EWM23962.1, cds6717 (CDS) Nannochloropsis gaditana

Overview
NameEWM23962.1
Unique Namecds6717
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:374183..375118 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23962.1
Productproteasome a type
Orig transcript idgnl|cribi|Naga_100027g40.140.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:374183..375118 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005839proteasome core complex
GO:0019773proteasome core complex, alpha-subunit complex
Vocabulary: INTERPRO
TermDefinition
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
IPR000426Proteasome_asu_N
Homology
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|585105248|gb|EWM23962.1| (proteasome a type [Nannochloropsis gaditana])

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0
Query:    1 MRPTLLPLLAIAALRLPTSLFASLTAPSGAPSIAPSVFYDAFSTRIYDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSLFVSWDPWSRRMKVSIPKALAQRFERQE 311
            MRPTLLPLLAIAALRLPTSLFASLTAPSGAPSIAPSVFYDAFSTRIYDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSLFVSWDPWSRRMKVSIPKALAQRFERQE
Sbjct:    1 MRPTLLPLLAIAALRLPTSLFASLTAPSGAPSIAPSVFYDAFSTRIYDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSLFVSWDPWSRRMKVSIPKALAQRFERQE 311          
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|294883434|ref|XP_002770938.1| (proteasome A type subunit, putative [Perkinsus marinus ATCC 50983] >gi|239874064|gb|EER02754.1| proteasome A type subunit, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 115.161 bits (287), Expect = 9.881e-27
Identity = 74/239 (30.96%), Postives = 124/239 (51.88%), Query Frame = 0
Query:   47 YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHD-TERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSL 284
            + P+GR+ Q+EYA+EA ++G AVV        IL ++  R S   + + +Q+   ++  D +I +A +GL  D   +    R+EC +H++ +D+P+ VGRL N +  E  + T+     PY V LLVAGYD          P +++  P+G I  + A A+G  +++A  YL    +     +  D K L  H    L+AL +++         Q+      E+ SIA+VG++LP+  L
Sbjct:   13 WSPQGRIFQIEYAMEAVKQGTAVVALRGKKHAILCAFRRRQS--DLASYQQK---IFRIDDHIGVAISGLTADARVICSFMRDECLSHKFTYDTPMSVGRLVNKIGVESQEKTQVASKRPYGVGLLVAGYD-------ENGPHIYETCPSGNIFEYYAMAIGGRSQSARTYLENNYEG--FDNSEDQKELLMHG---LKALAKTL---------QDEAKLTTENCSIAIVGEDLPFKEL 225          
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|294914356|ref|XP_002778255.1| (proteasome A type subunit, putative [Perkinsus marinus ATCC 50983] >gi|239886458|gb|EER10050.1| proteasome A type subunit, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 114.005 bits (284), Expect = 2.399e-26
Identity = 76/241 (31.54%), Postives = 125/241 (51.87%), Query Frame = 0
Query:   47 YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHD-TERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGN--DGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSL 284
            + P+GR+ Q+EYA+EA ++G AVV        IL ++  R S   + + +Q+   ++  D +I +A +GL  D   +    R+EC +H++ +D+P+ VGRL N +  E  + T+     PY V LLVAGYD          P +++  P+G I  + A A+G  +++A  YL    +    G  N  D K L  H    L+AL +++         Q+      E+ SIA+VG++LP+  L
Sbjct:   13 WSPQGRIFQIEYAMEAVKQGTAVVALRGKKHAILCAFRRRQS--DLASYQQK---IFRIDDHIGVAISGLTADARVICSFMRDECLSHKFTYDTPMSVGRLVNKIGVESQEKTQVASKRPYGVGLLVAGYD-------ENGPHIYETCPSGNIFEYYAMAIGGRSQSARTYLENNYE----GFENIEDQKELLMHG---LKALAKTL---------QDDAKLTTENCSIAIVGEDLPFKEL 225          
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|955176483|emb|CUG06205.1| (proteasome alpha 1 subunit, putative [Bodo saltans])

HSP 1 Score: 114.005 bits (284), Expect = 3.481e-26
Identity = 86/251 (34.26%), Postives = 131/251 (52.19%), Query Frame = 0
Query:   37 VFYDAFSTRI--YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERH----RILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPY 281
            +F + + T I  + P GR+ Q+EYA+EA  +G A VGA + DFV+LA+ + RS   ++ + +++   L   D ++ +A TGL  D   LA   R E   HRY+ DS + V R+  LL  E H  +RH       PY V LL+ GYD       R  P LF+ +P+G +  F+A A+G  ++AA  YL +  Q           +L E   +VL AL R++     G +  E       + +IA+VGK+ P+
Sbjct:    1 MFRNQYDTDITTWSPAGRLYQVEYAMEAVNQGSAAVGAKNKDFVVLAA-LKRSPNAELSSFQEKVFKL---DDHMGMAITGLVADGRKLARFIRTEANNHRYMQDSSIPVNRIAELLG-EKH--QRHIQSAAYRPYGVGLLIGGYD-------RQGPHLFQTSPSGDVYDFKATAMGVRSQAARTYLEKHFQ------SFPDTTLDE---LVLHAL-RAL-----GSTAPEGVELNIRNTTIAIVGKDTPF 222          
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|290998333|ref|XP_002681735.1| (20S proteosome alpha subunit [Naegleria gruberi] >gi|284095360|gb|EFC48991.1| 20S proteosome alpha subunit [Naegleria gruberi])

HSP 1 Score: 110.923 bits (276), Expect = 1.565e-25
Identity = 80/246 (32.52%), Postives = 137/246 (55.69%), Query Frame = 0
Query:   37 VFYDAFSTRI--YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERHRI-LPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNL 279
            +F + + T I  + P+GR+ Q+EYA+EA ++G A VG  S DFV+LA+ + R+   ++ + +++   L+  D +I +A  GLA D   L+   RNEC +H+Y+ ++P+ V RL + +A +   + +     P+ V LLV GY   D+TG      L++  P+G + S++A A+G  +++A  Y  +          ND K L  HA   L+AL +  TG++   + +        + S+AVVGK+L
Sbjct:    1 MFRNQYDTDITTWSPQGRLHQVEYAMEAVQQGSAAVGLKSKDFVVLAT-LKRAPHAELSSYQKK---LFKIDDHIGIAIAGLAADGRVLSKYMRNECMSHQYVFETPVPVQRLASKIADKSQKSTQSSSGRPFGVGLLVGGY---DETGAH----LYQTCPSGNLYSYKAIAIGARSQSAKTYFEKHYDTFT----NDWKDLIVHA---LKAL-KGTTGDNVELTTK--------NCSVAVVGKDL 219          
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|302831556|ref|XP_002947343.1| (20S proteasome alpha subunit F [Volvox carteri f. nagariensis] >gi|300267207|gb|EFJ51391.1| 20S proteasome alpha subunit F [Volvox carteri f. nagariensis])

HSP 1 Score: 112.079 bits (279), Expect = 2.286e-25
Identity = 79/251 (31.47%), Postives = 131/251 (52.19%), Query Frame = 0
Query:   37 VFYDAFSTRI--YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIH-DTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSL 284
            +F + + T +  + P+GR+ Q+EYA+EA ++G   VG  S   V+LA+   + S+ ++ + +++   +   D ++ +A  GL  D  +L    RNEC  HRY+++S + VGRL  L+A +    T+R    PY V LLVAG D +        P L+   P+G    ++A A+G  ++AA  YL +  +      G +   L +H+   LQA            S+ E E   + + S+AVVGK+L +T L
Sbjct:    1 MFRNQYDTDVTTWSPQGRLFQVEYAMEAVKQGSCTVGLKSDTHVVLATL--KRSQSELSSFQRKVFKI---DDHLGIAIAGLTGDGRSLCKYMRNECINHRYVYESSMPVGRLVRLVADKAQVCTQRSWKRPYGVGLLVAGVDSQG-------PHLYSTCPSGNYYEYKAMAIGSRSQAAKTYLEKHFETF---PGANLDELVQHSLRALQA------------SLSEGE-LTDANCSVAVVGKDLSFTVL 223          
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|294949392|ref|XP_002786174.1| (proteasome A type subunit, putative [Perkinsus marinus ATCC 50983] >gi|239900331|gb|EER17970.1| proteasome A type subunit, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 110.923 bits (276), Expect = 2.834e-25
Identity = 73/239 (30.54%), Postives = 123/239 (51.46%), Query Frame = 0
Query:   47 YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHD-TERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSL 284
            + P+GR+ Q+EYA+EA ++G AVV        IL ++  R S   + + +Q+   ++  D +I +A +GL  D   +    R+EC +H++ +D+P+ VGRL N +  E  + T+     PY V LLVAGYD          P +++  P+G I  + A A+G  +++A  YL    +     +  D K+L  H    L+AL +++         Q+      E+ SIA+VG+  P+  L
Sbjct:   13 WSPQGRIFQIEYAMEAVKQGTAVVALRGEKHAILCAFRRRQS--DLASYQQK---IFRIDDHIGVAISGLTADARVICSFMRDECLSHKFTYDTPMSVGRLVNKIGVESQEKTQVASKRPYGVGLLVAGYD-------ENGPHIYETCPSGNIFEYYAMAIGGRSQSARTYLENNYES--FDNIEDQKALLMHG---LKALAKTL---------QDDAKLTTENCSIAIVGEEQPFKEL 225          
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|452769093|gb|AGG11495.1| (hypothetical protein, partial [Trypanosomatidae sp. TS-2013])

HSP 1 Score: 110.923 bits (276), Expect = 3.635e-25
Identity = 81/237 (34.18%), Postives = 125/237 (52.74%), Query Frame = 0
Query:   47 YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLA-KEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYT 282
            + P GR+ Q+EYA EA   G A VG  + ++V++A+ + RS   ++ + +++   L   D+N+ ++ TGL  D   LA   R EC  +RY+HDS L + RL + LA K    T+     P+ V LL+ GY   D TG    P LF+ AP+G I  ++A A+G  ++AA  YL +        D     SL E  T  L+AL    T E    +++        + +IA+VGK+ P+T
Sbjct:   13 WSPTGRLFQVEYANEAVNNGSAAVGVKNKEYVVIAA-LKRSPTAELSSYQEKVFVL---DENMGMSITGLVADGRVLARFIRTECMNYRYMHDSDLPLARLMDTLAEKHQRHTQSGGKRPFGVGLLIGGY---DSTG----PRLFQTAPSGDILEYKATAMGLRSQAARTYLEKHC------DELRNTSLSELVTHALRAL-SCATSEGVDLNIK--------NTTIAIVGKDTPFT 223          
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|1160561099|ref|XP_020431228.1| (20S proteasome subunit C2 [Polysphondylium pallidum PN500] >gi|281204912|gb|EFA79106.1| 20S proteasome subunit C2 [Polysphondylium pallidum PN500])

HSP 1 Score: 110.538 bits (275), Expect = 5.653e-25
Identity = 73/237 (30.80%), Postives = 127/237 (53.59%), Query Frame = 0
Query:   47 YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLA--KEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPY 281
            + P GR+ Q+EYA+EA ++G A V   S  + +L S + RSS       ++    ++  D +I +A +GL  D   L +  RNEC  ++Y+++S +RV RL   +A   ++H T+R+   PY V LLVAGY   D TG      +++  P+G   S+++ ++G  +++A  YL +        +  +G SL+E     L+AL  ++   D+G +         ++VSI +VG + P+
Sbjct:   13 FSPSGRIHQIEYAMEAVKQGSAAVALKSKQYAVLVS-LKRSSSELGSYQKK----IFVVDDHIGIAISGLTADARVLCNYMRNECANYKYVYESDMRVERLVTKVADKSQVH-TQRYGRRPYGVGLLVAGY---DQTGAH----IYQTCPSGNFYSYKSISIGARSQSAKTYLEKHF------EAFEGCSLQELIVHGLRALRETIPNSDTGLT--------SKNVSIGIVGHDQPF 222          
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|84997475|ref|XP_953459.1| (proteasome subunit, putative [Theileria annulata] >gi|65304455|emb|CAI76834.1| proteasome subunit, putative [Theileria annulata])

HSP 1 Score: 108.997 bits (271), Expect = 1.193e-24
Identity = 59/184 (32.07%), Postives = 103/184 (55.98%), Query Frame = 0
Query:   46 IYDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAK-EIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGD 228
            I+ P G ++Q+EYA+EA ++GG VVG  S D V++A+    +++ Q P   ++ L L   D+N+ALA  GL  D   LA+  R EC+ ++   D    VG +   +A+ +   T +  +  + V LLV G+D+       G+P LF+  P+G+  S++A ++G+ ++    YL +  +  L+ D
Sbjct:    9 IFSPDGHLMQVEYAMEAVKRGGCVVGVKSNDVVVIAAERKSTTKLQDPRCNKKILQL---DENLALAFAGLNADARVLANKTRLECQRYKLNMDEAATVGYIAKYIARLQQKYTHKGGVRLFGVSLLVVGFDY------NGKPALFQTEPSGIYSSWKAQSIGKNSKHVQEYLEKNYKEDLSSD 183          
The following BLAST results are available for this feature:
BLAST of EWM23962.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105248|gb|EWM23962.1|0.000e+0100.00proteasome a type [Nannochloropsis gaditana][more]
gi|294883434|ref|XP_002770938.1|9.881e-2730.96proteasome A type subunit, putative [Perkinsus mar... [more]
gi|294914356|ref|XP_002778255.1|2.399e-2631.54proteasome A type subunit, putative [Perkinsus mar... [more]
gi|955176483|emb|CUG06205.1|3.481e-2634.26proteasome alpha 1 subunit, putative [Bodo saltans... [more]
gi|290998333|ref|XP_002681735.1|1.565e-2532.5220S proteosome alpha subunit [Naegleria gruberi] >... [more]
gi|302831556|ref|XP_002947343.1|2.286e-2531.4720S proteasome alpha subunit F [Volvox carteri f. ... [more]
gi|294949392|ref|XP_002786174.1|2.834e-2530.54proteasome A type subunit, putative [Perkinsus mar... [more]
gi|452769093|gb|AGG11495.1|3.635e-2534.18hypothetical protein, partial [Trypanosomatidae sp... [more]
gi|1160561099|ref|XP_020431228.1|5.653e-2530.8020S proteasome subunit C2 [Polysphondylium pallidu... [more]
gi|84997475|ref|XP_953459.1|1.193e-2432.07proteasome subunit, putative [Theileria annulata] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6733rna6733Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications