EWM23887.1, cds6781 (CDS) Nannochloropsis gaditana

Overview
NameEWM23887.1
Unique Namecds6781
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:525501..525812 +
Alignment locationCM002469.1:526003..526148 +
Alignment locationCM002469.1:526430..526570 +
Alignment locationCM002469.1:526684..526901 +
Alignment locationCM002469.1:527039..527098 +
Alignment locationCM002469.1:527163..527482 +
Alignment locationCM002469.1:527832..528494 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23887.1
Productsulfate large subunit
Orig transcript idgnl|cribi|Naga_100161g2.9656.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:525501..525812 +
CM002469.1supercontigCM002469.1:526003..526148 +
CM002469.1supercontigCM002469.1:526430..526570 +
CM002469.1supercontigCM002469.1:526684..526901 +
CM002469.1supercontigCM002469.1:527039..527098 +
CM002469.1supercontigCM002469.1:527163..527482 +
CM002469.1supercontigCM002469.1:527832..528494 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018638DUF2061_membrane
Homology
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|585105168|gb|EWM23887.1| (sulfate large subunit [Nannochloropsis gaditana])

HSP 1 Score: 1291.56 bits (3341), Expect = 0.000e+0
Identity = 619/619 (100.00%), Postives = 619/619 (100.00%), Query Frame = 0
Query:    1 MRAAMPSILSLRFVYSCMVITTVKALPMPRTAFHVPAVSSSLSSMAEQGLSFGQSHPPVFPRAGSRPSLTKAAQHHENFQAQRFAWNGLFRRPGPVRSSPTRPMLASLTPEQEVKNYQIRRQVEDLDELIRTKTDAKRAIEKEVEGLLAQKRSLQMEVNTMAPSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIHTERCFAGMWMSQILAEKGGRAIMLKKGAQGRRTEGKRITRSGLLAYTRRMRRGDGAKEGHAEPAYERQRTKQAKERLMTADGPLQGMRISHNMQVPKPAQVINRGDGGVVHLRSAFGDVFDIEVNEKVSLLQIRHELAALLPHVGPIYFHQDDQFLTDESHIDPERAVDFTYPLSGGGTTLEVVKTIPEMLRLHILCWKAGCQQVGNLQDSVWCENTFCCLFHRCGTQNILKEQQLACVKVSLTPPGCGCDTTMPACLQAKCLCWNCGLKSMPDLQKDDWVTDSVLCVYSNCGPKDCASPQILCFKCNC 619
            MRAAMPSILSLRFVYSCMVITTVKALPMPRTAFHVPAVSSSLSSMAEQGLSFGQSHPPVFPRAGSRPSLTKAAQHHENFQAQRFAWNGLFRRPGPVRSSPTRPMLASLTPEQEVKNYQIRRQVEDLDELIRTKTDAKRAIEKEVEGLLAQKRSLQMEVNTMAPSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIHTERCFAGMWMSQILAEKGGRAIMLKKGAQGRRTEGKRITRSGLLAYTRRMRRGDGAKEGHAEPAYERQRTKQAKERLMTADGPLQGMRISHNMQVPKPAQVINRGDGGVVHLRSAFGDVFDIEVNEKVSLLQIRHELAALLPHVGPIYFHQDDQFLTDESHIDPERAVDFTYPLSGGGTTLEVVKTIPEMLRLHILCWKAGCQQVGNLQDSVWCENTFCCLFHRCGTQNILKEQQLACVKVSLTPPGCGCDTTMPACLQAKCLCWNCGLKSMPDLQKDDWVTDSVLCVYSNCGPKDCASPQILCFKCNC
Sbjct:    1 MRAAMPSILSLRFVYSCMVITTVKALPMPRTAFHVPAVSSSLSSMAEQGLSFGQSHPPVFPRAGSRPSLTKAAQHHENFQAQRFAWNGLFRRPGPVRSSPTRPMLASLTPEQEVKNYQIRRQVEDLDELIRTKTDAKRAIEKEVEGLLAQKRSLQMEVNTMAPSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIHTERCFAGMWMSQILAEKGGRAIMLKKGAQGRRTEGKRITRSGLLAYTRRMRRGDGAKEGHAEPAYERQRTKQAKERLMTADGPLQGMRISHNMQVPKPAQVINRGDGGVVHLRSAFGDVFDIEVNEKVSLLQIRHELAALLPHVGPIYFHQDDQFLTDESHIDPERAVDFTYPLSGGGTTLEVVKTIPEMLRLHILCWKAGCQQVGNLQDSVWCENTFCCLFHRCGTQNILKEQQLACVKVSLTPPGCGCDTTMPACLQAKCLCWNCGLKSMPDLQKDDWVTDSVLCVYSNCGPKDCASPQILCFKCNC 619          
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|299116902|emb|CBN75012.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 135.576 bits (340), Expect = 2.281e-32
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0
Query:  163 PSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERC 294
            P+L +  ES  RS VKA  WRL A ++TL + L FS     A SIV SDF++K+G M+ GERLWNKV WG++ K+GD+  RS+ KA  WR FA  NTLI  +F AK + VA +IA TDT+ KT+L+ ++ER 
Sbjct:  114 PAL-VYGESATRSFVKALVWRLTAGVVTLVSGLVFSGSLATAMSIVGSDFVTKSGFMFAGERLWNKVKWGQD-KSGDSTKRSLAKAVLWRVFAASNTLICGVFLAKDLSVASKIAGTDTVFKTALFFLNERA 243          
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|1072225360|gb|OEU10107.1| (hypothetical protein FRACYDRAFT_220344 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 130.568 bits (327), Expect = 1.740e-31
Identity = 71/138 (51.45%), Postives = 91/138 (65.94%), Query Frame = 0
Query:  169 SESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNE 306
            SE+  RS VKA  WR++A  +T  TSL FS   K A +IV SDFLSKA TM++GERL NK + G+E+ A D A RS+MKA  WR FA+ NTL ++IF AK + +A +IA +D I KT L  V+ER     A +E G E
Sbjct:   45 SETTARSAVKALMWRVIAGSVTFITSLRFSGSMKTALTIVGSDFLSKAFTMFIGERLMNKSNAGRESGA-DGAGRSLMKALVWRLFAICNTLTMAIFIAKDITMASKIAGSDAIFKTGLMFVYERV---WAKIEWGKE 178          

HSP 2 Score: 67.0106 bits (162), Expect = 3.857e-9
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0
Query:  166 EIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKE 234
            E  ++   RSL+KA  WRL A   TL+ ++F ++D  MA+ I  SD + K G M++ ER+W K+ WGKE
Sbjct:  110 ESGADGAGRSLMKALVWRLFAICNTLTMAIFIAKDITMASKIAGSDAIFKTGLMFVYERVWAKIEWGKE 178          
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|1210531951|dbj|GAX09379.1| (hypothetical protein FisN_6Lh247 [Fistulifera solaris])

HSP 1 Score: 121.709 bits (304), Expect = 1.382e-27
Identity = 66/142 (46.48%), Postives = 92/142 (64.79%), Query Frame = 0
Query:  169 SESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIH 310
            SE+ LRS+VK+  WR+VA  +T  T+L FS   + A  +V+SDF SK+ TM++GERL NK   G++ K  D A RS+ KA  WR FA+VNTL ++IF +  + +AG+IASTD + KT+L   +ER     A VE G E  + 
Sbjct:  109 SETALRSVVKSFCWRIVAGSVTFITTLQFSGSLQTALKVVASDFFSKSVTMFIGERLMNKSQVGRK-KGSDDAGRSLAKALIWRLFAIVNTLAVAIFVSHDLSIAGKIASTDAVFKTALMYFYERV---WARVEWGKEYIVE 246          
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|1210519003|dbj|GAX22001.1| (hypothetical protein FisN_6Hh247 [Fistulifera solaris])

HSP 1 Score: 121.709 bits (304), Expect = 1.395e-27
Identity = 66/142 (46.48%), Postives = 92/142 (64.79%), Query Frame = 0
Query:  169 SESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIH 310
            SE+ LRS+VK+  WR+VA  +T  T+L FS   + A  +V+SDF SK+ TM++GERL NK   G++ K  D A RS+ KA  WR FA+VNTL ++IF +  + +AG+IASTD + KT+L   +ER     A VE G E  + 
Sbjct:  111 SETALRSVVKSFCWRIVAGSVTFITTLQFSGSLQTALKVVASDFFSKSVTMFIGERLMNKSQVGRK-KGSDDAGRSLAKALIWRLFAIVNTLAVAIFVSHDLSIAGKIASTDAVFKTALMYFYERV---WARVEWGKEYIVE 248          
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|219112281|ref|XP_002177892.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410777|gb|EEC50706.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 120.168 bits (300), Expect = 4.707e-27
Identity = 83/212 (39.15%), Postives = 119/212 (56.13%), Query Frame = 0
Query:   92 RPGPV-RSSPTRPMLASLTPEQEVKNYQIRRQVEDLD-ELIRTKTDAKRAIE---KEVEGLLAQKRSL----QMEVNTMAPSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERC 294
            R  PV R + TR M  S     +  +  + +Q E  + +L++ K +A   +E   K +E L +QK       Q+   + A S    SE+ LRS VKA  WR++A  IT +T+L FS   K A  +V+ DF SKA TM++GERL NK   G++ K  D   RS  KA  WR FA+ NTL +++F +K + VA +IASTD + KT+L   +ER 
Sbjct:   27 RTLPVARLANTRSM--STAAISDSNDETVLKQFEKKELQLLKRKQEALAKLEEYTKTLENLQSQKAEYLAAGQVADASAAGSF---SETALRSAVKAFLWRIIAGSITFATTLQFSGSVKTAMQVVAGDFFSKAFTMFIGERLMNKSQAGRK-KGADDVGRSFAKALIWRLFAICNTLTMAVFISKDLSVASKIASTDAVFKTALMFFYERV 232          
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|397613460|gb|EJK62229.1| (hypothetical protein THAOC_17166 [Thalassiosira oceanica])

HSP 1 Score: 119.398 bits (298), Expect = 9.486e-27
Identity = 76/195 (38.97%), Postives = 105/195 (53.85%), Query Frame = 0
Query:  118 QIRRQVEDLDELIRTKTDAKRAIEKEVEGLLAQKRSLQMEVNTMAPSLEIA--SESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIH 310
            +I++   + +   R   +A+  IEK         R   +   ++    E A  SE+  RSLVK+  WR++A  +T  TSL FS +   A SIV SDF SKA TM++GERL NK   G++  A D   RS+ KA  WR FA+ NTL +S F AK + +A +IA +D I KT L   +ER   K   +E G E  I 
Sbjct:   64 KIQKYESEQERFARKAAEAQSQIEK-----FKASRQKYLNGGSIGGDTEAANFSETTQRSLVKSMMWRVIAGSVTFFTSLRFSGNISTALSIVGSDFFSKAATMFVGERLMNKSQAGRKGGADDLG-RSLAKALLWRLFAIANTLTMSYFIAKDLSMASKIAGSDAIFKTGLMFAYERVWAK---IEWGKEYIIE 249          
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|224003085|ref|XP_002291214.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972990|gb|EED91321.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 124.405 bits (311), Expect = 6.428e-26
Identity = 83/201 (41.29%), Postives = 117/201 (58.21%), Query Frame = 0
Query:  111 EQEVKNYQIRRQVEDLDELIRTKTDAKRAIEKEVEGLLAQKRSLQMEVNTMAPSLEIA--SESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCI 309
            +Q+++NY+ ++Q + LD+L      A+  +EK  E    ++R LQ +  +M    E A  +E+  RSLVK+  WR++A  +T  TSL FS     A SIV SDF SKA TM++GERL NK   G++  A D   RS+ KA  WR FA+ NTL +S   AK+ K+A +IA +D I KT L   +ER     A +E G E  I
Sbjct:  792 DQKIQNYE-KKQQKYLDKL----NSAQAELEKFKE---TKQRYLQGD--SMGGEGESAAFTETTARSLVKSMMWRVIAGSVTFFTSLRFSGSMSTALSIVGSDFFSKAATMFIGERLMNKSQAGRKGGADDVG-RSLAKALLWRLFAICNTLTMSFLIAKNFKMASKIAGSDAIFKTGLMFFYERA---WAKIEWGKEYII 978          
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|1083459648|gb|OGF63439.1| (hypothetical protein A2Y62_07325 [Candidatus Fischerbacteria bacterium RBG_13_37_8])

HSP 1 Score: 82.8037 bits (203), Expect = 5.297e-15
Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 0
Query:  170 ESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHER 293
            +S  RSLVK  SWR++A + T   + FF  +  +A  I  ++  SK    YL ER W+ +SWG+E+    +  RSI K   WR    ++T+IIS  ++ ++  +  +  T+   K S + +HER
Sbjct:    3 DSKKRSLVKGLSWRILATMDTFFIAYFFFGEIHLALPIAITEVFSKILLYYLHERGWDNISWGRESHM-PSHLRSIAKGATWRFIGSLDTIIISFAYSGNMSASFSVGLTEVATKISFFYIHER 125          
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|730546323|ref|WP_034043193.1| (DUF2061 domain-containing protein [Flaviramulus ichthyoenteri])

HSP 1 Score: 75.8702 bits (185), Expect = 2.013e-13
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 0
Query:  170 ESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGK 233
            E P+RS+ KA SWR+V  L TL+ S F ++D K+AASI S DF++K    +  ER+WN V WGK
Sbjct:   22 EKPIRSVAKALSWRVVGTLDTLAVSFFLAQDIKLAASIASVDFITKLVLYFFHERVWNVVKWGK 85          

HSP 2 Score: 59.6918 bits (143), Expect = 1.025e-7
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 0
Query:  233 KEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHER 293
            KE   G+   RS+ KA +WR    ++TL +S F A+ +K+A  IAS D I K  LY  HER
Sbjct:   16 KEDSVGEKPIRSVAKALSWRVVGTLDTLAVSFFLAQDIKLAASIASVDFITKLVLYFFHER 76          
The following BLAST results are available for this feature:
BLAST of EWM23887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105168|gb|EWM23887.1|0.000e+0100.00sulfate large subunit [Nannochloropsis gaditana][more]
gi|299116902|emb|CBN75012.1|2.281e-3251.52conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072225360|gb|OEU10107.1|1.740e-3151.45hypothetical protein FRACYDRAFT_220344 [Fragilario... [more]
gi|1210531951|dbj|GAX09379.1|1.382e-2746.48hypothetical protein FisN_6Lh247 [Fistulifera sola... [more]
gi|1210519003|dbj|GAX22001.1|1.395e-2746.48hypothetical protein FisN_6Hh247 [Fistulifera sola... [more]
gi|219112281|ref|XP_002177892.1|4.707e-2739.15predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397613460|gb|EJK62229.1|9.486e-2738.97hypothetical protein THAOC_17166 [Thalassiosira oc... [more]
gi|224003085|ref|XP_002291214.1|6.428e-2641.29predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1083459648|gb|OGF63439.1|5.297e-1533.87hypothetical protein A2Y62_07325 [Candidatus Fisch... [more]
gi|730546323|ref|WP_034043193.1|2.013e-1351.56DUF2061 domain-containing protein [Flaviramulus ic... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6797rna6797Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications