EWM23888.1, cds6788 (CDS) Nannochloropsis gaditana

Overview
NameEWM23888.1
Unique Namecds6788
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:550128..550823 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23888.1
Productrna-binding la domain protein
Orig transcript idgnl|cribi|Naga_100161g11.9657.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:550128..550823 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR006630Lupus_La_RNA-bd
Homology
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|585105169|gb|EWM23888.1| (rna-binding la domain protein [Nannochloropsis gaditana])

HSP 1 Score: 473.011 bits (1216), Expect = 8.888e-169
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEMGKRSVSVVKDV 231
            MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEMGKRSVSVVKDV
Sbjct:    1 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEMGKRSVSVVKDV 231          
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|553179012|ref|XP_005852635.1| (rna-binding la domain protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295897|gb|EKU23196.1| rna-binding la domain protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 470.315 bits (1209), Expect = 6.694e-167
Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0
Query:    1 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEMGKRSVSVVKDV 231
            MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEM KRSVSVVKDV
Sbjct:   48 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEMEKRSVSVVKDV 278          
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|299116106|emb|CBN74522.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 117.857 bits (294), Expect = 1.146e-27
Identity = 49/109 (44.95%), Postives = 75/109 (68.81%), Query Frame = 0
Query:    7 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPN-GRGGMGCPRWLKQAP 114
            E + Y+ ++AV+QIE+YF+V+NLCRD ++R+++DEEG++P+A + NFP VA F  +  +I   +  AS  L+ D  NET+R++E    WLLPN   G  G PR++K  P
Sbjct:  124 EQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGIL-ASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDP 231          
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|953495223|emb|CEG43130.1| (RNA-binding protein LARP/SRO9 and related La domain proteins [Plasmopara halstedii])

HSP 1 Score: 105.531 bits (262), Expect = 3.218e-24
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKL 123
            A  A  QIE+YF+ DNL RD +LR H+D +G+VPLA + +F  V S   DY  +++ ++  S  +E DE NE +RL+     W+ PN +GG G PR++KQ     P + ++
Sbjct:  126 AQWAKSQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKH-SDTIELDEKNEKIRLRTDWQKWVWPNAKGGYGVPRYIKQTESDSPGDKRM 235          
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|301099353|ref|XP_002898768.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262104841|gb|EEY62893.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 103.605 bits (257), Expect = 1.934e-23
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 0
Query:   13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPD 115
            A  A  QIE+YF+ DNL RD +LR H+D +G+VPLA + +F  V S   DY  +++ ++++ +V E DE NE +RL++    W+ PN  GG G PR++K A D
Sbjct:  124 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKQSETV-ELDEQNEKIRLRQGWQMWVWPNAEGGYGVPRYIKLAED 225          
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|695418924|ref|XP_009527529.1| (hypothetical protein PHYSODRAFT_286082 [Phytophthora sojae] >gi|348678654|gb|EGZ18471.1| hypothetical protein PHYSODRAFT_286082 [Phytophthora sojae])

HSP 1 Score: 103.605 bits (257), Expect = 1.989e-23
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQA 113
            A  A  QIE+YF+ DNL RD +LR H+D +G+VPLA + +F  V S   DY+ +++ +++ S  LE DE NE +RL+E    W+ PN  GG G PR++K A
Sbjct:  125 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYASLLEAVKQ-SETLELDEQNEKIRLREGWQKWVWPNAEGGYGVPRYIKVA 224          
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|970656591|gb|KUF94582.1| (E3 SUMO-protein ligase RanBP2 [Phytophthora nicotianae])

HSP 1 Score: 103.219 bits (256), Expect = 2.239e-23
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 0
Query:   13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESK 122
            A  A  QIE+YF+ DNL RD +LR H+D +G+VPLA + +F  V S   DY  +++ ++ + +V E DE NE +RL++    W+ PN  GG G PR++K A    P + K
Sbjct:  123 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETV-ELDEQNEKIRLRDGWEKWVWPNAEGGYGVPRYIKLADGEAPADEK 231          
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|570314238|gb|ETO62186.1| (hypothetical protein F444_19883 [Phytophthora parasitica P1976] >gi|570965383|gb|ETP28502.1| hypothetical protein F442_22205 [Phytophthora parasitica P10297])

HSP 1 Score: 103.219 bits (256), Expect = 2.340e-23
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 0
Query:   13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESK 122
            A  A  QIE+YF+ DNL RD +LR H+D +G+VPLA + +F  V S   DY  +++ ++ + +V E DE NE +RL++    W+ PN  GG G PR++K A    P + K
Sbjct:  125 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETV-ELDEQNEKIRLRDGWEKWVWPNAEGGYGVPRYIKLADGEAPADEK 233          
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|675210109|ref|XP_008913939.1| (hypothetical protein PPTG_17732 [Phytophthora parasitica INRA-310] >gi|567947989|gb|ETK73754.1| hypothetical protein L915_19351 [Phytophthora parasitica] >gi|567976673|gb|ETL27191.1| hypothetical protein L916_19240 [Phytophthora parasitica] >gi|568006171|gb|ETL80441.1| hypothetical protein L917_19068 [Phytophthora parasitica] >gi|568036036|gb|ETM33656.1| hypothetical protein L914_19132 [Phytophthora parasitica] >gi|568085861|gb|ETN00762.1| hypothetical protein PPTG_17732 [Phytophthora parasitica INRA-310] >gi|570938013|gb|ETP03270.1| hypothetical protein F441_19754 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 103.219 bits (256), Expect = 2.340e-23
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 0
Query:   13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESK 122
            A  A  QIE+YF+ DNL RD +LR H+D +G+VPLA + +F  V S   DY  +++ ++ + +V E DE NE +RL++    W+ PN  GG G PR++K A    P + K
Sbjct:  125 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETV-ELDEQNEKIRLRDGWEKWVWPNAEGGYGVPRYIKLADGEAPADEK 233          
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|1214691977|gb|OWZ06733.1| (hypothetical protein PHMEG_00020974 [Phytophthora megakarya])

HSP 1 Score: 102.834 bits (255), Expect = 2.516e-23
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 0
Query:   13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQES 121
            A  A  QIE+YF+ DNL RD +LR H+D +G+VPLA + +F  V S   DY  +++ ++ + SV E DE NE +RL+E    W+ PN  GG G PR++K   +T  +++
Sbjct:  118 AEWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKHSDSV-ELDEQNEKIRLREGWQKWVWPNAEGGYGVPRYIKLENETADEKA 225          
The following BLAST results are available for this feature:
BLAST of EWM23888.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105169|gb|EWM23888.1|8.888e-169100.00rna-binding la domain protein [Nannochloropsis gad... [more]
gi|553179012|ref|XP_005852635.1|6.694e-16799.57rna-binding la domain protein, partial [Nannochlor... [more]
gi|299116106|emb|CBN74522.1|1.146e-2744.95conserved unknown protein [Ectocarpus siliculosus][more]
gi|953495223|emb|CEG43130.1|3.218e-2440.54RNA-binding protein LARP/SRO9 and related La domai... [more]
gi|301099353|ref|XP_002898768.1|1.934e-2343.69conserved hypothetical protein [Phytophthora infes... [more]
gi|695418924|ref|XP_009527529.1|1.989e-2345.54hypothetical protein PHYSODRAFT_286082 [Phytophtho... [more]
gi|970656591|gb|KUF94582.1|2.239e-2341.82E3 SUMO-protein ligase RanBP2 [Phytophthora nicoti... [more]
gi|570314238|gb|ETO62186.1|2.340e-2341.82hypothetical protein F444_19883 [Phytophthora para... [more]
gi|675210109|ref|XP_008913939.1|2.340e-2341.82hypothetical protein PPTG_17732 [Phytophthora para... [more]
gi|1214691977|gb|OWZ06733.1|2.516e-2342.20hypothetical protein PHMEG_00020974 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6804rna6804Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications