EWM24022.1, cds6661 (CDS) Nannochloropsis gaditana

Overview
NameEWM24022.1
Unique Namecds6661
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:234654..235069 +
Alignment locationCM002469.1:235180..235573 +
Alignment locationCM002469.1:235734..235833 +
Alignment locationCM002469.1:235975..236021 +
Alignment locationCM002469.1:236120..236239 +
Alignment locationCM002469.1:236445..236513 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24022.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100040g27.2020.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:234654..235069 +
CM002469.1supercontigCM002469.1:235180..235573 +
CM002469.1supercontigCM002469.1:235734..235833 +
CM002469.1supercontigCM002469.1:235975..236021 +
CM002469.1supercontigCM002469.1:236120..236239 +
CM002469.1supercontigCM002469.1:236445..236513 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24022.1 vs. NCBI_GenBank
Match: gi|585105309|gb|EWM24022.1| (hypothetical protein Naga_100040g27 [Nannochloropsis gaditana])

HSP 1 Score: 784.637 bits (2025), Expect = 0.000e+0
Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 0
Query:    1 MRQRANLNLPQLLQLVNTTFRERMFRFHPRITVASIVAIAALSPKTMERSTFLVHAMKPGVNACGGAKSWACNVGTSSRASFAASRGSNFNQLPPVAFLSHKSSLTSNREYSRGGKDTITHAFNCKSVTTPIKSGNLLWSIEQKHSYAARDLIRHFASSSSSNPPPTPPRYPGPDDEERKKVHEKVESAHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVKEKLGVVSDKAHDIKEAAKEKVTGTKEALEDTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMKGKSEQAKKTRDEAQNRAERAAQELDTSKKEK 381
            MRQRANLNLPQLLQLVNTTFRERMFRFHPRITVASIVAIAALSPKTMERSTFLVHAMKPGVNACGGAKSWACNVGTSSRASFAASRGSNFNQLPPVAFLSHKSSLTSNREYSRGGKDTITHAFNCKSVTTPIKSGNLLWSIEQKHSYAARDLIRHFASSSSSNPPPTPPRYPGPDDEERKKVHEKVESAHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVKEKLGVVSDKAHDIKEAAKEKVTGTKEALEDTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMKGKSEQAKKTRDEAQNRAERAAQELDTSKKEK
Sbjct:    1 MRQRANLNLPQLLQLVNTTFRERMFRFHPRITVASIVAIAALSPKTMERSTFLVHAMKPGVNACGGAKSWACNVGTSSRASFAASRGSNFNQLPPVAFLSHKSSLTSNREYSRGGKDTITHAFNCKSVTTPIKSGNLLWSIEQKHSYAARDLIRHFASSSSSNPPPTPPRYPGPDDEERKKVHEKVESAHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVKEKLGVVSDKAHDIKEAAKEKVTGTKEALEDTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMKGKSEQAKKTRDEAQNRAERAAQELDTSKKEK 381          
BLAST of EWM24022.1 vs. NCBI_GenBank
Match: gi|392920148|ref|NP_001256168.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|371571154|emb|CCF23419.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 72.0182 bits (175), Expect = 5.250e-10
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 0
Query:  187 ESAHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVK---EKLG--------VVSDKAHDIKEAAKEKVTGTKEALE----DTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMK 350
            + A + K KA + +D  KD+AG AW  TK+ A++AK+   DAA  AKDK K   EK G         V +KA DI ++ K   T +K+ +E    D    AK+KAS+A++K  D A E K++A +A ++    + ++     +  + +A++A  T  D+   A+ES  +  + AKD  K
Sbjct:  545 DKAGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDN----TKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSK 719          
BLAST of EWM24022.1 vs. NCBI_GenBank
Match: gi|392920156|ref|NP_001256172.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|332078423|emb|CCA65580.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 71.2478 bits (173), Expect = 6.132e-10
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 0
Query:  187 ESAHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVK---EKLG--------VVSDKAHDIKEAAKEKVTGTKEALE----DTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMK 350
            + A + K KA + +D  KD+AG AW  TK+ A++AK+   DAA  AKDK K   EK G         V +KA DI ++ K   T +K+ +E    D    AK+KAS+A++K  D A E K++A +A ++    + ++     +  + +A++A  T  D+   A+ES  +  + AKD  K
Sbjct:  181 DKAGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDN----TKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSK 355          
BLAST of EWM24022.1 vs. NCBI_GenBank
Match: gi|392920136|ref|NP_001256162.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|371571155|emb|CCF23420.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 71.2478 bits (173), Expect = 8.894e-10
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 0
Query:  187 ESAHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVK---EKLG--------VVSDKAHDIKEAAKEKVTGTKEALE----DTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMK 350
            + A + K KA + +D  KD+AG AW  TK+ A++AK+   DAA  AKDK K   EK G         V +KA DI ++ K   T +K+ +E    D    AK+KAS+A++K  D A E K++A +A ++    + ++     +  + +A++A  T  D+   A+ES  +  + AKD  K
Sbjct:  593 DKAGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDN----TKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSK 767          
BLAST of EWM24022.1 vs. NCBI_GenBank
Match: gi|392920142|ref|NP_001256165.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|371571153|emb|CCF23418.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 70.8626 bits (172), Expect = 1.175e-9
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 0
Query:  187 ESAHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVK---EKLG--------VVSDKAHDIKEAAKEKVTGTKEALE----DTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMK 350
            + A + K KA + +D  KD+AG AW  TK+ A++AK+   DAA  AKDK K   EK G         V +KA DI ++ K   T +K+ +E    D    AK+KAS+A++K  D A E K++A +A ++    + ++     +  + +A++A  T  D+   A+ES  +  + AKD  K
Sbjct:  577 DKAGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDN----TKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSK 751          
BLAST of EWM24022.1 vs. NCBI_GenBank
Match: gi|392920154|ref|NP_001256171.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|2353333|gb|AAB69446.1| Ce-LEA [Caenorhabditis elegans] >gi|3924819|emb|CAB05543.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 70.8626 bits (172), Expect = 1.311e-9
Identity = 61/179 (34.08%), Postives = 97/179 (54.19%), Query Frame = 0
Query:  187 ESAHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVK---EKLG--------VVSDKAHDIKEAAKEKVTGTKEALE----DTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMK 350
            + A + K KA + +D  KD+AG AW  TK+ A++AK+   DAA  AKDK K   EK G         V +KA DI ++ K   T +K+ +E    D    AK+KAS+A++K  D A E K++A +A ++    + ++     +  + +A++A  T  D+   A+ES  +  + AKD  K
Sbjct:  505 DKAGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDN----TKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSK 679          
BLAST of EWM24022.1 vs. NCBI_GenBank
Match: gi|392920144|ref|NP_001256166.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|371571160|emb|CCF23425.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 69.707 bits (169), Expect = 3.928e-9
Identity = 62/181 (34.25%), Postives = 98/181 (54.14%), Query Frame = 0
Query:  189 AHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVK---EKLG--------VVSDKAHDIKEAAKEKVTGTKEALE----DTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMKGKSE 354
            A + K KA + +D  KD+AG AW  TK+ A++AK+   DAA  AKDK K   EK G         V +KA DI ++ K   T +K+ +E    D    AK+KAS+A++K  D A E K++A +A ++    + ++     +  + +A++A  T  D+   A+ES  +  + AKD  K  +E
Sbjct:  547 AGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDN----TKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSKSITE 723          
BLAST of EWM24022.1 vs. NCBI_GenBank
Match: gi|392920132|ref|NP_001256160.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|371571161|emb|CCF23426.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 69.3218 bits (168), Expect = 5.354e-9
Identity = 62/181 (34.25%), Postives = 98/181 (54.14%), Query Frame = 0
Query:  189 AHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVK---EKLG--------VVSDKAHDIKEAAKEKVTGTKEALE----DTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMKGKSE 354
            A + K KA + +D  KD+AG AW  TK+ A++AK+   DAA  AKDK K   EK G         V +KA DI ++ K   T +K+ +E    D    AK+KAS+A++K  D A E K++A +A ++    + ++     +  + +A++A  T  D+   A+ES  +  + AKD  K  +E
Sbjct:  595 AGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDN----TKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSKSITE 771          
BLAST of EWM24022.1 vs. NCBI_GenBank
Match: gi|392920138|ref|NP_001256163.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|371571158|emb|CCF23423.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 68.9366 bits (167), Expect = 6.913e-9
Identity = 62/181 (34.25%), Postives = 98/181 (54.14%), Query Frame = 0
Query:  189 AHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVK---EKLG--------VVSDKAHDIKEAAKEKVTGTKEALE----DTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMKGKSE 354
            A + K KA + +D  KD+AG AW  TK+ A++AK+   DAA  AKDK K   EK G         V +KA DI ++ K   T +K+ +E    D    AK+KAS+A++K  D A E K++A +A ++    + ++     +  + +A++A  T  D+   A+ES  +  + AKD  K  +E
Sbjct:  579 AGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDN----TKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSKSITE 755          
BLAST of EWM24022.1 vs. NCBI_GenBank
Match: gi|392920150|ref|NP_001256169.1| (plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans] >gi|332078424|emb|CCA65581.1| plant Late Embryo Abundant (LEA) related [Caenorhabditis elegans])

HSP 1 Score: 68.5514 bits (166), Expect = 8.024e-9
Identity = 61/177 (34.46%), Postives = 96/177 (54.24%), Query Frame = 0
Query:  189 AHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVK---EKLG--------VVSDKAHDIKEAAKEKVTGTKEALE----DTTEQAKEKASEAYEKVSDTAYEYKERAEEAAEHAMKVSTEEEEKLAEQLQQRATEAKSTATDRLYRAQESVEEGVEEAKDYMK 350
            A + K KA + +D  KD+AG AW  TK+ A++AK+   DAA  AKDK K   EK G         V +KA DI ++ K   T +K+ +E    D    AK+KAS+A++K  D A E K++A +A ++    + ++     +  + +A++A  T  D+   A+ES  +  + AKD  K
Sbjct:  507 AGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDN----TKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSK 679          
The following BLAST results are available for this feature:
BLAST of EWM24022.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105309|gb|EWM24022.1|0.000e+0100.00hypothetical protein Naga_100040g27 [Nannochlorops... [more]
gi|392920148|ref|NP_001256168.1|5.250e-1034.08plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920156|ref|NP_001256172.1|6.132e-1034.08plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920136|ref|NP_001256162.1|8.894e-1034.08plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920142|ref|NP_001256165.1|1.175e-934.08plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920154|ref|NP_001256171.1|1.311e-934.08plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920144|ref|NP_001256166.1|3.928e-934.25plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920132|ref|NP_001256160.1|5.354e-934.25plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920138|ref|NP_001256163.1|6.913e-934.25plant Late Embryo Abundant (LEA) related [Caenorha... [more]
gi|392920150|ref|NP_001256169.1|8.024e-934.46plant Late Embryo Abundant (LEA) related [Caenorha... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6677rna6677Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications