EWM23962.1, cds6717 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|585105248|gb|EWM23962.1| (proteasome a type [Nannochloropsis gaditana]) HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0 Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0 Query: 1 MRPTLLPLLAIAALRLPTSLFASLTAPSGAPSIAPSVFYDAFSTRIYDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSLFVSWDPWSRRMKVSIPKALAQRFERQE 311 MRPTLLPLLAIAALRLPTSLFASLTAPSGAPSIAPSVFYDAFSTRIYDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSLFVSWDPWSRRMKVSIPKALAQRFERQE Sbjct: 1 MRPTLLPLLAIAALRLPTSLFASLTAPSGAPSIAPSVFYDAFSTRIYDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSLFVSWDPWSRRMKVSIPKALAQRFERQE 311
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|294883434|ref|XP_002770938.1| (proteasome A type subunit, putative [Perkinsus marinus ATCC 50983] >gi|239874064|gb|EER02754.1| proteasome A type subunit, putative [Perkinsus marinus ATCC 50983]) HSP 1 Score: 115.161 bits (287), Expect = 9.881e-27 Identity = 74/239 (30.96%), Postives = 124/239 (51.88%), Query Frame = 0 Query: 47 YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHD-TERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSL 284 + P+GR+ Q+EYA+EA ++G AVV IL ++ R S + + +Q+ ++ D +I +A +GL D + R+EC +H++ +D+P+ VGRL N + E + T+ PY V LLVAGYD P +++ P+G I + A A+G +++A YL + + D K L H L+AL +++ Q+ E+ SIA+VG++LP+ L Sbjct: 13 WSPQGRIFQIEYAMEAVKQGTAVVALRGKKHAILCAFRRRQS--DLASYQQK---IFRIDDHIGVAISGLTADARVICSFMRDECLSHKFTYDTPMSVGRLVNKIGVESQEKTQVASKRPYGVGLLVAGYD-------ENGPHIYETCPSGNIFEYYAMAIGGRSQSARTYLENNYEG--FDNSEDQKELLMHG---LKALAKTL---------QDEAKLTTENCSIAIVGEDLPFKEL 225
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|294914356|ref|XP_002778255.1| (proteasome A type subunit, putative [Perkinsus marinus ATCC 50983] >gi|239886458|gb|EER10050.1| proteasome A type subunit, putative [Perkinsus marinus ATCC 50983]) HSP 1 Score: 114.005 bits (284), Expect = 2.399e-26 Identity = 76/241 (31.54%), Postives = 125/241 (51.87%), Query Frame = 0 Query: 47 YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHD-TERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGN--DGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSL 284 + P+GR+ Q+EYA+EA ++G AVV IL ++ R S + + +Q+ ++ D +I +A +GL D + R+EC +H++ +D+P+ VGRL N + E + T+ PY V LLVAGYD P +++ P+G I + A A+G +++A YL + G N D K L H L+AL +++ Q+ E+ SIA+VG++LP+ L Sbjct: 13 WSPQGRIFQIEYAMEAVKQGTAVVALRGKKHAILCAFRRRQS--DLASYQQK---IFRIDDHIGVAISGLTADARVICSFMRDECLSHKFTYDTPMSVGRLVNKIGVESQEKTQVASKRPYGVGLLVAGYD-------ENGPHIYETCPSGNIFEYYAMAIGGRSQSARTYLENNYE----GFENIEDQKELLMHG---LKALAKTL---------QDDAKLTTENCSIAIVGEDLPFKEL 225
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|955176483|emb|CUG06205.1| (proteasome alpha 1 subunit, putative [Bodo saltans]) HSP 1 Score: 114.005 bits (284), Expect = 3.481e-26 Identity = 86/251 (34.26%), Postives = 131/251 (52.19%), Query Frame = 0 Query: 37 VFYDAFSTRI--YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERH----RILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPY 281 +F + + T I + P GR+ Q+EYA+EA +G A VGA + DFV+LA+ + RS ++ + +++ L D ++ +A TGL D LA R E HRY+ DS + V R+ LL E H +RH PY V LL+ GYD R P LF+ +P+G + F+A A+G ++AA YL + Q +L E +VL AL R++ G + E + +IA+VGK+ P+ Sbjct: 1 MFRNQYDTDITTWSPAGRLYQVEYAMEAVNQGSAAVGAKNKDFVVLAA-LKRSPNAELSSFQEKVFKL---DDHMGMAITGLVADGRKLARFIRTEANNHRYMQDSSIPVNRIAELLG-EKH--QRHIQSAAYRPYGVGLLIGGYD-------RQGPHLFQTSPSGDVYDFKATAMGVRSQAARTYLEKHFQ------SFPDTTLDE---LVLHAL-RAL-----GSTAPEGVELNIRNTTIAIVGKDTPF 222
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|290998333|ref|XP_002681735.1| (20S proteosome alpha subunit [Naegleria gruberi] >gi|284095360|gb|EFC48991.1| 20S proteosome alpha subunit [Naegleria gruberi]) HSP 1 Score: 110.923 bits (276), Expect = 1.565e-25 Identity = 80/246 (32.52%), Postives = 137/246 (55.69%), Query Frame = 0 Query: 37 VFYDAFSTRI--YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHDTERHRI-LPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNL 279 +F + + T I + P+GR+ Q+EYA+EA ++G A VG S DFV+LA+ + R+ ++ + +++ L+ D +I +A GLA D L+ RNEC +H+Y+ ++P+ V RL + +A + + + P+ V LLV GY D+TG L++ P+G + S++A A+G +++A Y + ND K L HA L+AL + TG++ + + + S+AVVGK+L Sbjct: 1 MFRNQYDTDITTWSPQGRLHQVEYAMEAVQQGSAAVGLKSKDFVVLAT-LKRAPHAELSSYQKK---LFKIDDHIGIAIAGLAADGRVLSKYMRNECMSHQYVFETPVPVQRLASKIADKSQKSTQSSSGRPFGVGLLVGGY---DETGAH----LYQTCPSGNLYSYKAIAIGARSQSAKTYFEKHYDTFT----NDWKDLIVHA---LKAL-KGTTGDNVELTTK--------NCSVAVVGKDL 219
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|302831556|ref|XP_002947343.1| (20S proteasome alpha subunit F [Volvox carteri f. nagariensis] >gi|300267207|gb|EFJ51391.1| 20S proteasome alpha subunit F [Volvox carteri f. nagariensis]) HSP 1 Score: 112.079 bits (279), Expect = 2.286e-25 Identity = 79/251 (31.47%), Postives = 131/251 (52.19%), Query Frame = 0 Query: 37 VFYDAFSTRI--YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIH-DTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSL 284 +F + + T + + P+GR+ Q+EYA+EA ++G VG S V+LA+ + S+ ++ + +++ + D ++ +A GL D +L RNEC HRY+++S + VGRL L+A + T+R PY V LLVAG D + P L+ P+G ++A A+G ++AA YL + + G + L +H+ LQA S+ E E + + S+AVVGK+L +T L Sbjct: 1 MFRNQYDTDVTTWSPQGRLFQVEYAMEAVKQGSCTVGLKSDTHVVLATL--KRSQSELSSFQRKVFKI---DDHLGIAIAGLTGDGRSLCKYMRNECINHRYVYESSMPVGRLVRLVADKAQVCTQRSWKRPYGVGLLVAGVDSQG-------PHLYSTCPSGNYYEYKAMAIGSRSQAAKTYLEKHFETF---PGANLDELVQHSLRALQA------------SLSEGE-LTDANCSVAVVGKDLSFTVL 223
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|294949392|ref|XP_002786174.1| (proteasome A type subunit, putative [Perkinsus marinus ATCC 50983] >gi|239900331|gb|EER17970.1| proteasome A type subunit, putative [Perkinsus marinus ATCC 50983]) HSP 1 Score: 110.923 bits (276), Expect = 2.834e-25 Identity = 73/239 (30.54%), Postives = 123/239 (51.46%), Query Frame = 0 Query: 47 YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAKEIHD-TERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYTSL 284 + P+GR+ Q+EYA+EA ++G AVV IL ++ R S + + +Q+ ++ D +I +A +GL D + R+EC +H++ +D+P+ VGRL N + E + T+ PY V LLVAGYD P +++ P+G I + A A+G +++A YL + + D K+L H L+AL +++ Q+ E+ SIA+VG+ P+ L Sbjct: 13 WSPQGRIFQIEYAMEAVKQGTAVVALRGEKHAILCAFRRRQS--DLASYQQK---IFRIDDHIGVAISGLTADARVICSFMRDECLSHKFTYDTPMSVGRLVNKIGVESQEKTQVASKRPYGVGLLVAGYD-------ENGPHIYETCPSGNIFEYYAMAIGGRSQSARTYLENNYES--FDNIEDQKALLMHG---LKALAKTL---------QDDAKLTTENCSIAIVGEEQPFKEL 225
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|452769093|gb|AGG11495.1| (hypothetical protein, partial [Trypanosomatidae sp. TS-2013]) HSP 1 Score: 110.923 bits (276), Expect = 3.635e-25 Identity = 81/237 (34.18%), Postives = 125/237 (52.74%), Query Frame = 0 Query: 47 YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLA-KEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPYT 282 + P GR+ Q+EYA EA G A VG + ++V++A+ + RS ++ + +++ L D+N+ ++ TGL D LA R EC +RY+HDS L + RL + LA K T+ P+ V LL+ GY D TG P LF+ AP+G I ++A A+G ++AA YL + D SL E T L+AL T E +++ + +IA+VGK+ P+T Sbjct: 13 WSPTGRLFQVEYANEAVNNGSAAVGVKNKEYVVIAA-LKRSPTAELSSYQEKVFVL---DENMGMSITGLVADGRVLARFIRTECMNYRYMHDSDLPLARLMDTLAEKHQRHTQSGGKRPFGVGLLIGGY---DSTG----PRLFQTAPSGDILEYKATAMGLRSQAARTYLEKHC------DELRNTSLSELVTHALRAL-SCATSEGVDLNIK--------NTTIAIVGKDTPFT 223
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|1160561099|ref|XP_020431228.1| (20S proteasome subunit C2 [Polysphondylium pallidum PN500] >gi|281204912|gb|EFA79106.1| 20S proteasome subunit C2 [Polysphondylium pallidum PN500]) HSP 1 Score: 110.538 bits (275), Expect = 5.653e-25 Identity = 73/237 (30.80%), Postives = 127/237 (53.59%), Query Frame = 0 Query: 47 YDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLA--KEIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGDGNDGKSLREHATVVLQALVRSMTGEDSGRSVQESECCIEEDVSIAVVGKNLPY 281 + P GR+ Q+EYA+EA ++G A V S + +L S + RSS ++ ++ D +I +A +GL D L + RNEC ++Y+++S +RV RL +A ++H T+R+ PY V LLVAGY D TG +++ P+G S+++ ++G +++A YL + + +G SL+E L+AL ++ D+G + ++VSI +VG + P+ Sbjct: 13 FSPSGRIHQIEYAMEAVKQGSAAVALKSKQYAVLVS-LKRSSSELGSYQKK----IFVVDDHIGIAISGLTADARVLCNYMRNECANYKYVYESDMRVERLVTKVADKSQVH-TQRYGRRPYGVGLLVAGY---DQTGAH----IYQTCPSGNFYSYKSISIGARSQSAKTYLEKHF------EAFEGCSLQELIVHGLRALRETIPNSDTGLT--------SKNVSIGIVGHDQPF 222
BLAST of EWM23962.1 vs. NCBI_GenBank
Match: gi|84997475|ref|XP_953459.1| (proteasome subunit, putative [Theileria annulata] >gi|65304455|emb|CAI76834.1| proteasome subunit, putative [Theileria annulata]) HSP 1 Score: 108.997 bits (271), Expect = 1.193e-24 Identity = 59/184 (32.07%), Postives = 103/184 (55.98%), Query Frame = 0 Query: 46 IYDPKGRVLQLEYALEAARKGGAVVGAVSGDFVILASWIPRSSRRQMPTTRQEALGLWHCDKNIALAGTGLATDVIALADLARNECRAHRYIHDSPLRVGRLTNLLAK-EIHDTERHRILPYAVDLLVAGYDFEDDTGGRGRPGLFKIAPAGVIQSFRACAVGRGAEAAHAYLSEKLQVSLAGD 228 I+ P G ++Q+EYA+EA ++GG VVG S D V++A+ +++ Q P ++ L L D+N+ALA GL D LA+ R EC+ ++ D VG + +A+ + T + + + V LLV G+D+ G+P LF+ P+G+ S++A ++G+ ++ YL + + L+ D Sbjct: 9 IFSPDGHLMQVEYAMEAVKRGGCVVGVKSNDVVVIAAERKSTTKLQDPRCNKKILQL---DENLALAFAGLNADARVLANKTRLECQRYKLNMDEAATVGYIAKYIARLQQKYTHKGGVRLFGVSLLVVGFDY------NGKPALFQTEPSGIYSSWKAQSIGKNSKHVQEYLEKNYKEDLSSD 183 The following BLAST results are available for this feature:
BLAST of EWM23962.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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