EWM23888.1, cds6788 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|585105169|gb|EWM23888.1| (rna-binding la domain protein [Nannochloropsis gaditana]) HSP 1 Score: 473.011 bits (1216), Expect = 8.888e-169 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0 Query: 1 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEMGKRSVSVVKDV 231 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEMGKRSVSVVKDV Sbjct: 1 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEMGKRSVSVVKDV 231
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|553179012|ref|XP_005852635.1| (rna-binding la domain protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295897|gb|EKU23196.1| rna-binding la domain protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 470.315 bits (1209), Expect = 6.694e-167 Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0 Query: 1 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEMGKRSVSVVKDV 231 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEM KRSVSVVKDV Sbjct: 48 MTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEGPRQPVTPVTPLCSLSFSSSAYSSSSSTTSPSTSQPESSDDDEDVDRSPSSSSQREVDIQADGNSNTRKGEMEKRSVSVVKDV 278
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|299116106|emb|CBN74522.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 117.857 bits (294), Expect = 1.146e-27 Identity = 49/109 (44.95%), Postives = 75/109 (68.81%), Query Frame = 0 Query: 7 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPN-GRGGMGCPRWLKQAP 114 E + Y+ ++AV+QIE+YF+V+NLCRD ++R+++DEEG++P+A + NFP VA F + +I + AS L+ D NET+R++E WLLPN G G PR++K P Sbjct: 124 EQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGIL-ASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDP 231
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|953495223|emb|CEG43130.1| (RNA-binding protein LARP/SRO9 and related La domain proteins [Plasmopara halstedii]) HSP 1 Score: 105.531 bits (262), Expect = 3.218e-24 Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 0 Query: 13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESKL 123 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S DY +++ ++ S +E DE NE +RL+ W+ PN +GG G PR++KQ P + ++ Sbjct: 126 AQWAKSQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKH-SDTIELDEKNEKIRLRTDWQKWVWPNAKGGYGVPRYIKQTESDSPGDKRM 235
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|301099353|ref|XP_002898768.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262104841|gb|EEY62893.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 103.605 bits (257), Expect = 1.934e-23 Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 0 Query: 13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPD 115 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S DY +++ ++++ +V E DE NE +RL++ W+ PN GG G PR++K A D Sbjct: 124 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKQSETV-ELDEQNEKIRLRQGWQMWVWPNAEGGYGVPRYIKLAED 225
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|695418924|ref|XP_009527529.1| (hypothetical protein PHYSODRAFT_286082 [Phytophthora sojae] >gi|348678654|gb|EGZ18471.1| hypothetical protein PHYSODRAFT_286082 [Phytophthora sojae]) HSP 1 Score: 103.605 bits (257), Expect = 1.989e-23 Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 0 Query: 13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQA 113 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S DY+ +++ +++ S LE DE NE +RL+E W+ PN GG G PR++K A Sbjct: 125 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYASLLEAVKQ-SETLELDEQNEKIRLREGWQKWVWPNAEGGYGVPRYIKVA 224
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|970656591|gb|KUF94582.1| (E3 SUMO-protein ligase RanBP2 [Phytophthora nicotianae]) HSP 1 Score: 103.219 bits (256), Expect = 2.239e-23 Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 0 Query: 13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESK 122 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S DY +++ ++ + +V E DE NE +RL++ W+ PN GG G PR++K A P + K Sbjct: 123 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETV-ELDEQNEKIRLRDGWEKWVWPNAEGGYGVPRYIKLADGEAPADEK 231
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|570314238|gb|ETO62186.1| (hypothetical protein F444_19883 [Phytophthora parasitica P1976] >gi|570965383|gb|ETP28502.1| hypothetical protein F442_22205 [Phytophthora parasitica P10297]) HSP 1 Score: 103.219 bits (256), Expect = 2.340e-23 Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 0 Query: 13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESK 122 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S DY +++ ++ + +V E DE NE +RL++ W+ PN GG G PR++K A P + K Sbjct: 125 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETV-ELDEQNEKIRLRDGWEKWVWPNAEGGYGVPRYIKLADGEAPADEK 233
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|675210109|ref|XP_008913939.1| (hypothetical protein PPTG_17732 [Phytophthora parasitica INRA-310] >gi|567947989|gb|ETK73754.1| hypothetical protein L915_19351 [Phytophthora parasitica] >gi|567976673|gb|ETL27191.1| hypothetical protein L916_19240 [Phytophthora parasitica] >gi|568006171|gb|ETL80441.1| hypothetical protein L917_19068 [Phytophthora parasitica] >gi|568036036|gb|ETM33656.1| hypothetical protein L914_19132 [Phytophthora parasitica] >gi|568085861|gb|ETN00762.1| hypothetical protein PPTG_17732 [Phytophthora parasitica INRA-310] >gi|570938013|gb|ETP03270.1| hypothetical protein F441_19754 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 103.219 bits (256), Expect = 2.340e-23 Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 0 Query: 13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQESK 122 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S DY +++ ++ + +V E DE NE +RL++ W+ PN GG G PR++K A P + K Sbjct: 125 AQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETV-ELDEQNEKIRLRDGWEKWVWPNAEGGYGVPRYIKLADGEAPADEK 233
BLAST of EWM23888.1 vs. NCBI_GenBank
Match: gi|1214691977|gb|OWZ06733.1| (hypothetical protein PHMEG_00020974 [Phytophthora megakarya]) HSP 1 Score: 102.834 bits (255), Expect = 2.516e-23 Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 0 Query: 13 ASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLKQAPDTPPQES 121 A A QIE+YF+ DNL RD +LR H+D +G+VPLA + +F V S DY +++ ++ + SV E DE NE +RL+E W+ PN GG G PR++K +T +++ Sbjct: 118 AEWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKHSDSV-ELDEQNEKIRLREGWQKWVWPNAEGGYGVPRYIKLENETADEKA 225 The following BLAST results are available for this feature:
BLAST of EWM23888.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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