EWM23984.1, cds6696 (CDS) Nannochloropsis gaditana

Overview
NameEWM23984.1
Unique Namecds6696
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:321771..322028 +
Alignment locationCM002469.1:322117..322851 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23984.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100027g18.162.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:321771..322028 +
CM002469.1supercontigCM002469.1:322117..322851 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|585105270|gb|EWM23984.1| (hypothetical protein Naga_100027g18 [Nannochloropsis gaditana])

HSP 1 Score: 666.766 bits (1719), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MVKETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNRRSLLSSTAPTSDLSTDRTRGTTPAHGEGTEDHLLLSSREPAPPLRGLSLSRESSAHSSSSTSSHLPLLGSSGPAQKRSRPNEANPCPRPGHLAGASPSPLELLSSRRAGKDEAIAGETQTCLKRSTSASHRALSSTSAGPEANSSLATDMLRFRNEQDKAKYEEWKVSVRAAAANKERKNVKDVTMKNEMKESMGTAVGSAVA 330
            MVKETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNRRSLLSSTAPTSDLSTDRTRGTTPAHGEGTEDHLLLSSREPAPPLRGLSLSRESSAHSSSSTSSHLPLLGSSGPAQKRSRPNEANPCPRPGHLAGASPSPLELLSSRRAGKDEAIAGETQTCLKRSTSASHRALSSTSAGPEANSSLATDMLRFRNEQDKAKYEEWKVSVRAAAANKERKNVKDVTMKNEMKESMGTAVGSAVA
Sbjct:    1 MVKETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNRRSLLSSTAPTSDLSTDRTRGTTPAHGEGTEDHLLLSSREPAPPLRGLSLSRESSAHSSSSTSSHLPLLGSSGPAQKRSRPNEANPCPRPGHLAGASPSPLELLSSRRAGKDEAIAGETQTCLKRSTSASHRALSSTSAGPEANSSLATDMLRFRNEQDKAKYEEWKVSVRAAAANKERKNVKDVTMKNEMKESMGTAVGSAVA 330          
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|470124875|ref|XP_004298434.1| (PREDICTED: origin of replication complex subunit 6 [Fragaria vesca subsp. vesca])

HSP 1 Score: 67.0106 bits (162), Expect = 5.482e-9
Identity = 37/123 (30.08%), Postives = 62/123 (50.41%), Query Frame = 0
Query:    4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSL----QGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGT 122
            E +Y       ++ L +       + A+  G  + +P  ++ L+ Y+ R+ +SL    + G    R      ++V  AF+L AKK K+ VDK +L+ LSG    E S+V  SM++ C D+ GT
Sbjct:   74 EKAYTRSFNSLQNGLGVKNKLDVRELAIQFGCVRIIPFVQKGLSLYKTRFLASLLPSRRAGADFTR-----PVFVAVAFYLCAKKHKLKVDKIKLIELSGTSEAEFSSVSVSMKDLCFDVYGT 191          
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|168032927|ref|XP_001768969.1| (predicted protein [Physcomitrella patens] >gi|162679881|gb|EDQ66323.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 65.855 bits (159), Expect = 1.126e-8
Identity = 49/167 (29.34%), Postives = 84/167 (50.30%), Query Frame = 0
Query:    4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNR--RSLLSS-TAPTSDLSTDRTRGT-----TPAHGEGTEDHLLL 162
            E +Y   L   ++AL L       + A+  G  + +   +R L+ Y+ R+ ++L      +   S+ + +  AAFFL ++K K+ VDK RL+ + GA   E S + ASM + C DLVG   + R  +++ S+    T ++S  R+R T     + A     ED L++
Sbjct:   74 EKAYVRSLTALQNALGLRPKVDVRELAIQFGCIRLIGAVQRVLSLYKQRFVAALPESRRTSADFSRPA-FTAAAFFLCSRKNKLKVDKIRLMEICGASDPEFSNIIASMNDLCFDLVGMEKEKRDPKTIKSNEDLLTVNVSGKRSRDTDEASESDAESIDNEDDLVI 239          
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|694361199|ref|XP_009360345.1| (PREDICTED: origin of replication complex subunit 6 [Pyrus x bretschneideri])

HSP 1 Score: 65.0846 bits (157), Expect = 2.329e-8
Identity = 34/124 (27.42%), Postives = 64/124 (51.61%), Query Frame = 0
Query:    4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNR 127
            E +Y       ++ L +       + A+  G  + +P  ++ L+ Y+ R+ +SL      +   ++  +++  AF+L AKK K+ VDK +L+ L GA   E S+V  SM++ C D+ GT  + +
Sbjct:   74 EKAYTRSYNSMQNGLGVKNKLDVRELAIQFGCVRIIPFVQKALSLYKTRFLASLPASRRASADFTR-PVFIAVAFYLCAKKHKLKVDKLKLIELCGASETEFSSVSTSMKDLCFDVCGTEKEKK 196          
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|552823414|ref|XP_005846350.1| (hypothetical protein CHLNCDRAFT_11567, partial [Chlorella variabilis] >gi|307106001|gb|EFN54248.1| hypothetical protein CHLNCDRAFT_11567, partial [Chlorella variabilis])

HSP 1 Score: 62.7734 bits (151), Expect = 2.840e-8
Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 0
Query:    2 VKETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGTPAKNRRS 129
            V E  YR+     +  L +T+  +A +  +  G     P     LA Y++R+  SL     +  +   + +++ AAF+L A+K K+ VD+ +LL+  G    EL+  CASM   C DLVG   + RR+
Sbjct:   32 VGERVYRNAKAALQKVLGVTSKTTARELCVQFGCAGHEPAVRAALAAYKDRFVRSLPAAQ-QRHVDFGRPVFLAAAFYLVARKKKVAVDRVKLLDPLGVTAAELAQACASMANLCHDLVGCEPRKRRA 158          
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|1208539192|gb|OWM89554.1| (hypothetical protein CDL15_Pgr024302 [Punica granatum])

HSP 1 Score: 64.6994 bits (156), Expect = 3.365e-8
Identity = 37/138 (26.81%), Postives = 65/138 (47.10%), Query Frame = 0
Query:    4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVG--------TPAKNRRSLLSS 133
            E +Y       ++ + +  +    +  +  G  + +PL ++ L+ Y+ R+ SSL      A     + ++   AF+L AKK K+ +DK +L+ + G    E S VC SM++ C D+ G        T  K  R LL +
Sbjct:   74 EKAYNRSFNSLQNGIGVNNTLDIRELGIQFGCVRIIPLVKKGLSLYKERFISSLPASR-RATADFTRPVFTAVAFYLCAKKHKLKIDKLKLIEVCGTSETEFSCVCNSMKDLCFDVFGVAKEKKDPTEVKGNRDLLDA 210          
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|970027519|ref|XP_015075059.1| (PREDICTED: origin of replication complex subunit 6 [Solanum pennellii])

HSP 1 Score: 64.3142 bits (155), Expect = 4.033e-8
Identity = 34/119 (28.57%), Postives = 62/119 (52.10%), Query Frame = 0
Query:    4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGT 122
            E +Y       ++ + +       + A+  G  + +P  ++ L+ Y++R+R+SL      +   S+  ++  AAF+L AKK K+ VDK +L+ L G    E ++V  SM + C D+ GT
Sbjct:   74 EKAYNRSFTSMQNGIGVKNKLDIRELAIQFGCIRLIPFVQKGLSLYKDRFRTSLPPSRRASADFSR-PVFTAAAFYLCAKKHKLKVDKMKLIELCGTSEPEFASVSTSMNDLCFDVFGT 191          
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|657994333|ref|XP_008389471.1| (PREDICTED: origin of replication complex subunit 6 isoform X3 [Malus domestica])

HSP 1 Score: 63.1586 bits (152), Expect = 7.842e-8
Identity = 33/119 (27.73%), Postives = 61/119 (51.26%), Query Frame = 0
Query:    4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGT 122
            E +Y       ++ L +       + A+  G  + +P  ++ L+ Y+ R+ +SL      +   ++  +++  AF+L AKK K+ VDK +L+ L GA   E  +V  SM++ C D+ GT
Sbjct:   74 EKAYTRSYNSMQNGLGVKNKLDVRELAIQFGCVRIIPFVQKALSLYKTRFLASLPASRRASADFTR-PVFIAVAFYLCAKKHKLKVDKLKLIELCGASETEFXSVSTSMKDLCFDVCGT 191          
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|1026094810|ref|XP_016546628.1| (PREDICTED: origin of replication complex subunit 6 [Capsicum annuum])

HSP 1 Score: 63.5438 bits (153), Expect = 8.065e-8
Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 0
Query:   28 QFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGT 122
            + A+  G  + +P  ++ L+ Y++R+RSSL      +   S+  ++  AAF+L AK+ K+ VDK +L+ + G    E + V  SM + C D+ GT
Sbjct:   98 ELAIQFGCIRLIPFVQKGLSLYKDRFRSSLPPSRKASADFSR-PVFTAAAFYLCAKRHKLKVDKMKLIEVCGTSESEFANVSTSMNDLCFDVFGT 191          
BLAST of EWM23984.1 vs. NCBI_GenBank
Match: gi|460386209|ref|XP_004238792.1| (PREDICTED: origin of replication complex subunit 6 [Solanum lycopersicum])

HSP 1 Score: 63.5438 bits (153), Expect = 8.065e-8
Identity = 33/119 (27.73%), Postives = 62/119 (52.10%), Query Frame = 0
Query:    4 ETSYRDVLRRAEHALELTASWSAPQFALVLGGEQAVPLAERTLAEYQNRYRSSLQGGGGEARLLSQQSLYVGAAFFLAAKKLKMTVDKKRLLNLSGAQPHELSAVCASMQEFCADLVGT 122
            E +Y       ++ + +       + A+  G  + +P  ++ L+ Y++R+R+SL      +   S+  ++  AAF+L AK+ K+ VDK +L+ L G    E ++V  SM + C D+ GT
Sbjct:   74 EKAYNRSFTSMQNGIGVKNKLDIRELAIQFGCIRLIPFVQKGLSLYKDRFRTSLPPSRRASADFSR-PVFTAAAFYLCAKRHKLKVDKMKLIELCGTSEPEFASVSTSMNDLCFDVFGT 191          
The following BLAST results are available for this feature:
BLAST of EWM23984.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105270|gb|EWM23984.1|0.000e+0100.00hypothetical protein Naga_100027g18 [Nannochlorops... [more]
gi|470124875|ref|XP_004298434.1|5.482e-930.08PREDICTED: origin of replication complex subunit 6... [more]
gi|168032927|ref|XP_001768969.1|1.126e-829.34predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|694361199|ref|XP_009360345.1|2.329e-827.42PREDICTED: origin of replication complex subunit 6... [more]
gi|552823414|ref|XP_005846350.1|2.840e-831.25hypothetical protein CHLNCDRAFT_11567, partial [Ch... [more]
gi|1208539192|gb|OWM89554.1|3.365e-826.81hypothetical protein CDL15_Pgr024302 [Punica grana... [more]
gi|970027519|ref|XP_015075059.1|4.033e-828.57PREDICTED: origin of replication complex subunit 6... [more]
gi|657994333|ref|XP_008389471.1|7.842e-827.73PREDICTED: origin of replication complex subunit 6... [more]
gi|1026094810|ref|XP_016546628.1|8.065e-832.63PREDICTED: origin of replication complex subunit 6... [more]
gi|460386209|ref|XP_004238792.1|8.065e-827.73PREDICTED: origin of replication complex subunit 6... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6712rna6712Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications