EWM23887.1, cds6781 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|585105168|gb|EWM23887.1| (sulfate large subunit [Nannochloropsis gaditana]) HSP 1 Score: 1291.56 bits (3341), Expect = 0.000e+0 Identity = 619/619 (100.00%), Postives = 619/619 (100.00%), Query Frame = 0
Query: 1 MRAAMPSILSLRFVYSCMVITTVKALPMPRTAFHVPAVSSSLSSMAEQGLSFGQSHPPVFPRAGSRPSLTKAAQHHENFQAQRFAWNGLFRRPGPVRSSPTRPMLASLTPEQEVKNYQIRRQVEDLDELIRTKTDAKRAIEKEVEGLLAQKRSLQMEVNTMAPSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIHTERCFAGMWMSQILAEKGGRAIMLKKGAQGRRTEGKRITRSGLLAYTRRMRRGDGAKEGHAEPAYERQRTKQAKERLMTADGPLQGMRISHNMQVPKPAQVINRGDGGVVHLRSAFGDVFDIEVNEKVSLLQIRHELAALLPHVGPIYFHQDDQFLTDESHIDPERAVDFTYPLSGGGTTLEVVKTIPEMLRLHILCWKAGCQQVGNLQDSVWCENTFCCLFHRCGTQNILKEQQLACVKVSLTPPGCGCDTTMPACLQAKCLCWNCGLKSMPDLQKDDWVTDSVLCVYSNCGPKDCASPQILCFKCNC 619
MRAAMPSILSLRFVYSCMVITTVKALPMPRTAFHVPAVSSSLSSMAEQGLSFGQSHPPVFPRAGSRPSLTKAAQHHENFQAQRFAWNGLFRRPGPVRSSPTRPMLASLTPEQEVKNYQIRRQVEDLDELIRTKTDAKRAIEKEVEGLLAQKRSLQMEVNTMAPSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIHTERCFAGMWMSQILAEKGGRAIMLKKGAQGRRTEGKRITRSGLLAYTRRMRRGDGAKEGHAEPAYERQRTKQAKERLMTADGPLQGMRISHNMQVPKPAQVINRGDGGVVHLRSAFGDVFDIEVNEKVSLLQIRHELAALLPHVGPIYFHQDDQFLTDESHIDPERAVDFTYPLSGGGTTLEVVKTIPEMLRLHILCWKAGCQQVGNLQDSVWCENTFCCLFHRCGTQNILKEQQLACVKVSLTPPGCGCDTTMPACLQAKCLCWNCGLKSMPDLQKDDWVTDSVLCVYSNCGPKDCASPQILCFKCNC
Sbjct: 1 MRAAMPSILSLRFVYSCMVITTVKALPMPRTAFHVPAVSSSLSSMAEQGLSFGQSHPPVFPRAGSRPSLTKAAQHHENFQAQRFAWNGLFRRPGPVRSSPTRPMLASLTPEQEVKNYQIRRQVEDLDELIRTKTDAKRAIEKEVEGLLAQKRSLQMEVNTMAPSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIHTERCFAGMWMSQILAEKGGRAIMLKKGAQGRRTEGKRITRSGLLAYTRRMRRGDGAKEGHAEPAYERQRTKQAKERLMTADGPLQGMRISHNMQVPKPAQVINRGDGGVVHLRSAFGDVFDIEVNEKVSLLQIRHELAALLPHVGPIYFHQDDQFLTDESHIDPERAVDFTYPLSGGGTTLEVVKTIPEMLRLHILCWKAGCQQVGNLQDSVWCENTFCCLFHRCGTQNILKEQQLACVKVSLTPPGCGCDTTMPACLQAKCLCWNCGLKSMPDLQKDDWVTDSVLCVYSNCGPKDCASPQILCFKCNC 619
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|299116902|emb|CBN75012.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 135.576 bits (340), Expect = 2.281e-32 Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0
Query: 163 PSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERC 294
P+L + ES RS VKA WRL A ++TL + L FS A SIV SDF++K+G M+ GERLWNKV WG++ K+GD+ RS+ KA WR FA NTLI +F AK + VA +IA TDT+ KT+L+ ++ER
Sbjct: 114 PAL-VYGESATRSFVKALVWRLTAGVVTLVSGLVFSGSLATAMSIVGSDFVTKSGFMFAGERLWNKVKWGQD-KSGDSTKRSLAKAVLWRVFAASNTLICGVFLAKDLSVASKIAGTDTVFKTALFFLNERA 243
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|1072225360|gb|OEU10107.1| (hypothetical protein FRACYDRAFT_220344 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 130.568 bits (327), Expect = 1.740e-31 Identity = 71/138 (51.45%), Postives = 91/138 (65.94%), Query Frame = 0
Query: 169 SESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNE 306
SE+ RS VKA WR++A +T TSL FS K A +IV SDFLSKA TM++GERL NK + G+E+ A D A RS+MKA WR FA+ NTL ++IF AK + +A +IA +D I KT L V+ER A +E G E
Sbjct: 45 SETTARSAVKALMWRVIAGSVTFITSLRFSGSMKTALTIVGSDFLSKAFTMFIGERLMNKSNAGRESGA-DGAGRSLMKALVWRLFAICNTLTMAIFIAKDITMASKIAGSDAIFKTGLMFVYERV---WAKIEWGKE 178 HSP 2 Score: 67.0106 bits (162), Expect = 3.857e-9 Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0
Query: 166 EIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKE 234
E ++ RSL+KA WRL A TL+ ++F ++D MA+ I SD + K G M++ ER+W K+ WGKE
Sbjct: 110 ESGADGAGRSLMKALVWRLFAICNTLTMAIFIAKDITMASKIAGSDAIFKTGLMFVYERVWAKIEWGKE 178
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|1210531951|dbj|GAX09379.1| (hypothetical protein FisN_6Lh247 [Fistulifera solaris]) HSP 1 Score: 121.709 bits (304), Expect = 1.382e-27 Identity = 66/142 (46.48%), Postives = 92/142 (64.79%), Query Frame = 0
Query: 169 SESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIH 310
SE+ LRS+VK+ WR+VA +T T+L FS + A +V+SDF SK+ TM++GERL NK G++ K D A RS+ KA WR FA+VNTL ++IF + + +AG+IASTD + KT+L +ER A VE G E +
Sbjct: 109 SETALRSVVKSFCWRIVAGSVTFITTLQFSGSLQTALKVVASDFFSKSVTMFIGERLMNKSQVGRK-KGSDDAGRSLAKALIWRLFAIVNTLAVAIFVSHDLSIAGKIASTDAVFKTALMYFYERV---WARVEWGKEYIVE 246
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|1210519003|dbj|GAX22001.1| (hypothetical protein FisN_6Hh247 [Fistulifera solaris]) HSP 1 Score: 121.709 bits (304), Expect = 1.395e-27 Identity = 66/142 (46.48%), Postives = 92/142 (64.79%), Query Frame = 0
Query: 169 SESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIH 310
SE+ LRS+VK+ WR+VA +T T+L FS + A +V+SDF SK+ TM++GERL NK G++ K D A RS+ KA WR FA+VNTL ++IF + + +AG+IASTD + KT+L +ER A VE G E +
Sbjct: 111 SETALRSVVKSFCWRIVAGSVTFITTLQFSGSLQTALKVVASDFFSKSVTMFIGERLMNKSQVGRK-KGSDDAGRSLAKALIWRLFAIVNTLAVAIFVSHDLSIAGKIASTDAVFKTALMYFYERV---WARVEWGKEYIVE 248
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|219112281|ref|XP_002177892.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410777|gb|EEC50706.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 120.168 bits (300), Expect = 4.707e-27 Identity = 83/212 (39.15%), Postives = 119/212 (56.13%), Query Frame = 0
Query: 92 RPGPV-RSSPTRPMLASLTPEQEVKNYQIRRQVEDLD-ELIRTKTDAKRAIE---KEVEGLLAQKRSL----QMEVNTMAPSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERC 294
R PV R + TR M S + + + +Q E + +L++ K +A +E K +E L +QK Q+ + A S SE+ LRS VKA WR++A IT +T+L FS K A +V+ DF SKA TM++GERL NK G++ K D RS KA WR FA+ NTL +++F +K + VA +IASTD + KT+L +ER
Sbjct: 27 RTLPVARLANTRSM--STAAISDSNDETVLKQFEKKELQLLKRKQEALAKLEEYTKTLENLQSQKAEYLAAGQVADASAAGSF---SETALRSAVKAFLWRIIAGSITFATTLQFSGSVKTAMQVVAGDFFSKAFTMFIGERLMNKSQAGRK-KGADDVGRSFAKALIWRLFAICNTLTMAVFISKDLSVASKIASTDAVFKTALMFFYERV 232
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|397613460|gb|EJK62229.1| (hypothetical protein THAOC_17166 [Thalassiosira oceanica]) HSP 1 Score: 119.398 bits (298), Expect = 9.486e-27 Identity = 76/195 (38.97%), Postives = 105/195 (53.85%), Query Frame = 0
Query: 118 QIRRQVEDLDELIRTKTDAKRAIEKEVEGLLAQKRSLQMEVNTMAPSLEIA--SESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCIH 310
+I++ + + R +A+ IEK R + ++ E A SE+ RSLVK+ WR++A +T TSL FS + A SIV SDF SKA TM++GERL NK G++ A D RS+ KA WR FA+ NTL +S F AK + +A +IA +D I KT L +ER K +E G E I
Sbjct: 64 KIQKYESEQERFARKAAEAQSQIEK-----FKASRQKYLNGGSIGGDTEAANFSETTQRSLVKSMMWRVIAGSVTFFTSLRFSGNISTALSIVGSDFFSKAATMFVGERLMNKSQAGRKGGADDLG-RSLAKALLWRLFAIANTLTMSYFIAKDLSMASKIAGSDAIFKTGLMFAYERVWAK---IEWGKEYIIE 249
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|224003085|ref|XP_002291214.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972990|gb|EED91321.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 124.405 bits (311), Expect = 6.428e-26 Identity = 83/201 (41.29%), Postives = 117/201 (58.21%), Query Frame = 0
Query: 111 EQEVKNYQIRRQVEDLDELIRTKTDAKRAIEKEVEGLLAQKRSLQMEVNTMAPSLEIA--SESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERCPLKGATVEGGNEQCI 309
+Q+++NY+ ++Q + LD+L A+ +EK E ++R LQ + +M E A +E+ RSLVK+ WR++A +T TSL FS A SIV SDF SKA TM++GERL NK G++ A D RS+ KA WR FA+ NTL +S AK+ K+A +IA +D I KT L +ER A +E G E I
Sbjct: 792 DQKIQNYE-KKQQKYLDKL----NSAQAELEKFKE---TKQRYLQGD--SMGGEGESAAFTETTARSLVKSMMWRVIAGSVTFFTSLRFSGSMSTALSIVGSDFFSKAATMFIGERLMNKSQAGRKGGADDVG-RSLAKALLWRLFAICNTLTMSFLIAKNFKMASKIAGSDAIFKTGLMFFYERA---WAKIEWGKEYII 978
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|1083459648|gb|OGF63439.1| (hypothetical protein A2Y62_07325 [Candidatus Fischerbacteria bacterium RBG_13_37_8]) HSP 1 Score: 82.8037 bits (203), Expect = 5.297e-15 Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 0
Query: 170 ESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHER 293
+S RSLVK SWR++A + T + FF + +A I ++ SK YL ER W+ +SWG+E+ + RSI K WR ++T+IIS ++ ++ + + T+ K S + +HER
Sbjct: 3 DSKKRSLVKGLSWRILATMDTFFIAYFFFGEIHLALPIAITEVFSKILLYYLHERGWDNISWGRESHM-PSHLRSIAKGATWRFIGSLDTIIISFAYSGNMSASFSVGLTEVATKISFFYIHER 125
BLAST of EWM23887.1 vs. NCBI_GenBank
Match: gi|730546323|ref|WP_034043193.1| (DUF2061 domain-containing protein [Flaviramulus ichthyoenteri]) HSP 1 Score: 75.8702 bits (185), Expect = 2.013e-13 Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 0
Query: 170 ESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGK 233
E P+RS+ KA SWR+V L TL+ S F ++D K+AASI S DF++K + ER+WN V WGK
Sbjct: 22 EKPIRSVAKALSWRVVGTLDTLAVSFFLAQDIKLAASIASVDFITKLVLYFFHERVWNVVKWGK 85 HSP 2 Score: 59.6918 bits (143), Expect = 1.025e-7 Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 0
Query: 233 KEAKAGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHER 293
KE G+ RS+ KA +WR ++TL +S F A+ +K+A IAS D I K LY HER
Sbjct: 16 KEDSVGEKPIRSVAKALSWRVVGTLDTLAVSFFLAQDIKLAASIASVDFITKLVLYFFHER 76 The following BLAST results are available for this feature:
BLAST of EWM23887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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