EWM24050.1, cds6624 (CDS) Nannochloropsis gaditana

Overview
NameEWM24050.1
Unique Namecds6624
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:155418..155433 -
Alignment locationCM002469.1:154902..155130 -
Alignment locationCM002469.1:154267..154660 -
Alignment locationCM002469.1:153935..154022 -
Alignment locationCM002469.1:153494..153714 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24050.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100280g2.2299.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:155418..155433 -
CM002469.1supercontigCM002469.1:154902..155130 -
CM002469.1supercontigCM002469.1:154267..154660 -
CM002469.1supercontigCM002469.1:153935..154022 -
CM002469.1supercontigCM002469.1:153494..153714 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24050.1 vs. NCBI_GenBank
Match: gi|585105341|gb|EWM24050.1| (hypothetical protein Naga_100280g2 [Nannochloropsis gaditana])

HSP 1 Score: 652.899 bits (1683), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query:    1 MQEISRLSFIWRIFYAFEVFCSALPSMPRILSVAFVCCCYHASTSAFFLQPTLSTKMASITSVRQTAALEAGTSASLDDQADFVKAELARKKQEYDASLKARISASVANADVADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVPDSKPSSKKTS 315
            MQEISRLSFIWRIFYAFEVFCSALPSMPRILSVAFVCCCYHASTSAFFLQPTLSTKMASITSVRQTAALEAGTSASLDDQADFVKAELARKKQEYDASLKARISASVANADVADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVPDSKPSSKKTS
Sbjct:    1 MQEISRLSFIWRIFYAFEVFCSALPSMPRILSVAFVCCCYHASTSAFFLQPTLSTKMASITSVRQTAALEAGTSASLDDQADFVKAELARKKQEYDASLKARISASVANADVADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVPDSKPSSKKTS 315          
BLAST of EWM24050.1 vs. NCBI_GenBank
Match: gi|553185609|ref|XP_005854275.1| (protein atypical group [Nannochloropsis gaditana CCMP526] >gi|422294780|gb|EKU22080.1| protein atypical group [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:   27 MPRILSVAFVCCCYHASTSAFFLQPTLSTKMASITSVRQTAALEAGTSASLDDQADFVKAELARKKQEYDASLKARISASVANADVADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVPDSKPSSKKTS 315
            MPRILSVAFVCCCYHASTSAFFLQPTLSTKMASITSVRQTAALEAGTSASLDDQADFVKAELARKKQEYDASLKARISASVANADVADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVPDSKPSSKKTS
Sbjct:    1 MPRILSVAFVCCCYHASTSAFFLQPTLSTKMASITSVRQTAALEAGTSASLDDQADFVKAELARKKQEYDASLKARISASVANADVADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVPDSKPSSKKTS 289          
BLAST of EWM24050.1 vs. NCBI_GenBank
Match: gi|298712738|emb|CBJ33337.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 211.46 bits (537), Expect = 2.460e-63
Identity = 123/285 (43.16%), Postives = 180/285 (63.16%), Query Frame = 0
Query:   42 ASTSAFFLQPTLSTKMASITSV----------------RQTAALEAGTSASLDDQADFVKAELARKKQEYDASLKARISA----SVANADVADSIPPLDSLPYVPYLDETGKINDCGADAK-VKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVP 305
             +T AF +   LS + A+  ++                R++A L   T++ LD  A++VKAELAR ++EY+A+ KA+I      + A  D A  + PL  L +  +LD+ GK+     D K VKASVYA+YDES+T+RYIGVSR + QSLRL LAR P+ TY F+V +I++P+R LLEI +++W+++ G  P GN +  +Q +WE A++V PL  E D A +   + K + E+  +KK+  RFE   + +L  RGV ES+RFDPKLKG+GLLD+ + K PDS+VP
Sbjct:   13 GNTRAFLVSAPLSGRTAAAAAMGTSSVCRAEDWAGFARRRSAGLCMATNSELDQSAEYVKAELARVQEEYEANRKAKIKEQTRQAAARGDAA--VTPLADLEFHSFLDKDGKV--ASIDTKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAINVVPLFTEEDLAVVAEWKEKGK-EDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGRGLLDVKMPK-PDSSVP 291          
BLAST of EWM24050.1 vs. NCBI_GenBank
Match: gi|873223495|emb|CEM28487.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 190.274 bits (482), Expect = 9.052e-56
Identity = 105/237 (44.30%), Postives = 143/237 (60.34%), Query Frame = 0
Query:   81 ADFVKAELARKKQEYDASLKARISASV----ANADVADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVPDSKPSSKK 313
            +++ K +L  K+  Y   L+ R+ A      A+ DV  SIP L SLP +PYL   GK+        VKASVYA+YDE +T++++GV+RS+ QSL LHLARMP+ T+  +V+HI +P R LLE+ + +W+D+ G  P GN   P+Q+LWE  LD+KPLM + D         K +   N   +V RR+E  K  VL AR VTE +RFDPKLK +GL DL + K P   VP   P   K
Sbjct:    6 SEYTKQQLKEKESRYHHELQQRLKAETDRLRASGDV--SIPSLSSLPLMPYLTPDGKVTSADVTPGVKASVYAIYDEGKTLQHVGVTRSIRQSLLLHLARMPQLTHYVKVHHILRPNRSLLELIKQSWLDESGNIPPGN-RPPDQELWEHPLDIKPLMTDEDRERYAEKEQKGKG-FNVYLEVARRYEAEKKEVLEARHVTEEVRFDPKLKRQGLSDLLIPK-PKDEVPTGAPRQNK 237          
BLAST of EWM24050.1 vs. NCBI_GenBank
Match: gi|971509082|dbj|GAQ89125.1| (hypothetical protein KFL_004890080 [Klebsormidium nitens])

HSP 1 Score: 189.504 bits (480), Expect = 1.550e-54
Identity = 96/192 (50.00%), Postives = 127/192 (66.15%), Query Frame = 0
Query:  116 IPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLY-LEKQPDSAVPD 306
            + PL  LP VP+L E GKI DC + A  KASVYA++DE + VR++G+SR++  SLRLH AR+P Q +  +V HI  P R  LE  RD W+ +LGY+P GNDNGP Q  WE+ LDV+PLM + + AA+E A     + + A+K+V RR E    +   AR  TESLRFDPKLK KG+LD+      PD+ VP+
Sbjct:  118 VTPLAELPLVPFLTEEGKIADC-SQADAKASVYAIFDEEKVVRHVGISRAIGPSLRLHFARVPLQCWAVKVQHIKAPRRSALEAIRDAWIAELGYRPTGNDNGPEQNRWENPLDVRPLMTDDEKAAVEEAAPGPPTAK-ALKQVARRVEAELKASYAARQSTESLRFDPKLKEKGMLDVKNPAPPPDTKVPE 307          
BLAST of EWM24050.1 vs. NCBI_GenBank
Match: gi|168033848|ref|XP_001769426.1| (predicted protein [Physcomitrella patens] >gi|162679346|gb|EDQ65795.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 174.866 bits (442), Expect = 5.368e-49
Identity = 97/236 (41.10%), Postives = 136/236 (57.63%), Query Frame = 0
Query:   75 ASLDDQADFVKAELARKKQEYDASLKARISASVANADVADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLY-LEKQPDSAVPDSKP 309
            A+ D+  +  +   A+ ++EY     A    S+   +       L SL Y+PYL E G I DC  +   KAS+YA++DE++T+ +IG+SR V QS+RLH AR P Q Y  +V H+SKP+R LLE TRD W+ + G  P GNDNG  Q LWE+ALD  P M + +    E A      +   +K V RR E+    +   R  T+ LRFDPKLK + LLDL  +  +PD++VP + P
Sbjct:   75 AAADEHQERTRQATAQAQEEYRKRQDALRRQSMQGGEGVS----LSSLEYIPYLTEEGHIADC-TEPGAKASLYAIFDENKTLCFIGISRQVYQSMRLHFARRPLQCYYVKVMHVSKPSRALLEGTRDAWISENGSVPVGNDNGEIQNLWENALDCTPFMTDEEKLLHEEA-APGPPKAKVLKNVARRIEKDLEGIFKQRNCTDVLRFDPKLKDRCLLDLKGVAVKPDTSVPTATP 304          
BLAST of EWM24050.1 vs. NCBI_GenBank
Match: gi|1026765888|gb|OAE26517.1| (hypothetical protein AXG93_1406s1090 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 169.474 bits (428), Expect = 1.195e-46
Identity = 88/196 (44.90%), Postives = 122/196 (62.24%), Query Frame = 0
Query:  119 LDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLY-LEKQPDSAVPDSKPSSKK 313
            LDS+ Y PYL E G I D      +KASVYA++D+++T++Y+GV+R V QS+RLH AR P + +  +V H+S+P+R LLE  RD W+   G  P GNDNG  Q  WE+ LD K  M + +   LE A      +   +K V RR E+  ++    R  T+ LRF+PKLK +GLLDL  +  +PDS+VP S P SK+
Sbjct:  138 LDSMEYTPYLTEEGLIADI-TKPDIKASVYAIFDDAKTLQYVGVTRQVYQSMRLHFARFPSKCFYVKVQHLSRPSRALLEGIRDQWIADNGSPPPGNDNGEMQNRWENPLDCKVFMTDEEMRLLEEA-APGPPKAAVLKNVARRIEKTLMAAFEERKCTDKLRFEPKLKDRGLLDLKGVVIKPDSSVPTSTPKSKE 331          
BLAST of EWM24050.1 vs. NCBI_GenBank
Match: gi|938301257|gb|KPQ34798.1| (GIY-YIG catalytic domain [Phormidium sp. OSCR])

HSP 1 Score: 149.058 bits (375), Expect = 1.289e-40
Identity = 81/182 (44.51%), Postives = 110/182 (60.44%), Query Frame = 0
Query:  113 ADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDL 294
            A  +P L SL   PYL E G + D     KV   +YA++D  ET++++G SR+V+ SLR HL R PEQ Y FRV  I +P+R LLE  R  W+ + G  P G  NG  Q  W   +DVKPLM +A+ +A E A + +  +   +K+V RR +   +  L ARGV ES RF+PKLK +GLL+L
Sbjct:    4 AAELPSLHSLTLHPYLTENGDVADEFLVGKV--GIYAIFDNEETLQFVGYSRNVSVSLRQHLIRQPEQCYSFRVETIDRPSRTLLEDIRQKWLTENGTIPPG--NGEAQAQWTQPIDVKPLMTDAERSAFEEA-LDEGKKTKCIKQVARRVQATVLERLAARGVMESFRFNPKLKEQGLLEL 180          
BLAST of EWM24050.1 vs. NCBI_GenBank
Match: gi|516255936|ref|WP_017659899.1| (hypothetical protein [Geitlerinema sp. PCC 7105])

HSP 1 Score: 147.517 bits (371), Expect = 5.428e-40
Identity = 78/183 (42.62%), Postives = 109/183 (59.56%), Query Frame = 0
Query:  112 VADSIPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDL 294
            V   +PPL SLP  PYLDE GKI D   D K K   YA++D+ +T++YIG SR +  SLR HL R P Q Y F++  I +P R +LE+ R  W+ +    P GN +   + LW + +DVKP ++  +  A+  A + + S+   +KK  RR E   ++ L+ RG TE LRF+PKLK  G LDL
Sbjct:    3 VQTDLPPLSSLPARPYLDEGGKIPD--GDVKGKIGAYAVFDDRDTLQYIGYSRDIALSLRQHLVRRPHQCYSFKIQTIDRPDRKVLEMLRQAWIAENSTTPPGNSD--EEALWVNPIDVKPRLSPEERDAIANA-VDEISKIKCLKKAARRVESEILAELSDRGATEPLRFNPKLKENGFLDL 180          
BLAST of EWM24050.1 vs. NCBI_GenBank
Match: gi|763335916|ref|WP_044194246.1| (Nuclease subunit of the excinuclease complex [Oscillatoria acuminata])

HSP 1 Score: 146.362 bits (368), Expect = 1.677e-39
Identity = 73/179 (40.78%), Postives = 111/179 (62.01%), Query Frame = 0
Query:  116 IPPLDSLPYVPYLDETGKINDCGADAKVKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDL 294
            I PL +L ++PYLD+ G   +C +D   K  VYA++D  +T++YIG SR +  SL+ HL R P   Y  +   I +P+R +LE  R  W+ + G  P G  NGP++  W  A+DVKPLM + +    E + I + ++   +K+V+RR E   ++VL +RG+ E++RF+PKLK  GLLDL
Sbjct:    7 ISPLSTLEFLPYLDDQG---NCNSDFTGKVGVYAIFDGEKTLQYIGYSRDIVLSLKQHLMRKPNSCYWIKAQTIERPSRTILEEIRAAWIAENGQTPLG--NGPDEGQWTQAIDVKPLMTDEEREKYEKS-IDEFTQMKLLKQVSRRVEADLLAVLESRGLKEAIRFNPKLKESGLLDL 179          
The following BLAST results are available for this feature:
BLAST of EWM24050.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105341|gb|EWM24050.1|0.000e+0100.00hypothetical protein Naga_100280g2 [Nannochloropsi... [more]
gi|553185609|ref|XP_005854275.1|0.000e+0100.00protein atypical group [Nannochloropsis gaditana C... [more]
gi|298712738|emb|CBJ33337.1|2.460e-6343.16conserved unknown protein [Ectocarpus siliculosus][more]
gi|873223495|emb|CEM28487.1|9.052e-5644.30unnamed protein product [Vitrella brassicaformis C... [more]
gi|971509082|dbj|GAQ89125.1|1.550e-5450.00hypothetical protein KFL_004890080 [Klebsormidium ... [more]
gi|168033848|ref|XP_001769426.1|5.368e-4941.10predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1026765888|gb|OAE26517.1|1.195e-4644.90hypothetical protein AXG93_1406s1090 [Marchantia p... [more]
gi|938301257|gb|KPQ34798.1|1.289e-4044.51GIY-YIG catalytic domain [Phormidium sp. OSCR][more]
gi|516255936|ref|WP_017659899.1|5.428e-4042.62hypothetical protein [Geitlerinema sp. PCC 7105][more]
gi|763335916|ref|WP_044194246.1|1.677e-3940.78Nuclease subunit of the excinuclease complex [Osci... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6640rna6640Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications