EWM30000.1, cds669 (CDS) Nannochloropsis gaditana

Overview
NameEWM30000.1
Unique Namecds669
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:124694..124882 +
Alignment locationCM002456.1:125077..125211 +
Alignment locationCM002456.1:125435..125537 +
Alignment locationCM002456.1:125702..125843 +
Alignment locationCM002456.1:125962..126046 +
Alignment locationCM002456.1:126294..126455 +
Alignment locationCM002456.1:126600..126719 +
Alignment locationCM002456.1:126811..126969 +
Alignment locationCM002456.1:127039..127137 +
Alignment locationCM002456.1:127274..127318 +
Alignment locationCM002456.1:127572..127675 +
Alignment locationCM002456.1:127916..128084 +
Alignment locationCM002456.1:128188..128436 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30000.1
Producttranscription elongation factor spt6
Orig transcript idgnl|cribi|Naga_100425g5.7071.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:124694..124882 +
CM002456.1supercontigCM002456.1:125077..125211 +
CM002456.1supercontigCM002456.1:125435..125537 +
CM002456.1supercontigCM002456.1:125702..125843 +
CM002456.1supercontigCM002456.1:125962..126046 +
CM002456.1supercontigCM002456.1:126294..126455 +
CM002456.1supercontigCM002456.1:126600..126719 +
CM002456.1supercontigCM002456.1:126811..126969 +
CM002456.1supercontigCM002456.1:127039..127137 +
CM002456.1supercontigCM002456.1:127274..127318 +
CM002456.1supercontigCM002456.1:127572..127675 +
CM002456.1supercontigCM002456.1:127916..128084 +
CM002456.1supercontigCM002456.1:128188..128436 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0032784regulation of DNA-templated transcription, elongation
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR017072TF_Spt6
IPR023097Tex_RuvX-like_dom
IPR027999Spt6_dom
IPR012340NA-bd_OB-fold
IPR000980SH2
Homology
BLAST of EWM30000.1 vs. NCBI_GenBank
Match: gi|585112611|gb|EWM30000.1| (transcription elongation factor spt6 [Nannochloropsis gaditana])

HSP 1 Score: 1211.44 bits (3133), Expect = 0.000e+0
Identity = 586/586 (100.00%), Postives = 586/586 (100.00%), Query Frame = 0
Query:    1 MFTSFSPLAVPFVHFLKVNLLDNTRIHPECYLTHEWVGKVIRDAMEQADPTMGINELVRLVMQDSFKILLATLCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTARDWPRPPSLPPLDRHFDEARALKEYEERRRKIEEKVRLAKEGKLRLSRRQRKVDDERWRTVNHLEAEKVLKQQGKVGEWLFRPSGSGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSFRNNTFRSCDEVSDYFKEHFRDAVSLSSSSTSTAMPPTDSSTLAPAPTSRPPSGCPPMRIIIPLVPKQACPLPFTLFLEARLCPRSNSNSNSNYSRQHHRPGVLVGSENPHAGHCVLRKEKRRNEEELPVDQDPI 586
            MFTSFSPLAVPFVHFLKVNLLDNTRIHPECYLTHEWVGKVIRDAMEQADPTMGINELVRLVMQDSFKILLATLCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTARDWPRPPSLPPLDRHFDEARALKEYEERRRKIEEKVRLAKEGKLRLSRRQRKVDDERWRTVNHLEAEKVLKQQGKVGEWLFRPSGSGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSFRNNTFRSCDEVSDYFKEHFRDAVSLSSSSTSTAMPPTDSSTLAPAPTSRPPSGCPPMRIIIPLVPKQACPLPFTLFLEARLCPRSNSNSNSNYSRQHHRPGVLVGSENPHAGHCVLRKEKRRNEEELPVDQDPI
Sbjct:    1 MFTSFSPLAVPFVHFLKVNLLDNTRIHPECYLTHEWVGKVIRDAMEQADPTMGINELVRLVMQDSFKILLATLCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTARDWPRPPSLPPLDRHFDEARALKEYEERRRKIEEKVRLAKEGKLRLSRRQRKVDDERWRTVNHLEAEKVLKQQGKVGEWLFRPSGSGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSFRNNTFRSCDEVSDYFKEHFRDAVSLSSSSTSTAMPPTDSSTLAPAPTSRPPSGCPPMRIIIPLVPKQACPLPFTLFLEARLCPRSNSNSNSNYSRQHHRPGVLVGSENPHAGHCVLRKEKRRNEEELPVDQDPI 586          
BLAST of EWM30000.1 vs. NCBI_GenBank
Match: gi|553180884|ref|XP_005853476.1| (transcription elongation factor spt6 [Nannochloropsis gaditana CCMP526] >gi|422295585|gb|EKU22884.1| transcription elongation factor spt6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 818.92 bits (2114), Expect = 0.000e+0
Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 0
Query:   17 KVNLLDNTRIHPECYLTHEWVGKVIRDAMEQADPTMGINELVRLVMQDSFKILLATLCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTARDWPRPPSLPPLDRHFDEARALKEYEERRRKIEEKVRLAKEGKLRLSRRQRKVDDERWRTVNHLEAEKVLKQQGKVGEWLFRPSGSGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQ 413
            KVNLLDNTRIHPECYLTHEWVGKVIRDAMEQADPTMGINELVRLVMQDSFKILLATLCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTARDWPRPPSLPPLDRHFDEARALKEYEERRRKIEEKVRLAKEGKLRLSRRQRKVDDERWRTVNHLEAEKVLKQQGKVGEWLFRPSGSGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQ
Sbjct:  829 KVNLLDNTRIHPECYLTHEWVGKVIRDAMEQADPTMGINELVRLVMQDSFKILLATLCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTARDWPRPPSLPPLDRHFDEARALKEYEERRRKIEEKVRLAKEGKLRLSRRQRKVDDERWRTVNHLEAEKVLKQQGKVGEWLFRPSGSGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQ 1225          
BLAST of EWM30000.1 vs. NCBI_GenBank
Match: gi|219124143|ref|XP_002182370.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406331|gb|EEC46271.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 212.231 bits (539), Expect = 5.659e-55
Identity = 156/520 (30.00%), Postives = 267/520 (51.35%), Query Frame = 0
Query:   21 LDNTRIHPECYLTHEWVGKVIRDAMEQADPTM---GINELVRLVMQDSF----KILLAT---------LCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTAR--DWPRPPSLPPLDRHFDEARALKEYEERRRKIE---EKVRLA--------KEG---KLRLSRRQRKVDDE-RWRTVNHLEAEKVLKQQGK--VGEWLFRPS--GSGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSFRNNTFRSCDEVSDYFKEHFRDAVSLSSSSTSTAMPPTDSSTLAPAPTSRPP 503
            LD+TR+HP+ YL H W  K+  DA+E+ D         + +R VM++S     ++ +AT         L    +   P   +      D++  L+LE FAN +E+T  G+ +  ++ IK E R P+ DPR P   +S D+LF L++GE+D +LR G  VTG+V +  +  +RV+L +  +  ++      +   +   E +V     V  V+T ++K  ++V +S   ED       W RP SLPP+D HFD   A K  E+  ++ E   E ++L+        +EG   + R+ R  R+      +R     E  + LK+ G   VGE L RPS   S ++++ W+  E  +  + V EE+KE   ++G  L V+ + Y  +D+++ +YI PMND ++ + +HRKF  + +++++A+L A KK++P  + Y         G   +  +        P+ ++P G ++ +NTF S D + + FK++ R AV    S    + P T + ++AP   S+PP
Sbjct: 1342 LDDTRLHPDVYLRHNWAIKIAFDALEREDSKTKDAASIKALRDVMENSHHEVERLFMATKSEWEMNYGLTFNIKDWDPRVNVPKDMWRDKVEELDLEAFANMIEDTKLGRWHSHLEMIKWEFRLPYVDPRKPMEPVSSDRLFSLITGESDQSLRPGKEVTGKVVRNGDFGSRVKL-EGEIPAFIPLRNLSDEHVET-AEDIVAAGQIVTAVITMVKKEHMTVDMSLKMEDFRKNPSSWERPLSLPPIDVHFDLVAAAKIEEDNNKRREAHLEALQLSLGTKGADGEEGTGQRKRIGRVARRACTHPAFRNAKTDEITRELKEGGAAMVGEALIRPSSKNSDALAIHWVVKEGSIKVVEVIEEDKETEASIGNTLKVKSQSYGSIDELLGRYIAPMNDFVEELVNHRKFLDIPEDELDAKLVAEKKENPKSIPYSACWMENHAGYASLRFVSSTNARSHPIGISPTGYTWGSNTFPSLDRLINAFKKNPRGAV---KSKPPISTPATTAPSVAP---SKPP 1853          
BLAST of EWM30000.1 vs. NCBI_GenBank
Match: gi|1210532192|dbj|GAX09258.1| (transcription elongation factor SPT6 [Fistulifera solaris])

HSP 1 Score: 210.69 bits (535), Expect = 1.676e-54
Identity = 160/528 (30.30%), Postives = 258/528 (48.86%), Query Frame = 0
Query:   21 LDNTRIHPECYLTHEWVGKVIRDAMEQADPTM---GINELVRLVMQDSF----KILLATLCPPSEQGRPIDRLLV----AEIP-----DELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGY-LHRSRYPNMQRDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTAR--DWPRPPSLPPLDRHFDEARALKEYEERRRKIEEKV--------RLAKE-GKLRLSRRQ---RKVDDERWRTVNHLEAEKVLKQQGK--VGEWLFRPSG--SGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSFRNNTFRSCDEVSDYFKEHFRDAVSLSSSSTSTAMPPTDSSTLAPAPTSRPPS----GCPPM 509
            LD TR+HP+ Y+ + W  K+  DA+E+ DP        + VR VM DS     ++  AT         P   +        +P     D++  L+L+ FAN +E  G+G+ +  ++ IK E R P  DPR P   +S DK+F L++GETD +LR G  +TG+V +  +  +RV+L+  +     L      +++   DF   V V   V  VVTE++K  ++V +S   ED   +   W RP SL  LD  FD   A K  ++  +K +  V        R   + G LR  +R+   R      +R   + E E+ L   G   VGE L RPS   S S+++ W+  E ++  I V EE KE   ++G  L ++   +  +D+++ ++I PMND ++ + SHRKF  +A+E+V+A+L+  KK +P  + Y        PG   +  +         + ++P+G S+ + T+ + D + D FK++ R +V       S   PP      AP   SR P+    G  P+
Sbjct: 1310 LDGTRLHPDVYIRNNWASKIAFDALEREDPKTKESAAIKAVRDVMDDSHLEVDRLFKATKAEWERHYGPTFNIKEWDPRVNVPHDQWRDKVEELDLDTFANMIEQNGHGRWHTHLEMIKWEFRLPAADPRKPLEPLSGDKVFHLITGETDQSLRPGKEITGKVIRNGDFGSRVKLEGDIPAFIPLRNLSDEHVESADDF---VSVGQIVTAVVTEVKKDHMTVDMSLKLEDFRKKPSSWERPTSLFSLDECFDVQAANKIEDDNAKKRDAHVDALLVSLGRTGDDVGGLRQGKRRVVRRACTHPAFRNAKNKEVERELLDGGSQMVGEALIRPSNKSSDSLAIHWVVKEGMIKVIEVLEENKETDASIGNILKIKDDAFGSIDELLGRFIAPMNDYVEELVSHRKFLDLAEEEVDAKLKDEKKANPKSIPYALCWLEMHPGYASLRFVASSTPRNHTIGISPKGFSWNSITYANLDVLIDSFKKNPRGSVPKPKELPSVRKPP------APPVPSRLPTENRWGAKPL 1828          
BLAST of EWM30000.1 vs. NCBI_GenBank
Match: gi|224007547|ref|XP_002292733.1| (SUPT6H,-like protein to suppressor of ty 6 [Thalassiosira pseudonana CCMP1335] >gi|220971595|gb|EED89929.1| SUPT6H,-like protein to suppressor of ty 6 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 204.527 bits (519), Expect = 2.075e-52
Identity = 139/461 (30.15%), Postives = 224/461 (48.59%), Query Frame = 0
Query:   21 LDNTRIHPECYLTHEWVGKVIRDAMEQADPTMGINE-----LVRLVMQDSFKILLATLCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTAR--DWPRPPSLPPLDRHFDEARALKEYEERRRKIEEKVRLAKEGKLRLSRRQRKVDDERWRTVNHLEAEKVLKQQGK--VGEWLFRPSGSG--SISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSFRNNTFRSCDEVSDYFKEH 470
            LD+TR HP+ YL  +W  K+  DA+E  D      +      +R VMQ+S                           +E+  L+L+ FA  +E  GNGK    +  +K E R PF DPR P    + +KLF+L++GETDATL  G  VTG+V K  +  ++V+L +  V G++      N+  D        V   V  ++TE++   +   ++   ED   +  +W RP SLPPLD  FD   AL    ++ +  EE  R  K  +       R      +R  +H E +K L++ G   VGE L RPS     S+++ W+     +  I V EE+K+   ++G +L ++  VY+ +D+++ +YI PMND ++ V  HRKF    +++V+A++   K+  P  VFY        PG   +  I+        + +TP G ++ +  F S D + + FK++
Sbjct:  811 LDDTRCHPDVYLRQKWAVKIAVDALELGDSASNDTDDYAISALRDVMQNS--------------------------REEVEELDLDTFAEMIEQNGNGKWLSHLTMVKWEFRLPFEDPRKPMEPPTHEKLFKLLTGETDATLCPGKEVTGKVVKNGDFGSQVKL-EGDVPGFIP---LRNLADDH-------VGQIVNAIITEVKMDHMCCDLTLKLEDFKKKSSEWGRPASLPPLDNSFDREAALSIDADKAKAREEPPRSGKVTR-------RACAHPAFRNASHSEVDKELREAGDAMVGEALIRPSNKSVDSLAVHWMVRPGCIKVIEVLEEDKDTDASIGNRLIIKREVYESIDELLGRYIAPMNDRVEEVIHHRKFMDKLEDEVDAKIVEMKQAQPKGVFYHVCWSESYPGYVSLRFIMNRTPRNHTIGITPDGFAWGSMNFNSMDRLLNAFKKN 1227          
BLAST of EWM30000.1 vs. NCBI_GenBank
Match: gi|1072228791|gb|OEU13526.1| (hypothetical protein FRACYDRAFT_209780 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 203.756 bits (517), Expect = 4.012e-52
Identity = 143/480 (29.79%), Postives = 239/480 (49.79%), Query Frame = 0
Query:   21 LDNTRIHPECYLTHEWVGKVIRDAMEQADPTMGINELVRLVMQDSFKILLATLCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDM--DFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTAR--DWPRPPSLPPLDRHFD-------EARALKEYEERRRKIEEKV--RLAKEGKLRLSRRQRKVDDE-RWRTVNHLEAEKVLKQQG--KVGEWLFRPS--GSGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSFRNNTFRSCDEVSDYFKEHFRDAVSLSSSST 482
            LDNTR+HP+ Y  + W  K+  DA+E+A+      E      Q   K L                       D++  L+L+ FAN +E  GNGK +  M+ IK E R  F DPR     +  DKLF L++GETD +LR G  +TG++    +  ++V+L+  +      R    N+  D     E +V V + V  +VTE++K  ++V +S   ED   +   W RP SL PLD +FD       E +  KE E R   ++ K+  ++ ++GK R+ R  R+      +R     E ++ LK  G   VGE L RPS   + S+++ W+  +  +  I V EEEK+   ++G  L ++G  Y  +D++  +YI PMNDL++ + +HRKF   +++ ++ +LRA K  + + + Y        PG   +  I+       P+ ++P G  +    F+S D + + FK++ R   + ++ ++
Sbjct:  884 LDNTRLHPDVYQKNNWASKIATDALERAEEGTKNKE------QAGIKALRDVW------------------HDKVEELDLDTFANMIEENGNGKWHSHMEMIKWEFRLQFADPRNQMETLGGDKLFRLITGETDQSLRPGKEITGKILVNTDFGSKVKLEGDIPAFISLR----NLADDHVESAEDVVAVGSIVTALVTEVKKDHMTVDMSLRMEDFRKQPSSWERPESLTPLDFYFDTNASKAIEDKKSKEREARLEAMQLKLSSKIGEDGK-RMGRVTRRACAHPAFRNAKGNEVDEELKAGGLAMVGEALIRPSSKSADSLAIHWMYKDGSIKIIEVTEEEKDTDASIGNILKIKGESYGSIDELYGRYIAPMNDLVEELVNHRKFVDQSEDDLDEKLRAEKATNKNSIPYNVCWMEMHPGYSSLRFILSSTPRQHPIGISPNGFVWGVKNFKSLDLLLNEFKKNPRGTSTNAAKAS 1334          
BLAST of EWM30000.1 vs. NCBI_GenBank
Match: gi|397575829|gb|EJK49909.1| (hypothetical protein THAOC_31164, partial [Thalassiosira oceanica])

HSP 1 Score: 198.364 bits (503), Expect = 1.813e-50
Identity = 150/495 (30.30%), Postives = 243/495 (49.09%), Query Frame = 0
Query:   21 LDNTRIHPECYLTHEWVGKVIRDAMEQADPTMGINE----LVRLVMQDS---FKILLATLCPPSEQGRPIDRLLVAE-----IP-----DELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDM--DFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTAR--DWPRPPSLPPLDRHFDEARAL-------KEYEERRRKIEEKV---RL-----AKEGKLRLSRRQRKVDDE-----RWRTVNHLEAEKVLKQQGK--VGEWLFRPSGSG--SISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSFRNNTFRSCDEVSDYFKEH 470
            LD++R HP+ Y  + W  K+  DA+E  D     +E     +R +M DS    K L        E+         AE     +P     D++  L++E FA+ +E  G+GK   Q+   K ELR P+ DPR P       +LF+L++GETDA+L  G  VTG+V K ++  ++++L +  V G++      N+  D     + +V V T V  ++T+++   + V +S   ED   +  +W RP SL PLD +FD A AL       KE +ER   +  KV   R+     A EG +   RR  KV         +R   H   ++ LK  G   +GE L RPS     S+++ W+     +  I V EE+K+   ++G +L V+  VY+ +D+++ ++I PMND ++ V  HRKF    +++V+  L+  K+ +P  VFY        PG   +  I+        + +TP G  +   TF + D + + FK++
Sbjct:  610 LDDSRCHPDVYQRNRWAVKIAVDALELGDSVAQDDENAITAIRDIMDDSQLEVKRLYDATKSEWERAYGSGTFNTAEWDPKLLPPESWRDKIEELDIEAFADMIEQNGSGKWLTQLTMTKWELRMPYEDPRKPMEPPQGARLFKLLTGETDASLCPGKHVTGKVIKNNDFGSQIKL-EGDVPGFIP---LRNLADDHVESADDIVQVGTVVNAIITQVKMDHMCVDLSLKREDFKKKSSEWERPASLAPLDPYFDRAAALAIDAEKDKERDERLESLRLKVGGTRIEGDDDAAEGGV-AHRRSGKVTRRACAHPAFRNATHDTVDRELKDAGDAMIGEALVRPSNKSCDSLAVHWMVRPGCIKVIEVLEEDKDTDASIGNRLIVKKEVYESIDELLGRFIAPMNDRVEEVQHHRKFMDKLEDEVDERLQEMKRANPKGVFYQVCWSESYPGYISLRFIMNRSCRHHTIGITPDGFLWGGKTFGNLDRLMNEFKKN 1099          
BLAST of EWM30000.1 vs. NCBI_GenBank
Match: gi|1210528215|dbj|GAX13330.1| (transcription elongation factor SPT6 [Fistulifera solaris])

HSP 1 Score: 196.438 bits (498), Expect = 1.205e-49
Identity = 145/490 (29.59%), Postives = 239/490 (48.78%), Query Frame = 0
Query:   21 LDNTRIHPECYLTHEWVGKVIRDAMEQADPTM---GINELVRLVMQDSF----KILLATLCPPSEQGRPIDRLLV----AEIP-----DELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGY-LHRSRYPNMQRDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTAR--DWPRPPSLPPLDRHFDEARALKEYEERRRKIEEKVRLAKEGKLRLSRRQRKVDD---------------ERWRTVNHLEAEKVLKQQGK--VGEWLFRPSG--SGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSFRNNTFRSCDEVSDYFKEHFR 472
            LD TR+HP+ Y+ + W  K+  DA+E+ DP        + VR VM DS     ++  AT         P   +        +P     D++  L+L+ FAN +E  G+G+ +  ++ IK E R P  DPR P   +S DK+F L++GE+D +LR G  +TG+V +  +  +RV+L+  +     L      +++   DF   V V   V  VVTE++K  ++V +S   ED   +   W RP SL  LD  FD   A K  ++  +K +  V       + L R    VD                  +R   + E E+ L   G   VGE L RPS   S S+++ W+  E ++  I V EE KE   ++G  L ++   +  +D+++ ++I PMND ++ + SHRKF  + +E+V+A+L+  KK +P  + Y        PG   +  +         + ++P+G S+ + T+ + D + D FK++ R
Sbjct: 1306 LDGTRLHPDVYIRNNWALKIAFDALEREDPKTKESAAIKAVRDVMDDSHLEVERLFKATKAEWERHYGPTFNIKEWDPRVNVPHDQWRDKVEELDLDTFANMIEQNGHGRWHTHLEMIKWEFRLPAADPRKPLEPLSGDKVFHLITGESDQSLRPGKEITGKVIRNGDFGSRVKLEGDIPAFIPLRNLSDEHVESADDF---VSVGQIVTAVVTEVKKDHMTVDMSLKLEDFRKKPSSWERPTSLFSLDECFDIQAANKIEDDNAKKRDAHVDALL---VSLGRTGDDVDGLRKGKRRVVRRACTHPAFRNAKNKEVERELLDGGSQMVGEALIRPSNKSSDSLAIHWVVKEGMIKVIEVLEENKETDASIGNILKIKDDTFGSIDELLGRFIAPMNDYVEELVSHRKFLDLTEEEVDAKLKDEKKANPKSIPYALCWLEMHPGYASLRFVASSTPRNHTIGISPKGFSWNSITYPNLDVLIDGFKKNPR 1789          
BLAST of EWM30000.1 vs. NCBI_GenBank
Match: gi|695388092|ref|XP_009519091.1| (hypothetical protein PHYSODRAFT_349766 [Phytophthora sojae] >gi|348683988|gb|EGZ23803.1| hypothetical protein PHYSODRAFT_349766 [Phytophthora sojae])

HSP 1 Score: 159.073 bits (401), Expect = 3.149e-37
Identity = 130/461 (28.20%), Postives = 228/461 (49.46%), Query Frame = 0
Query:   18 VNLLDNTRIHPECYLTHEWVGKVIRDA-----MEQADPTMGINELVRLVMQDSFKILLATLCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVD-ENAARVRLDQCVVTGYLHRSRYPNMQRDM---DFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTARD-------WPR--------PPSLPPLDRHFDEARALKEYEERRRKIEEKVRLAKEGKLRLSRRQRKVDDERWRTVNHLEAEKVLKQQGKVGEWLFRPS--GSGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSF 452
            +N LD+TRIHPE Y       K+  DA     ++  DP    +  V   M  S   + +   PP+       RL  AEI D L+ L+L  +A  LE    G     ++ IK+ELR+P+ D RA ++   ++ LF L++GET  TLR GM V   +  +  +   RVRL Q  +   LHR R P+   D+    F   + V+  +  + ++ E  R  +++ C    L           +PR          S+  +DR  +E  A    E++     +  R+  +G     R++R++    +R +N   A + L++Q  VGE + RPS  G+  ++L+W  L+ +  H  ++E++K +   +G+ L ++   Y+ +D+++A+++ PMN L+D V  ++ ++ ++KE VE +L   KK+HPS++ Y  +   + PG F + +I +       ++V   G  F
Sbjct: 1014 LNPLDDTRIHPESYYM---AVKICGDANNNSTIDMYDPNH-YSYAVEDTMYQSASAIRSRNAPPNT------RLGDAEIQDVLSELDLSAYAGRLELQKKGPKLLTLEYIKRELRYPYFDKRAKYQVPKDEDLFFLLNGETRETLRIGMIVPATLLHMSGDEFVRVRL-QSGMRSSLHRERLPDYLSDVRPQTFPKGITVNAKILAIQSDRE-GRYELQLGCNRRSLIDMSMCFYPERFPRYTNSKLVESDSMERVDRLLNEPPA---EEDKATTFTQATRV--QGSHPSRRKKRQIAHPLFRNINCQTAMQYLREQ-PVGEVVIRPSTLGTDHLTLTWKMLDGVYRHFDIQEKDKPSEARIGQTLIIKEEKYENIDELIARFVDPMNSLVDDVIRYKYYKNVSKESVEEDLIKQKKEHPSRIPYALHVYSKFPGCFSITYIARETPRSCHMEVKSGGFRF 1456          
BLAST of EWM30000.1 vs. NCBI_GenBank
Match: gi|1214713496|gb|OWZ24386.1| (hypothetical protein PHMEG_000564 [Phytophthora megakarya])

HSP 1 Score: 158.688 bits (400), Expect = 4.696e-37
Identity = 143/513 (27.88%), Postives = 245/513 (47.76%), Query Frame = 0
Query:   18 VNLLDNTRIHPECYLTHEWVGKVIRDA-----MEQADPTMGINELVRLVMQDSFKILLATLCPPSEQGRPIDRLLVAEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFELVSGETDATLRSGMPVTGRVWKVD-ENAARVRLDQCVVTGYLHRSRYPNMQ---RDMDFEAMVPVDTPVEGVVTEIEKSRISVRISCLAEDLTARDWPRPPSLPPLDRHFDEARALKEYEERRRKI-------EEKVRLAKEGKLRLS----RRQRKVDDERWRTVNHLEAEKVLKQQGKVGEWLFRPS--GSGSISLSWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSHRKFRRMAKEQVEAELRASKKKHPSQVFYLYYPDPRRPGSFKMAHIVKHQIFGEPVDVTPRGLSF----RNNTFRSCDEVSDYFK-EHFRDAVSLSSSSTSTAMPPTDSSTLAPAPTSRPP 503
            +N LD+TRIHPE Y       K+  DA     ++  DP    +  V   M  S   + +   PP+       RL  AEI D L+ L+L  +A  LE    G     ++ IK+ELR+P+ D RA ++   ++ LF L+SGET  TLR GM V   +  +  ++  RVRL Q  +   LHR R P+     R   F   + V+  +  +  + E  R  +++ C    L        P   P  R+ +E     +  ER  ++       E+K    +  ++  +    R++R++    +R +N   A + L++Q  VGE + RPS  G+  ++L+W  LE +  H  + E++K +   +G+ L ++   Y+ +D+++A+++ PMN L+D V  ++ +   +KE VE +L   KK+HPS++ Y  +   + PG F + +I +       ++V   G  F     ++   S  +   +FK +        S+SS +T+    DSS+   A  S  P
Sbjct: 1004 LNPLDDTRIHPESYYM---AVKICGDANNNSTIDMYDPNH-YSYAVEDTMYQSASAIRSRNAPPNT------RLGDAEIQDVLSELDLSAYAGRLELQKKGPKLLTLEYIKRELRYPYFDKRAKYQVPKDEDLFFLLSGETRETLRVGMIVPATLLHMSGDDFVRVRL-QSGMRSSLHRERLPDYLMEIRPQSFPKGITVNAKILDIQADRE-GRFELQLGCNRRSLIDMSMCFLPDRFP--RYTNEQAVENDSRERVDRLLNEPPVEEDKTTFTQATRVPGAHPSRRKKRQIAHPLFRNINCHTAMQYLREQ-PVGEVVIRPSTLGTDHLTLTWKMLEGVYRHFDIHEKDKPSEARIGQTLIIKEEKYENIDELIARFVDPMNSLVDDVVRYKYYNSASKESVEEDLIKQKKEHPSRIPYALHVYSKFPGCFSITYIARETPRSCHMEVKSGGYRFFGRIESSILPSLSQALQFFKMKALVVNGPASNSSRTTSYQRNDSSSGPFAQRSSAP 1501          
The following BLAST results are available for this feature:
BLAST of EWM30000.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112611|gb|EWM30000.1|0.000e+0100.00transcription elongation factor spt6 [Nannochlorop... [more]
gi|553180884|ref|XP_005853476.1|0.000e+0100.00transcription elongation factor spt6 [Nannochlorop... [more]
gi|219124143|ref|XP_002182370.1|5.659e-5530.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210532192|dbj|GAX09258.1|1.676e-5430.30transcription elongation factor SPT6 [Fistulifera ... [more]
gi|224007547|ref|XP_002292733.1|2.075e-5230.15SUPT6H,-like protein to suppressor of ty 6 [Thalas... [more]
gi|1072228791|gb|OEU13526.1|4.012e-5229.79hypothetical protein FRACYDRAFT_209780 [Fragilario... [more]
gi|397575829|gb|EJK49909.1|1.813e-5030.30hypothetical protein THAOC_31164, partial [Thalass... [more]
gi|1210528215|dbj|GAX13330.1|1.205e-4929.59transcription elongation factor SPT6 [Fistulifera ... [more]
gi|695388092|ref|XP_009519091.1|3.149e-3728.20hypothetical protein PHYSODRAFT_349766 [Phytophtho... [more]
gi|1214713496|gb|OWZ24386.1|4.696e-3727.88hypothetical protein PHMEG_000564 [Phytophthora me... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna669rna669Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications