EWM30610.1, cds67 (CDS) Nannochloropsis gaditana

Overview
NameEWM30610.1
Unique Namecds67
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:191005..191271 -
Alignment locationCM002455.1:190792..190910 -
Alignment locationCM002455.1:190501..190617 -
Alignment locationCM002455.1:190126..190282 -
Alignment locationCM002455.1:189852..189998 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30610.1
Productthymidylate synthase
Orig transcript idgnl|cribi|Naga_100129g12.1888.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:191005..191271 -
CM002455.1supercontigCM002455.1:190792..190910 -
CM002455.1supercontigCM002455.1:190501..190617 -
CM002455.1supercontigCM002455.1:190126..190282 -
CM002455.1supercontigCM002455.1:189852..189998 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR020569UPF0029_Impact_CS
IPR023582Impact
IPR000640EFG_V
IPR001498Impact_N
Homology
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|585113282|gb|EWM30610.1| (thymidylate synthase [Nannochloropsis gaditana])

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MHNKRAGYIPSVLGPVASVLFLLRGMRAVTFLSWPQSIKLTAAFSTTAATRVVAHTALRTGSMTVFGPLMAATKSASFKTLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLEEC 268
            MHNKRAGYIPSVLGPVASVLFLLRGMRAVTFLSWPQSIKLTAAFSTTAATRVVAHTALRTGSMTVFGPLMAATKSASFKTLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLEEC
Sbjct:    1 MHNKRAGYIPSVLGPVASVLFLLRGMRAVTFLSWPQSIKLTAAFSTTAATRVVAHTALRTGSMTVFGPLMAATKSASFKTLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLEEC 268          
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|738305634|ref|WP_036258662.1| (IMPACT family member in pol 5'region [Meiothermus cerbereus])

HSP 1 Score: 184.882 bits (468), Expect = 7.506e-55
Identity = 92/187 (49.20%), Postives = 124/187 (66.31%), Query Frame = 0
Query:   80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLE 266
            TL G   YE  +K+SRF++ A P +S AEA  FL+ V D+ A+HNCWA++   + R  DDGEP GTAGRPIL AI+++ L  VMVVVTRYFGGIKLGAGGLVRAYGGVA  CLR A      P +  +LRAP   + A++Q      ++ E+Y  E + V+V+++   +  L+  L+D TRG  +L+
Sbjct:    7 TLQGIYSYEHEVKRSRFVAHAAPLASSAEAPAFLQAVRDVHATHNCWAYKVGSQYRFFDDGEPAGTAGRPILGAIDAQGLDRVMVVVTRYFGGIKLGAGGLVRAYGGVAAECLRQAPKQAIRPMMRCQLRAPFEYTNALYQITEGLKRLTENYDEEGVWVEVQIEEQQLPRLQALLRDVTRGRATLQ 193          
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|503469262|ref|WP_013703923.1| (hypothetical protein [Marinithermus hydrothermalis] >gi|328450975|gb|AEB11876.1| Uncharacterized protein family UPF0029, Impact, N-terminal protein [Marinithermus hydrothermalis DSM 14884])

HSP 1 Score: 183.726 bits (465), Expect = 1.652e-54
Identity = 98/187 (52.41%), Postives = 121/187 (64.71%), Query Frame = 0
Query:   78 FKTLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINR--TDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGS 262
             +T+A P  Y E IKKSRF++ A P  +  EA  FL  V D +A+HNCWA++     R SDDGEPGGTAG+PIL AIE + L  VMVVVTRYFGGIKLGAGGLVRAYGGVA TCLR A      P+V V+L  P    G V+  + R    K  E YT   + + +++DAA ++  R+ L DATRG 
Sbjct:    1 MRTIAEPYTYAEEIKKSRFIAHAAPVETPEEAMAFLEAVRDPQATHNCWAYKIGQAYRFSDDGEPGGTAGQPILRAIEGQGLDHVMVVVTRYFGGIKLGAGGLVRAYGGVAATCLRQAPKREVRPQVPVQLSVPFEAMGGVYPVLERFAVTKEAERYTQAGLELALRLDAADLEAFRRALTDATRGK 187          
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|517277061|ref|WP_018465879.1| (hypothetical protein [Meiothermus timidus])

HSP 1 Score: 183.341 bits (464), Expect = 2.855e-54
Identity = 92/189 (48.68%), Postives = 129/189 (68.25%), Query Frame = 0
Query:   80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIK--EDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLE 266
            TLA P E E++++KSRF++RA PA++  EA  FL  V + +A+HNCWA++     R  DDGEPGGTAG+PIL AI+++ L  VMVVVTRYFGG+KLGAGGL RAYGGVA  CLR A     +P++ +RL AP  M+G V+  + R    +  E YT   ++++  ++ A ++  R  L+DA+RG+  LE
Sbjct:    3 TLAAPCELEQLVQKSRFIARAAPATTPEEALAFLERVREPEATHNCWAYQIGLLYRFCDDGEPGGTAGQPILRAIQAQGLDRVMVVVTRYFGGVKLGAGGLARAYGGVAAECLRQAPKREIVPRLRLRLEAPFEMAGQVYALLERWKLAREFEGYTEAGLVLEFVLEEARLEAFRVALRDASRGALRLE 191          
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|829068225|ref|WP_047301538.1| (thymidylate synthase [Pseudomonas fluorescens])

HSP 1 Score: 178.718 bits (452), Expect = 1.268e-52
Identity = 92/184 (50.00%), Postives = 120/184 (65.22%), Query Frame = 0
Query:   80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDK--IKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261
            TLAGP EY E I+KSRF++ A P  S AEAQ F++   DL ASHNCWAW+   + RS+DDGEPGGTAGRPIL+AIE++D   V V+V R++GGI+LG GGL RAYGG A  CL+ AE +  + +V +R     S    V   I       + E +TA  + + + +  ALID L+QQL D +RG
Sbjct:    4 TLAGPCEYREEIRKSRFITFAAPIGSAAEAQAFIQQHSDLNASHNCWAWKLGDQYRSNDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQGAERIALVNRVPLRCACSFSELALVKLRIAELGGLLVDEAFTANGVELQLALGEALIDTLQQQLADLSRG 187          
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|515533557|ref|WP_016966689.1| (thymidylate synthase [Pseudomonas fluorescens])

HSP 1 Score: 178.718 bits (452), Expect = 1.508e-52
Identity = 92/184 (50.00%), Postives = 120/184 (65.22%), Query Frame = 0
Query:   80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDK--IKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261
            TLAGP EY E I+KSRF++ A P  S AEAQ F++   DL ASHNCWAW+   + RS+DDGEPGGTAGRPIL+AIE++D   V V+V R++GGI+LG GGL RAYGG A  CL+ AE +  + +V +R     S    V   I       + E +TA  + + + +  ALID L+QQL D +RG
Sbjct:    4 TLAGPCEYREEIRKSRFITFAAPIDSAAEAQAFIQQHSDLNASHNCWAWKLGDQYRSNDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQGAERIALVNRVPLRCACSFSELALVKLRIAELGGLLVDEAFTANGVELQLALGEALIDTLQQQLADLSRG 187          
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|502923662|ref|WP_013158638.1| (hypothetical protein [Meiothermus silvanus] >gi|296851078|gb|ADH64093.1| protein of unknown function UPF0029 [Meiothermus silvanus DSM 9946])

HSP 1 Score: 177.563 bits (449), Expect = 3.863e-52
Identity = 91/188 (48.40%), Postives = 123/188 (65.43%), Query Frame = 0
Query:   80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTD--KIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSL 265
            TLA P   E+ I+KSRF+++A P  S   A  FLR V +  ASHNCWA++     R SDDGEPGGTAG+PIL AI+++ L  VMVVVTRYFGGIKLGAGGLVRAYGG+A  CLR A     +P V ++L AP  ++G V+  + R    +  E Y+   ++V++ ++ A ++  R+ + D TRG   L
Sbjct:    4 TLAEPHTLEQHIQKSRFIAKAAPVESPESALAFLRGVSEPAASHNCWAYQIGLHYRFSDDGEPGGTAGQPILRAIQAQGLDQVMVVVTRYFGGIKLGAGGLVRAYGGIAAQCLRAAPKREIVPLVRLQLEAPFELAGQVYGLLERWKLARASETYSQAGLVVEIVIEEARLEEFRRAIVDGTRGRSIL 191          
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|499371520|ref|WP_011059098.1| (thymidylate synthase [Pseudomonas protegens] >gi|68348530|gb|AAY96136.1| conserved hypothetical protein [Pseudomonas protegens Pf-5] >gi|1210945914|gb|ASE19736.1| thymidylate synthase [Pseudomonas protegens])

HSP 1 Score: 177.563 bits (449), Expect = 4.659e-52
Identity = 91/184 (49.46%), Postives = 120/184 (65.22%), Query Frame = 0
Query:   80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDK--IKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261
            TLAG  EY E I+KSRF++ A P SS AEAQ F++   DL ASHNCWAW+   + RS+DDGEPGGTAGRPIL+AIE++D   V V+V R++GGI+LG GGL RAYGG A  CL+ AE +  I +V +R     S    V   +       ++ED+TA  + + + +    ID L+QQL D +RG
Sbjct:    4 TLAGLCEYREEIRKSRFITFAAPISSAAEAQAFIQQYSDLNASHNCWAWKLADQYRSNDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQGAERIALINRVPLRCACSFSELALVKLRVAELGGLLVQEDFTANGVELQLALGEEQIDTLQQQLADLSRG 187          
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|640707205|ref|WP_025130624.1| (thymidylate synthase [Pseudomonas sp. PH1b])

HSP 1 Score: 177.178 bits (448), Expect = 5.482e-52
Identity = 92/184 (50.00%), Postives = 121/184 (65.76%), Query Frame = 0
Query:   80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDK--IKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261
            TLAG  EY E I+KSRF++ A P SS AEAQ F++   DL ASHNCWAW+   + RS+DDGEPGGTAGRPIL+AIE++D   V V+V R++GGI+LG GGL RAYGG A  CL+ AE +  I +V +R     S    V   I       ++E++TA  + + + +  A ID L+QQL D +RG
Sbjct:    4 TLAGLCEYREEIRKSRFITFAAPISSAAEAQAFIQQHSDLNASHNCWAWKLADQYRSNDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQGAERVALINRVPLRCACAFSELALVKLRITELGGLLVEEEFTANGVELQLALGEAQIDTLQQQLADLSRG 187          
BLAST of EWM30610.1 vs. NCBI_GenBank
Match: gi|985597898|ref|WP_060837395.1| (thymidylate synthase [Pseudomonas sp. Os17] >gi|771840629|dbj|BAQ72416.1| thymidylate synthase [Pseudomonas sp. Os17])

HSP 1 Score: 177.178 bits (448), Expect = 5.725e-52
Identity = 92/184 (50.00%), Postives = 121/184 (65.76%), Query Frame = 0
Query:   80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDK--IKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261
            TLAG  EY E I+KSRF++ A P SS AEAQ F++   DL ASHNCWAW+   + RS+DDGEPGGTAGRPIL+AIE++D   V V+V R++GGI+LG GGL RAYGG A  CL++AE +  + +V +R     S    V   I       + E +TA  + + + +  ALID L+QQL D +RG
Sbjct:    4 TLAGLCEYREEIRKSRFITFAAPISSAAEAQAFIQQHSDLNASHNCWAWKLGDQYRSNDDGEPGGTAGRPILAAIEAQDCDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQSAERIALVNRVPLRCACSFSELALVKLRIAELGGLLVDEAFTANGVELQLALGEALIDTLQQQLADLSRG 187          
The following BLAST results are available for this feature:
BLAST of EWM30610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113282|gb|EWM30610.1|0.000e+0100.00thymidylate synthase [Nannochloropsis gaditana][more]
gi|738305634|ref|WP_036258662.1|7.506e-5549.20IMPACT family member in pol 5'region [Meiothermus ... [more]
gi|503469262|ref|WP_013703923.1|1.652e-5452.41hypothetical protein [Marinithermus hydrothermalis... [more]
gi|517277061|ref|WP_018465879.1|2.855e-5448.68hypothetical protein [Meiothermus timidus][more]
gi|829068225|ref|WP_047301538.1|1.268e-5250.00thymidylate synthase [Pseudomonas fluorescens][more]
gi|515533557|ref|WP_016966689.1|1.508e-5250.00thymidylate synthase [Pseudomonas fluorescens][more]
gi|502923662|ref|WP_013158638.1|3.863e-5248.40hypothetical protein [Meiothermus silvanus] >gi|29... [more]
gi|499371520|ref|WP_011059098.1|4.659e-5249.46thymidylate synthase [Pseudomonas protegens] >gi|6... [more]
gi|640707205|ref|WP_025130624.1|5.482e-5250.00thymidylate synthase [Pseudomonas sp. PH1b][more]
gi|985597898|ref|WP_060837395.1|5.725e-5250.00thymidylate synthase [Pseudomonas sp. Os17] >gi|77... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna67rna67Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications