EWM23970.1, cds6691 (CDS) Nannochloropsis gaditana

Overview
NameEWM23970.1
Unique Namecds6691
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:311167..311348 -
Alignment locationCM002469.1:310955..311076 -
Alignment locationCM002469.1:310547..310734 -
Alignment locationCM002469.1:310284..310397 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23970.1
Productglutathione peroxidase
Orig transcript idgnl|cribi|Naga_100027g13.148.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:311167..311348 -
CM002469.1supercontigCM002469.1:310955..311076 -
CM002469.1supercontigCM002469.1:310547..310734 -
CM002469.1supercontigCM002469.1:310284..310397 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0042221response to chemical
GO:0008152metabolic process
GO:0055114oxidation-reduction process
GO:0006979response to oxidative stress
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004602glutathione peroxidase activity
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR000889Glutathione_peroxidase
Homology
BLAST of EWM23970.1 vs. NCBI_GenBank
Match: gi|585105256|gb|EWM23970.1| (glutathione peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 410.994 bits (1055), Expect = 3.741e-145
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query:    1 MLSGLFSSKPTCLAFKVLFLTSLASSSAFALPRTLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALRDAASKEL 201
            MLSGLFSSKPTCLAFKVLFLTSLASSSAFALPRTLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALRDAASKEL
Sbjct:    1 MLSGLFSSKPTCLAFKVLFLTSLASSSAFALPRTLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALRDAASKEL 201          
BLAST of EWM23970.1 vs. NCBI_GenBank
Match: gi|568015051|gb|ETL89228.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|568045352|gb|ETM42508.1| hypothetical protein, variant [Phytophthora parasitica] >gi|570323251|gb|ETO71199.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|970633382|gb|KUF79065.1| Glutathione peroxidase [Phytophthora nicotianae])

HSP 1 Score: 174.096 bits (440), Expect = 1.529e-51
Identity = 83/161 (51.55%), Postives = 110/161 (68.32%), Query Frame = 0
Query:   34 TLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALR 194
            +  DF++ D  G+  S+  +   PV+L+VNVAS CGYTD NYR+LQ L EKY D+G  VL  P N+FGGQEPG+  +ILKFTKEKY VTFP+F+K+ VNG  A  L+K+LK    K     + DI+WNFTKFL+VN  P KR+    +P++ E +I+ AL 
Sbjct:   24 SFLDFTIPDLNGRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLKT---KLDGFVTNDIKWNFTKFLIVNHEPFKRYGTTTSPSEIENDIVHALH 181          
BLAST of EWM23970.1 vs. NCBI_GenBank
Match: gi|675199393|ref|XP_008908581.1| (hypothetical protein PPTG_13883 [Phytophthora parasitica INRA-310] >gi|568091255|gb|ETN06079.1| hypothetical protein PPTG_13883 [Phytophthora parasitica INRA-310] >gi|570947062|gb|ETP12319.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570979553|gb|ETP40474.1| hypothetical protein F442_12194 [Phytophthora parasitica P10297])

HSP 1 Score: 174.096 bits (440), Expect = 1.576e-51
Identity = 83/161 (51.55%), Postives = 110/161 (68.32%), Query Frame = 0
Query:   34 TLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALR 194
            +  DF++ D  G+  S+  +   PV+L+VNVAS CGYTD NYR+LQ L EKY D+G  VL  P N+FGGQEPG+  +ILKFTKEKY VTFP+F+K+ VNG  A  L+K+LK    K     + DI+WNFTKFL+VN  P KR+    +P++ E +I+ AL 
Sbjct:   25 SFLDFTIPDLNGRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLKT---KLDGFVTNDIKWNFTKFLIVNHEPFKRYGTTTSPSEIENDIVHALH 182          
BLAST of EWM23970.1 vs. NCBI_GenBank
Match: gi|566019694|gb|ETI42605.1| (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 173.711 bits (439), Expect = 2.262e-51
Identity = 83/161 (51.55%), Postives = 110/161 (68.32%), Query Frame = 0
Query:   34 TLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALR 194
            +  DF++ D  G+  S+  +   PV+L+VNVAS CGYTD NYR+LQ L EKY D+G  VL  P N+FGGQEPG+  +ILKFTKEKY VTFP+F+K+ VNG  A  L+K+LK    K     + DI+WNFTKFL+VN  P KR+    +P++ E +I+ AL 
Sbjct:   24 SFLDFTIPDLNGRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLKK---KLDGFVTNDIKWNFTKFLIVNHEPFKRYGTTTSPSEIENDIVHALH 181          
BLAST of EWM23970.1 vs. NCBI_GenBank
Match: gi|567957002|gb|ETK82611.1| (hypothetical protein L915_12002 [Phytophthora parasitica] >gi|567985662|gb|ETL36001.1| hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 173.711 bits (439), Expect = 2.332e-51
Identity = 83/161 (51.55%), Postives = 110/161 (68.32%), Query Frame = 0
Query:   34 TLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALR 194
            +  DF++ D  G+  S+  +   PV+L+VNVAS CGYTD NYR+LQ L EKY D+G  VL  P N+FGGQEPG+  +ILKFTKEKY VTFP+F+K+ VNG  A  L+K+LK    K     + DI+WNFTKFL+VN  P KR+    +P++ E +I+ AL 
Sbjct:   25 SFLDFTIPDLNGRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLKK---KLDGFVTNDIKWNFTKFLIVNHEPFKRYGTTTSPSEIENDIVHALH 182          
BLAST of EWM23970.1 vs. NCBI_GenBank
Match: gi|325189753|emb|CCA24234.1| (glutathione peroxidase putative [Albugo laibachii Nc14])

HSP 1 Score: 171.014 bits (432), Expect = 1.216e-50
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 0
Query:   28 AFALPRTLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALRDAAS 198
             +A  ++ YDF +KD  G+   L  Y+  PV L+VNVAS CGY D NY++LQ L  KY D GL +LA P N+F  QE  S+ EIL F +++Y VTFP+F K+LVNGP A   +K+L   T K S   + DI+WNFTKFL+V G+PVKR+  +  P D + +I +AL +AA+
Sbjct:   14 VYAESQSAYDFHVKDIKGEPVHLLTYRKSPVWLVVNVASACGYADQNYKELQTLYTKYQDQGLVILAFPCNQFNSQESKSNEEILSFVQKRYGVTFPLFEKILVNGPNADPFFKFL---TKKQSGFITDDIKWNFTKFLIVQGVPVKRYGTSTRPLDIDSDIQEALANAAT 181          
BLAST of EWM23970.1 vs. NCBI_GenBank
Match: gi|953487033|emb|CEG49095.1| (RxLR-like protein [Plasmopara halstedii])

HSP 1 Score: 169.474 bits (428), Expect = 1.085e-49
Identity = 87/185 (47.03%), Postives = 118/185 (63.78%), Query Frame = 0
Query:   17 VLFLTSLASSSAFAL-------PRTLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALR 194
            +L L  L  + AF L         +  DFS+ +  G   S+  +   PV+L+VNVAS+CGYTD NYR+LQ L EKY D+G  VL  P N+FGGQEPG+  +ILKFT+EKY VTFP+FSK+ VNG  A  L+ +LK +        + DI+WNFTKFL+VN  P  R+  + +P + E +I+QAL+
Sbjct:    1 MLSLVVLLVTIAFGLLDGSKSEETSFLDFSVPNLQGHEVSMREFHAFPVILVVNVASQCGYTDKNYRELQELYEKYHDEGFMVLGFPCNQFGGQEPGTADDILKFTQEKYHVTFPLFSKVDVNGENAHPLFTYLKKQL---DGYITNDIKWNFTKFLIVNHEPFMRYGTSTSPLEIESDIIQALQ 182          
BLAST of EWM23970.1 vs. NCBI_GenBank
Match: gi|1173943815|gb|OQR92622.1| (glutathione peroxidase [Achlya hypogyna])

HSP 1 Score: 164.851 bits (416), Expect = 3.115e-48
Identity = 83/191 (43.46%), Postives = 121/191 (63.35%), Query Frame = 0
Query:   12 CLAFKVL-FLTSLASSSAFALPRTLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALRDAASKEL 201
            C+   VL  +T++ SS++F      +DF +K       SLS Y     +L+VNVAS CG+TDSNYR+LQ L  KY D GL++L  P N+FG QEPGS A+I+ +T+  Y VTFP+F K+ VNG  A+ ++K+L   T   + S + DI+WNFTKFL+ +G P  R+A   +P++ E  I++ L   + +EL
Sbjct:    3 CVVVCVLSMVTAVVSSTSF------FDFVVKGEDNVDVSLSTYAHNKAILVVNVASACGFTDSNYRELQSLYTKYHDQGLEILGFPCNQFGAQEPGSYADIVAYTQRNYDVTFPIFQKVDVNGDNAAPVFKYL---TEALTGSFTNDIKWNFTKFLIAHGRPYARYATTTSPSELESTIVRILTTNSHEEL 184          
BLAST of EWM23970.1 vs. NCBI_GenBank
Match: gi|1173955513|gb|OQS02466.1| (glutathione peroxidase [Thraustotheca clavata])

HSP 1 Score: 162.54 bits (410), Expect = 2.335e-47
Identity = 81/182 (44.51%), Postives = 115/182 (63.19%), Query Frame = 0
Query:   20 LTSLASSSAFALPRTLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALRDAASKEL 201
            + ++A +    + ++  DF +K    +   LS+Y     +L+VNVAS CG+T+SNY++LQ L  KY + GL++LA P N+FGGQEPGS  EIL FT +KY VTFP+F K+ VNG  A  L+K+LKAE    + + + DI+WNFTKFL+  G P KR+A   +P   E  I+  L     +EL
Sbjct:    1 MLAMAMTMKMVMAKSFLDFVVKGQDNEDVPLSLYSKSKAILVVNVASACGFTNSNYKELQTLYNKYHEKGLEILAFPCNQFGGQEPGSYEEILAFT-QKYEVTFPIFQKIDVNGDNADPLFKYLKAEL---TGTITNDIKWNFTKFLIAYGNPYKRYATTTSPLGIEKAIVHILDSQNHEEL 178          
BLAST of EWM23970.1 vs. NCBI_GenBank
Match: gi|673029522|ref|XP_008868722.1| (hypothetical protein H310_05709 [Aphanomyces invadans] >gi|574475117|gb|ETW02117.1| hypothetical protein H310_05709 [Aphanomyces invadans])

HSP 1 Score: 162.925 bits (411), Expect = 3.389e-47
Identity = 79/164 (48.17%), Postives = 104/164 (63.41%), Query Frame = 0
Query:   34 TLYDFSLKDGTGKTQSLSVYKDKPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAHNQAPNDFEGEILQALRDAA 197
            ++YDF+LK   G+   LS Y   PV+L+VNVAS CG+TD NYR LQ   ++Y   G +++A+PSN+FG QEPG+  +I++F K  Y V F +F K+ VNGP A  LY WLKA  P D      D+ WNF KFL+V+G P  R AHN   +  E +IL AL   A
Sbjct:   21 SIYDFTLKTANGEDYPLSNYDHTPVILVVNVASECGFTDINYRALQKYYDEYHQFGFEIVAVPSNQFGAQEPGTYDDIVQFAKTNYNVGFRIFDKVDVNGPNAHPLYTWLKANVPDDDGR---DVAWNFEKFLVVDGKPWNRVAHNVNLDKVEDKILYALAHEA 181          
The following BLAST results are available for this feature:
BLAST of EWM23970.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105256|gb|EWM23970.1|3.741e-145100.00glutathione peroxidase [Nannochloropsis gaditana][more]
gi|568015051|gb|ETL89228.1|1.529e-5151.55hypothetical protein, variant [Phytophthora parasi... [more]
gi|675199393|ref|XP_008908581.1|1.576e-5151.55hypothetical protein PPTG_13883 [Phytophthora para... [more]
gi|566019694|gb|ETI42605.1|2.262e-5151.55hypothetical protein, variant [Phytophthora parasi... [more]
gi|567957002|gb|ETK82611.1|2.332e-5151.55hypothetical protein L915_12002 [Phytophthora para... [more]
gi|325189753|emb|CCA24234.1|1.216e-5048.54glutathione peroxidase putative [Albugo laibachii ... [more]
gi|953487033|emb|CEG49095.1|1.085e-4947.03RxLR-like protein [Plasmopara halstedii][more]
gi|1173943815|gb|OQR92622.1|3.115e-4843.46glutathione peroxidase [Achlya hypogyna][more]
gi|1173955513|gb|OQS02466.1|2.335e-4744.51glutathione peroxidase [Thraustotheca clavata][more]
gi|673029522|ref|XP_008868722.1|3.389e-4748.17hypothetical protein H310_05709 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6707rna6707Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications