EWM30610.1, cds67 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|585113282|gb|EWM30610.1| (thymidylate synthase [Nannochloropsis gaditana]) HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query: 1 MHNKRAGYIPSVLGPVASVLFLLRGMRAVTFLSWPQSIKLTAAFSTTAATRVVAHTALRTGSMTVFGPLMAATKSASFKTLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLEEC 268
MHNKRAGYIPSVLGPVASVLFLLRGMRAVTFLSWPQSIKLTAAFSTTAATRVVAHTALRTGSMTVFGPLMAATKSASFKTLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLEEC
Sbjct: 1 MHNKRAGYIPSVLGPVASVLFLLRGMRAVTFLSWPQSIKLTAAFSTTAATRVVAHTALRTGSMTVFGPLMAATKSASFKTLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLEEC 268
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|738305634|ref|WP_036258662.1| (IMPACT family member in pol 5'region [Meiothermus cerbereus]) HSP 1 Score: 184.882 bits (468), Expect = 7.506e-55 Identity = 92/187 (49.20%), Postives = 124/187 (66.31%), Query Frame = 0
Query: 80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLE 266
TL G YE +K+SRF++ A P +S AEA FL+ V D+ A+HNCWA++ + R DDGEP GTAGRPIL AI+++ L VMVVVTRYFGGIKLGAGGLVRAYGGVA CLR A P + +LRAP + A++Q ++ E+Y E + V+V+++ + L+ L+D TRG +L+
Sbjct: 7 TLQGIYSYEHEVKRSRFVAHAAPLASSAEAPAFLQAVRDVHATHNCWAYKVGSQYRFFDDGEPAGTAGRPILGAIDAQGLDRVMVVVTRYFGGIKLGAGGLVRAYGGVAAECLRQAPKQAIRPMMRCQLRAPFEYTNALYQITEGLKRLTENYDEEGVWVEVQIEEQQLPRLQALLRDVTRGRATLQ 193
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|503469262|ref|WP_013703923.1| (hypothetical protein [Marinithermus hydrothermalis] >gi|328450975|gb|AEB11876.1| Uncharacterized protein family UPF0029, Impact, N-terminal protein [Marinithermus hydrothermalis DSM 14884]) HSP 1 Score: 183.726 bits (465), Expect = 1.652e-54 Identity = 98/187 (52.41%), Postives = 121/187 (64.71%), Query Frame = 0
Query: 78 FKTLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINR--TDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGS 262
+T+A P Y E IKKSRF++ A P + EA FL V D +A+HNCWA++ R SDDGEPGGTAG+PIL AIE + L VMVVVTRYFGGIKLGAGGLVRAYGGVA TCLR A P+V V+L P G V+ + R K E YT + + +++DAA ++ R+ L DATRG
Sbjct: 1 MRTIAEPYTYAEEIKKSRFIAHAAPVETPEEAMAFLEAVRDPQATHNCWAYKIGQAYRFSDDGEPGGTAGQPILRAIEGQGLDHVMVVVTRYFGGIKLGAGGLVRAYGGVAATCLRQAPKREVRPQVPVQLSVPFEAMGGVYPVLERFAVTKEAERYTQAGLELALRLDAADLEAFRRALTDATRGK 187
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|517277061|ref|WP_018465879.1| (hypothetical protein [Meiothermus timidus]) HSP 1 Score: 183.341 bits (464), Expect = 2.855e-54 Identity = 92/189 (48.68%), Postives = 129/189 (68.25%), Query Frame = 0
Query: 80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIK--EDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLE 266
TLA P E E++++KSRF++RA PA++ EA FL V + +A+HNCWA++ R DDGEPGGTAG+PIL AI+++ L VMVVVTRYFGG+KLGAGGL RAYGGVA CLR A +P++ +RL AP M+G V+ + R + E YT ++++ ++ A ++ R L+DA+RG+ LE
Sbjct: 3 TLAAPCELEQLVQKSRFIARAAPATTPEEALAFLERVREPEATHNCWAYQIGLLYRFCDDGEPGGTAGQPILRAIQAQGLDRVMVVVTRYFGGVKLGAGGLARAYGGVAAECLRQAPKREIVPRLRLRLEAPFEMAGQVYALLERWKLAREFEGYTEAGLVLEFVLEEARLEAFRVALRDASRGALRLE 191
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|829068225|ref|WP_047301538.1| (thymidylate synthase [Pseudomonas fluorescens]) HSP 1 Score: 178.718 bits (452), Expect = 1.268e-52 Identity = 92/184 (50.00%), Postives = 120/184 (65.22%), Query Frame = 0
Query: 80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDK--IKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261
TLAGP EY E I+KSRF++ A P S AEAQ F++ DL ASHNCWAW+ + RS+DDGEPGGTAGRPIL+AIE++D V V+V R++GGI+LG GGL RAYGG A CL+ AE + + +V +R S V I + E +TA + + + + ALID L+QQL D +RG
Sbjct: 4 TLAGPCEYREEIRKSRFITFAAPIGSAAEAQAFIQQHSDLNASHNCWAWKLGDQYRSNDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQGAERIALVNRVPLRCACSFSELALVKLRIAELGGLLVDEAFTANGVELQLALGEALIDTLQQQLADLSRG 187
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|515533557|ref|WP_016966689.1| (thymidylate synthase [Pseudomonas fluorescens]) HSP 1 Score: 178.718 bits (452), Expect = 1.508e-52 Identity = 92/184 (50.00%), Postives = 120/184 (65.22%), Query Frame = 0
Query: 80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDK--IKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261
TLAGP EY E I+KSRF++ A P S AEAQ F++ DL ASHNCWAW+ + RS+DDGEPGGTAGRPIL+AIE++D V V+V R++GGI+LG GGL RAYGG A CL+ AE + + +V +R S V I + E +TA + + + + ALID L+QQL D +RG
Sbjct: 4 TLAGPCEYREEIRKSRFITFAAPIDSAAEAQAFIQQHSDLNASHNCWAWKLGDQYRSNDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQGAERIALVNRVPLRCACSFSELALVKLRIAELGGLLVDEAFTANGVELQLALGEALIDTLQQQLADLSRG 187
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|502923662|ref|WP_013158638.1| (hypothetical protein [Meiothermus silvanus] >gi|296851078|gb|ADH64093.1| protein of unknown function UPF0029 [Meiothermus silvanus DSM 9946]) HSP 1 Score: 177.563 bits (449), Expect = 3.863e-52 Identity = 91/188 (48.40%), Postives = 123/188 (65.43%), Query Frame = 0
Query: 80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTD--KIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSL 265
TLA P E+ I+KSRF+++A P S A FLR V + ASHNCWA++ R SDDGEPGGTAG+PIL AI+++ L VMVVVTRYFGGIKLGAGGLVRAYGG+A CLR A +P V ++L AP ++G V+ + R + E Y+ ++V++ ++ A ++ R+ + D TRG L
Sbjct: 4 TLAEPHTLEQHIQKSRFIAKAAPVESPESALAFLRGVSEPAASHNCWAYQIGLHYRFSDDGEPGGTAGQPILRAIQAQGLDQVMVVVTRYFGGIKLGAGGLVRAYGGIAAQCLRAAPKREIVPLVRLQLEAPFELAGQVYGLLERWKLARASETYSQAGLVVEIVIEEARLEEFRRAIVDGTRGRSIL 191
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|499371520|ref|WP_011059098.1| (thymidylate synthase [Pseudomonas protegens] >gi|68348530|gb|AAY96136.1| conserved hypothetical protein [Pseudomonas protegens Pf-5] >gi|1210945914|gb|ASE19736.1| thymidylate synthase [Pseudomonas protegens]) HSP 1 Score: 177.563 bits (449), Expect = 4.659e-52 Identity = 91/184 (49.46%), Postives = 120/184 (65.22%), Query Frame = 0
Query: 80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDK--IKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261
TLAG EY E I+KSRF++ A P SS AEAQ F++ DL ASHNCWAW+ + RS+DDGEPGGTAGRPIL+AIE++D V V+V R++GGI+LG GGL RAYGG A CL+ AE + I +V +R S V + ++ED+TA + + + + ID L+QQL D +RG
Sbjct: 4 TLAGLCEYREEIRKSRFITFAAPISSAAEAQAFIQQYSDLNASHNCWAWKLADQYRSNDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQGAERIALINRVPLRCACSFSELALVKLRVAELGGLLVQEDFTANGVELQLALGEEQIDTLQQQLADLSRG 187
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|640707205|ref|WP_025130624.1| (thymidylate synthase [Pseudomonas sp. PH1b]) HSP 1 Score: 177.178 bits (448), Expect = 5.482e-52 Identity = 92/184 (50.00%), Postives = 121/184 (65.76%), Query Frame = 0
Query: 80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDK--IKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261
TLAG EY E I+KSRF++ A P SS AEAQ F++ DL ASHNCWAW+ + RS+DDGEPGGTAGRPIL+AIE++D V V+V R++GGI+LG GGL RAYGG A CL+ AE + I +V +R S V I ++E++TA + + + + A ID L+QQL D +RG
Sbjct: 4 TLAGLCEYREEIRKSRFITFAAPISSAAEAQAFIQQHSDLNASHNCWAWKLADQYRSNDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQGAERVALINRVPLRCACAFSELALVKLRITELGGLLVEEEFTANGVELQLALGEAQIDTLQQQLADLSRG 187
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|985597898|ref|WP_060837395.1| (thymidylate synthase [Pseudomonas sp. Os17] >gi|771840629|dbj|BAQ72416.1| thymidylate synthase [Pseudomonas sp. Os17]) HSP 1 Score: 177.178 bits (448), Expect = 5.725e-52 Identity = 92/184 (50.00%), Postives = 121/184 (65.76%), Query Frame = 0
Query: 80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDK--IKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261
TLAG EY E I+KSRF++ A P SS AEAQ F++ DL ASHNCWAW+ + RS+DDGEPGGTAGRPIL+AIE++D V V+V R++GGI+LG GGL RAYGG A CL++AE + + +V +R S V I + E +TA + + + + ALID L+QQL D +RG
Sbjct: 4 TLAGLCEYREEIRKSRFITFAAPISSAAEAQAFIQQHSDLNASHNCWAWKLGDQYRSNDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQSAERIALVNRVPLRCACSFSELALVKLRIAELGGLLVDEAFTANGVELQLALGEALIDTLQQQLADLSRG 187 The following BLAST results are available for this feature:
BLAST of EWM30610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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