EWM23984.1, cds6696 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|585105270|gb|EWM23984.1| (hypothetical protein Naga_100027g18 [Nannochloropsis gaditana]) HSP 1 Score: 666.766 bits (1719), Expect = 0.000e+0 Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query: 1 MVKETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNRRSLLSSTAPTSDLSTDRTRGTTPAHGEGTEDHLLLSSREPAPPLRGLSLSRESSAHSSSSTSSHLPLLGSSGPAQKRSRPNEANPCPRPGHLAGASPSPLELLSSRRAGKDEAIAGETQTCLKRSTSASHRALSSTSAGPEANSSLATDMLRFRNEQDKAKYEEWKVSVRAAAANKERKNVKDVTMKNEMKESMGTAVGSAVA 330
MVKETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNRRSLLSSTAPTSDLSTDRTRGTTPAHGEGTEDHLLLSSREPAPPLRGLSLSRESSAHSSSSTSSHLPLLGSSGPAQKRSRPNEANPCPRPGHLAGASPSPLELLSSRRAGKDEAIAGETQTCLKRSTSASHRALSSTSAGPEANSSLATDMLRFRNEQDKAKYEEWKVSVRAAAANKERKNVKDVTMKNEMKESMGTAVGSAVA
Sbjct: 1 MVKETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNRRSLLSSTAPTSDLSTDRTRGTTPAHGEGTEDHLLLSSREPAPPLRGLSLSRESSAHSSSSTSSHLPLLGSSGPAQKRSRPNEANPCPRPGHLAGASPSPLELLSSRRAGKDEAIAGETQTCLKRSTSASHRALSSTSAGPEANSSLATDMLRFRNEQDKAKYEEWKVSVRAAAANKERKNVKDVTMKNEMKESMGTAVGSAVA 330
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|470124875|ref|XP_004298434.1| (PREDICTED: origin of replication complex subunit 6 [Fragaria vesca subsp. vesca]) HSP 1 Score: 67.0106 bits (162), Expect = 5.482e-9 Identity = 37/123 (30.08%), Postives = 62/123 (50.41%), Query Frame = 0
Query: 4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSL----QGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGT 122
E +Y ++ L + + A+ G + +P ++ L+ Y+ R+ +SL + G R ++V AF+L AKK K+ VDK +L+ LSG E S+V SM++ C D+ GT
Sbjct: 74 EKAYTRSFNSLQNGLGVKNKLDVRELAIQFGCVRIIPFVQKGLSLYKTRFLASLLPSRRAGADFTR-----PVFVAVAFYLCAKKHKLKVDKIKLIELSGTSEAEFSSVSVSMKDLCFDVYGT 191
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|168032927|ref|XP_001768969.1| (predicted protein [Physcomitrella patens] >gi|162679881|gb|EDQ66323.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 65.855 bits (159), Expect = 1.126e-8 Identity = 49/167 (29.34%), Postives = 84/167 (50.30%), Query Frame = 0
Query: 4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNR--RSLLSS-TAPTSDLSTDRTRGT-----TPAHGEGTEDHLLL 162
E +Y L ++AL L + A+ G + + +R L+ Y+ R+ ++L + S+ + + AAFFL ++K K+ VDK RL+ + GA E S + ASM + C DLVG + R +++ S+ T ++S R+R T + A ED L++
Sbjct: 74 EKAYVRSLTALQNALGLRPKVDVRELAIQFGCIRLIGAVQRVLSLYKQRFVAALPESRRTSADFSRPA-FTAAAFFLCSRKNKLKVDKIRLMEICGASDPEFSNIIASMNDLCFDLVGMEKEKRDPKTIKSNEDLLTVNVSGKRSRDTDEASESDAESIDNEDDLVI 239
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|694361199|ref|XP_009360345.1| (PREDICTED: origin of replication complex subunit 6 [Pyrus x bretschneideri]) HSP 1 Score: 65.0846 bits (157), Expect = 2.329e-8 Identity = 34/124 (27.42%), Postives = 64/124 (51.61%), Query Frame = 0
Query: 4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNR 127
E +Y ++ L + + A+ G + +P ++ L+ Y+ R+ +SL + ++ +++ AF+L AKK K+ VDK +L+ L GA E S+V SM++ C D+ GT + +
Sbjct: 74 EKAYTRSYNSMQNGLGVKNKLDVRELAIQFGCVRIIPFVQKALSLYKTRFLASLPASRRASADFTR-PVFIAVAFYLCAKKHKLKVDKLKLIELCGASETEFSSVSTSMKDLCFDVCGTEKEKK 196
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|552823414|ref|XP_005846350.1| (hypothetical protein CHLNCDRAFT_11567, partial [Chlorella variabilis] >gi|307106001|gb|EFN54248.1| hypothetical protein CHLNCDRAFT_11567, partial [Chlorella variabilis]) HSP 1 Score: 62.7734 bits (151), Expect = 2.840e-8 Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 0
Query: 2 VKETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNRRS 129
V E YR+ + L +T+ +A + + G P LA Y++R+ SL + + + +++ AAF+L A+K K+ VD+ +LL+ G EL+ CASM C DLVG + RR+
Sbjct: 32 VGERVYRNAKAALQKVLGVTSKTTARELCVQFGCAGHEPAVRAALAAYKDRFVRSLPAAQ-QRHVDFGRPVFLAAAFYLVARKKKVAVDRVKLLDPLGVTAAELAQACASMANLCHDLVGCEPRKRRA 158
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|1208539192|gb|OWM89554.1| (hypothetical protein CDL15_Pgr024302 [Punica granatum]) HSP 1 Score: 64.6994 bits (156), Expect = 3.365e-8 Identity = 37/138 (26.81%), Postives = 65/138 (47.10%), Query Frame = 0
Query: 4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVG--------TPAKNRRSLLSS 133
E +Y ++ + + + + + G + +PL ++ L+ Y+ R+ SSL A + ++ AF+L AKK K+ +DK +L+ + G E S VC SM++ C D+ G T K R LL +
Sbjct: 74 EKAYNRSFNSLQNGIGVNNTLDIRELGIQFGCVRIIPLVKKGLSLYKERFISSLPASR-RATADFTRPVFTAVAFYLCAKKHKLKIDKLKLIEVCGTSETEFSCVCNSMKDLCFDVFGVAKEKKDPTEVKGNRDLLDA 210
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|970027519|ref|XP_015075059.1| (PREDICTED: origin of replication complex subunit 6 [Solanum pennellii]) HSP 1 Score: 64.3142 bits (155), Expect = 4.033e-8 Identity = 34/119 (28.57%), Postives = 62/119 (52.10%), Query Frame = 0
Query: 4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGT 122
E +Y ++ + + + A+ G + +P ++ L+ Y++R+R+SL + S+ ++ AAF+L AKK K+ VDK +L+ L G E ++V SM + C D+ GT
Sbjct: 74 EKAYNRSFTSMQNGIGVKNKLDIRELAIQFGCIRLIPFVQKGLSLYKDRFRTSLPPSRRASADFSR-PVFTAAAFYLCAKKHKLKVDKMKLIELCGTSEPEFASVSTSMNDLCFDVFGT 191
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|657994333|ref|XP_008389471.1| (PREDICTED: origin of replication complex subunit 6 isoform X3 [Malus domestica]) HSP 1 Score: 63.1586 bits (152), Expect = 7.842e-8 Identity = 33/119 (27.73%), Postives = 61/119 (51.26%), Query Frame = 0
Query: 4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGT 122
E +Y ++ L + + A+ G + +P ++ L+ Y+ R+ +SL + ++ +++ AF+L AKK K+ VDK +L+ L GA E +V SM++ C D+ GT
Sbjct: 74 EKAYTRSYNSMQNGLGVKNKLDVRELAIQFGCVRIIPFVQKALSLYKTRFLASLPASRRASADFTR-PVFIAVAFYLCAKKHKLKVDKLKLIELCGASETEFXSVSTSMKDLCFDVCGT 191
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|1026094810|ref|XP_016546628.1| (PREDICTED: origin of replication complex subunit 6 [Capsicum annuum]) HSP 1 Score: 63.5438 bits (153), Expect = 8.065e-8 Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 0
Query: 28 QFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGT 122
+ A+ G + +P ++ L+ Y++R+RSSL + S+ ++ AAF+L AK+ K+ VDK +L+ + G E + V SM + C D+ GT
Sbjct: 98 ELAIQFGCIRLIPFVQKGLSLYKDRFRSSLPPSRKASADFSR-PVFTAAAFYLCAKRHKLKVDKMKLIEVCGTSESEFANVSTSMNDLCFDVFGT 191
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|460386209|ref|XP_004238792.1| (PREDICTED: origin of replication complex subunit 6 [Solanum lycopersicum]) HSP 1 Score: 63.5438 bits (153), Expect = 8.065e-8 Identity = 33/119 (27.73%), Postives = 62/119 (52.10%), Query Frame = 0
Query: 4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGT 122
E +Y ++ + + + A+ G + +P ++ L+ Y++R+R+SL + S+ ++ AAF+L AK+ K+ VDK +L+ L G E ++V SM + C D+ GT
Sbjct: 74 EKAYNRSFTSMQNGIGVKNKLDIRELAIQFGCIRLIPFVQKGLSLYKDRFRTSLPPSRRASADFSR-PVFTAAAFYLCAKRHKLKVDKMKLIELCGTSEPEFASVSTSMNDLCFDVFGT 191 The following BLAST results are available for this feature:
BLAST of EWM23984.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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