EWM23972.1, cds6693 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23972.1 vs. NCBI_GenBank
Match: gi|585105258|gb|EWM23972.1| (endonuclease iii [Nannochloropsis gaditana]) HSP 1 Score: 775.007 bits (2000), Expect = 0.000e+0 Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0 Query: 1 MRFTTLNLVKFGGATICTINMFRSSLAFSPKIHVETRHVAPTLPIKPWPTRWHQSLRKERRQRWFSSRGIALLSVEAAAEEESLAATTAVPSEDAAPVARGKKKNTLPDIAPCSTGHEGKKSGGAKSPRSKKAALPPFIPNPRWRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTGDIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYSASAE 374 MRFTTLNLVKFGGATICTINMFRSSLAFSPKIHVETRHVAPTLPIKPWPTRWHQSLRKERRQRWFSSRGIALLSVEAAAEEESLAATTAVPSEDAAPVARGKKKNTLPDIAPCSTGHEGKKSGGAKSPRSKKAALPPFIPNPRWRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTGDIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYSASAE Sbjct: 1 MRFTTLNLVKFGGATICTINMFRSSLAFSPKIHVETRHVAPTLPIKPWPTRWHQSLRKERRQRWFSSRGIALLSVEAAAEEESLAATTAVPSEDAAPVARGKKKNTLPDIAPCSTGHEGKKSGGAKSPRSKKAALPPFIPNPRWRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTGDIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYSASAE 374
BLAST of EWM23972.1 vs. NCBI_GenBank
Match: gi|325193803|emb|CCA28012.1| (conserved unknown protein putative [Albugo laibachii Nc14]) HSP 1 Score: 243.432 bits (620), Expect = 1.162e-74 Identity = 127/236 (53.81%), Postives = 150/236 (63.56%), Query Frame = 0 Query: 140 PNPRWRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHM-RFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTGD----IPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYS 370 PN W + L IREMR A VD G K P H+ RF LIS+MLSSQT D +N AM RL D +T+E + + E+ + Q I PVSFY KA +I KV +ILK + + D IP T E L+ LPGVGPKMA LV W + VGICVDTHVHRI NRLGW +TWN KN KAQ+PEKTRK LE+W+P EHW +N LLVG GQ C A PKC DC L ++CPS S Sbjct: 82 PNVNWNEMLLKIREMRATMKAEVDEDGSETFYDTK--HPAHVARFHVLISAMLSSQTKDPINAAAMRRLLDN-ELTVESMIKIKEDKLAQIIYPVSFYRNKAKSIKKVASILKERESEDGICDIPETVENLVALPGVGPKMAYLVMNVAWNKPVGICVDTHVHRICNRLGWVSTWNKKNPKAQDPEKTRKELEAWLPSEHWDSINQLLVGFGQTICHARQPKCKDCALQSICPSAS 314
BLAST of EWM23972.1 vs. NCBI_GenBank
Match: gi|568025197|gb|ETL99216.1| (hypothetical protein, variant 1 [Phytophthora parasitica]) HSP 1 Score: 232.261 bits (591), Expect = 2.061e-70 Identity = 118/236 (50.00%), Postives = 149/236 (63.14%), Query Frame = 0 Query: 144 WRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTG------DIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYSASA 373 W++ L I++MR A VD +GC E+ ++ P RF LI++M+SSQT D VN AMGRL G+T+E + + + + Q I+PV F+ KA I + +IL Q DIP T+E L+ LPGVGPKMATLV W VGICVDTHVHRISNRL W TWN N K+QNPEKTR LE W+PKEHW +NPLLVG GQ C PKC +CK+ +CPS ++SA Sbjct: 78 WKEILHGIQQMRAKKDAEVDKYGC-EVFFDESFPPHVCRFHVLIAAMMSSQTKDPVNAAAMGRLIKH-GLTVESMLEIELQELAQLIRPVGFFNHKAKYIKQTASILTKQAEAEGKEVVDIPNTYEGLIALPGVGPKMATLVMNSAWQNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGICPSANSSA 311
BLAST of EWM23972.1 vs. NCBI_GenBank
Match: gi|675184961|ref|XP_008901365.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|567967477|gb|ETK92652.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567995953|gb|ETL46079.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568055620|gb|ETM52364.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568098587|gb|ETN13314.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310]) HSP 1 Score: 232.261 bits (591), Expect = 4.031e-70 Identity = 118/236 (50.00%), Postives = 149/236 (63.14%), Query Frame = 0 Query: 144 WRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTG------DIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYSASA 373 W++ L I++MR A VD +GC E+ ++ P RF LI++M+SSQT D VN AMGRL G+T+E + + + + Q I+PV F+ KA I + +IL Q DIP T+E L+ LPGVGPKMATLV W VGICVDTHVHRISNRL W TWN N K+QNPEKTR LE W+PKEHW +NPLLVG GQ C PKC +CK+ +CPS ++SA Sbjct: 100 WKEILHGIQQMRAKKDAEVDKYGC-EVFFDESFPPHVCRFHVLIAAMMSSQTKDPVNAAAMGRLIKH-GLTVESMLEIELQELAQLIRPVGFFNHKAKYIKQTASILTKQAEAEGKEVVDIPNTYEGLIALPGVGPKMATLVMNSAWQNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGICPSANSSA 333
BLAST of EWM23972.1 vs. NCBI_GenBank
Match: gi|566029882|gb|ETI52793.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|570333521|gb|ETO81469.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570993189|gb|ETP50580.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297]) HSP 1 Score: 231.491 bits (589), Expect = 6.984e-70 Identity = 118/236 (50.00%), Postives = 149/236 (63.14%), Query Frame = 0 Query: 144 WRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTG------DIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYSASA 373 W++ L I++MR A VD +GC E+ ++ P RF LI++M+SSQT D VN AMGRL G+T+E + + + + Q I+PV F+ KA I + +IL Q DIP T+E L+ LPGVGPKMATLV W VGICVDTHVHRISNRL W TWN N K+QNPEKTR LE W+PKEHW +NPLLVG GQ C PKC +CK+ +CPS ++SA Sbjct: 100 WKEILHGIQQMRAKKDAEVDKYGC-EVFFDESFPPPVCRFHVLIAAMMSSQTKDPVNAAAMGRLIKH-GLTVESMLEIELQELAQLIRPVGFFNHKAKYIKQTASILTKQAEAEGKEVVDIPNTYEGLIALPGVGPKMATLVMNSAWQNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGICPSANSSA 333
BLAST of EWM23972.1 vs. NCBI_GenBank
Match: gi|570957631|gb|ETP22610.1| (hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 231.106 bits (588), Expect = 9.443e-70 Identity = 117/236 (49.58%), Postives = 149/236 (63.14%), Query Frame = 0 Query: 144 WRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTG------DIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYSASA 373 W++ L I++MR A VD +GC E+ ++ P RF LI++M+SSQT D VN AMGRL G+T+E + + + + Q I+PV F+ KA I + +IL Q DIP T+E L+ LPGVGPKMATLV W VGICVDTHVHRISNRL W TWN N K+QNPEKTR LE W+P+EHW +NPLLVG GQ C PKC +CK+ +CPS ++SA Sbjct: 100 WKEILHGIQQMRAKKDAEVDKYGC-EVFFDESFPPHVCRFHVLIAAMMSSQTKDPVNAAAMGRLIKH-GLTVESMLEIELQELAQLIRPVGFFNHKAKYIKQTASILTKQAEAEGKEVVDIPNTYEGLIALPGVGPKMATLVMNSAWQNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPREHWGPINPLLVGFGQTICLPRGPKCSECKIRGICPSANSSA 333
BLAST of EWM23972.1 vs. NCBI_GenBank
Match: gi|1040917220|ref|XP_017220870.1| (PREDICTED: endonuclease III homolog 1, chloroplastic-like [Daucus carota subsp. sativus]) HSP 1 Score: 232.261 bits (591), Expect = 1.121e-69 Identity = 132/310 (42.58%), Postives = 170/310 (54.84%), Query Frame = 0 Query: 77 AAAEEESLAATTAVPSEDAAPVARGKKKNTLPDIAPCSTGHEGKKSGGAKSPRSKKAALPPFIPNP-------------RWRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTGDIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYSASA 373 +A EEE L + R +K + LPDI E KK+ R+ ++ +PN W LE IR+MR APVD GC + G + P+ RF LIS++LSSQT D VN A+ RL + +T + LE E+ I I PV FYT KA N+ KV I ++Y GDIP T E+L+QLPG+GPKMA LV GW + GICVDTHVHRI NRLGW + N K ++PE+TR+ LE W+PKE W +NPLLVG GQ C + P+CG C + +CPS A Sbjct: 55 SAEEEEKLQPQQPI---------RHQKISGLPDIE----DFEYKKTSKISELRNCESTSGSDVPNAGVFPILRTAKPPGNWAKVLEGIRKMRSFEDAPVDSMGCEKAG--SSLPPKERRFAVLISALLSSQTKDHVNHGAIQRLLENNLLTADALEKANEDTIKSMIYPVGFYTRKASNMKKVANICLSKYDGDIPSTLEDLLQLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSR-KGTNQKTKSPEETRESLERWLPKEEWVPINPLLVGFGQTICTPLRPQCGRCSIVDLCPSAYKEA 348
BLAST of EWM23972.1 vs. NCBI_GenBank
Match: gi|1173960388|gb|OQS06523.1| (endonuclease III 1 [Thraustotheca clavata]) HSP 1 Score: 230.335 bits (586), Expect = 1.881e-69 Identity = 114/243 (46.91%), Postives = 148/243 (60.91%), Query Frame = 0 Query: 128 PRSKKAALPPFIPNPRWRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTGDIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYS 370 P K+ A+P W + + I MR TA VD GC + P RF L++SMLSSQT D V AM RL + G+T+E + A + + Q ++PV F+ KA + K C IL+ QY DIP TF+EL+ LPGVGPKMA L + W + VGICVD HVHRISNRLGW TWN +N K+Q+PEKTRK LE W+P + W +N +LVG GQ+ C + P+C DC + +CPS S Sbjct: 89 PIKKQKAVPEH-----WEEVWDGIAAMRAQKTAAVDSQGCESFNDL-SLEPNVRRFHVLVASMLSSQTKDPVTAAAMERLKEH-GLTVENILATEKAKLAQILRPVGFFNNKATYLHKTCTILRDQYNSDIPSTFDELIALPGVGPKMAHLTMSAAWEKTVGICVDVHVHRISNRLGWVKTWNKQNPKSQDPEKTRKELEDWLPYDRWNPINAMLVGFGQEICFPVNPRCSDCTVRHLCPSAS 324
BLAST of EWM23972.1 vs. NCBI_GenBank
Match: gi|953498679|emb|CEG39729.1| (endonuclease iii--gpd superfamily base excision dna repair [Plasmopara halstedii]) HSP 1 Score: 229.95 bits (585), Expect = 1.978e-69 Identity = 120/236 (50.85%), Postives = 147/236 (62.29%), Query Frame = 0 Query: 144 WRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAIL--KTQYTG----DIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKLLESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYSASA 373 WR+ L I +MR A VD FGC E K P RF LI++MLSSQT D VN AM RL G+++E + + + + I+PV F+ KA I + +IL K + G DIP T+E L+ LPGVGPKMATLV W VGICVDTHVHRISNRL W TWN KN K+Q+PEKTR LE W+PKEHW +NPLLVG GQ C PKC +CK+ +CPS ++SA Sbjct: 89 WRELLRGIEQMRVTKDAEVDKFGC-ETFFIKGLPPHVCRFHVLIAAMLSSQTKDPVNAAAMDRLIKH-GLSVESMLEIDVQKLALLIRPVGFFNLKAKYIKQTASILTKKAEEDGKDFVDIPNTYEALIALPGVGPKMATLVMTCAWKTTVGICVDTHVHRISNRLKWVQTWNTKNPKSQDPEKTRAELEDWLPKEHWGTINPLLVGFGQTICLPRGPKCSECKIRGICPSANSSA 322
BLAST of EWM23972.1 vs. NCBI_GenBank
Match: gi|568025196|gb|ETL99215.1| (hypothetical protein L917_03885 [Phytophthora parasitica]) HSP 1 Score: 228.024 bits (580), Expect = 1.067e-68 Identity = 118/241 (48.96%), Postives = 150/241 (62.24%), Query Frame = 0 Query: 144 WRDQLEIIREMRKDATAPVDLFGCSELGRRKATSPEHMRFQTLISSMLSSQTTDLVNEKAMGRLFDACGITIEGLEALGEEGIVQAIKPVSFYTAKAGNILKVCAILKTQYTG------DIPRTFEELMQLPGVGPKMATLVCAYGWGEIVGICVDTHVHRISNRLGWANTWNFKNHKAQNPEKTRKL-----LESWMPKEHWKEVNPLLVGLGQQTCRAIAPKCGDCKLAAVCPSYSASA 373 W++ L I++MR A VD +GC E+ ++ P RF LI++M+SSQT D VN AMGRL G+T+E + + + + Q I+PV F+ KA I + +IL Q DIP T+E L+ LPGVGPKMATLV W VGICVDTHVHRISNRL W TWN N K+QNPEKTR + LE W+PKEHW +NPLLVG GQ C PKC +CK+ +CPS ++SA Sbjct: 78 WKEILHGIQQMRAKKDAEVDKYGC-EVFFDESFPPHVCRFHVLIAAMMSSQTKDPVNAAAMGRLIKH-GLTVESMLEIELQELAQLIRPVGFFNHKAKYIKQTASILTKQAEAEGKEVVDIPNTYEGLIALPGVGPKMATLVMNSAWQNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAVIETQELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGICPSANSSA 316 The following BLAST results are available for this feature:
BLAST of EWM23972.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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