref|XP_009837142.1|3.149e-826.82hypothetical protein H257_11808 [Aphanomyces astac... [more]
gi|1173946242|gb|OQR94792.1|2.887e-727.73selenocysteine lyase [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6816rna6816Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications