EWM24078.1, cds6595 (CDS) Nannochloropsis gaditana

Overview
NameEWM24078.1
Unique Namecds6595
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:73037..74419 +
Alignment locationCM002469.1:74543..74739 +
Alignment locationCM002469.1:74847..75000 +
Alignment locationCM002469.1:75171..75380 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24078.1
Productribulose- -bisphosphate carboxylase oxygenase small subunit n-methyltransferase i
Orig transcript idgnl|cribi|Naga_100644g2.9856.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:73037..74419 +
CM002469.1supercontigCM002469.1:74543..74739 +
CM002469.1supercontigCM002469.1:74847..75000 +
CM002469.1supercontigCM002469.1:75171..75380 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR015353Rubisco_LSMT_subst-bd
IPR001214SET_dom
Homology
BLAST of EWM24078.1 vs. NCBI_GenBank
Match: gi|585105371|gb|EWM24078.1| (ribulose- -bisphosphate carboxylase oxygenase small subunit n-methyltransferase i [Nannochloropsis gaditana])

HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0
Identity = 647/647 (100.00%), Postives = 647/647 (100.00%), Query Frame = 0
Query:    1 MASTSRPPARKRRNTHAAASPGSTRTVAALFYTAACTSITVVSFSLLHTTHAFVYLPRRDHRLTSTLPSQWDLGRCSSNHDGRPGMPKWRGHTRDMLVRTATSKKSSAEAPEERDWKQALLEDDDLDIDAIIAANKETLPRLPGILNASPRDGNVDLPESFLDEAVASPKKEEGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGENGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAFDGALPADINEYFAIALMLIKERALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEFALLEEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKPFKMFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVALLPDDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLRSGKRKLRPEEE 647
            MASTSRPPARKRRNTHAAASPGSTRTVAALFYTAACTSITVVSFSLLHTTHAFVYLPRRDHRLTSTLPSQWDLGRCSSNHDGRPGMPKWRGHTRDMLVRTATSKKSSAEAPEERDWKQALLEDDDLDIDAIIAANKETLPRLPGILNASPRDGNVDLPESFLDEAVASPKKEEGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGENGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAFDGALPADINEYFAIALMLIKERALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEFALLEEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKPFKMFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVALLPDDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLRSGKRKLRPEEE
Sbjct:    1 MASTSRPPARKRRNTHAAASPGSTRTVAALFYTAACTSITVVSFSLLHTTHAFVYLPRRDHRLTSTLPSQWDLGRCSSNHDGRPGMPKWRGHTRDMLVRTATSKKSSAEAPEERDWKQALLEDDDLDIDAIIAANKETLPRLPGILNASPRDGNVDLPESFLDEAVASPKKEEGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGENGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAFDGALPADINEYFAIALMLIKERALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEFALLEEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKPFKMFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVALLPDDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLRSGKRKLRPEEE 647          
BLAST of EWM24078.1 vs. NCBI_GenBank
Match: gi|553194950|ref|XP_005856061.1| (ribulose- -bisphosphate carboxylase oxygenase small subunit n-methyltransferase i [Nannochloropsis gaditana CCMP526] >gi|422293007|gb|EKU20308.1| ribulose- -bisphosphate carboxylase oxygenase small subunit n-methyltransferase i [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 744.962 bits (1922), Expect = 0.000e+0
Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 0
Query:   96 MLVRTATSKKSSAEAPEERDWKQALLEDDDLDIDAIIAANKETLPRLPGILNASPRDGNVDLPESFLDEAVASPKKEEGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGENGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAFDGALPADINEYFAIALMLIKERALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEFALLEEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKPFKMFNPIRGEEVITIYADKDYKKM 459
            MLVRTATSKKSSAEAPEERDWKQALLEDDDLDIDAIIAANKETLPRLPGILNASPRDGNVDLPESFLDEAVASPKKEEGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGENGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAFDGALPADINEYFAIALMLIKERALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEFALLEEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKPFKMFNPIRGEEVITIYADKDYKKM
Sbjct:    1 MLVRTATSKKSSAEAPEERDWKQALLEDDDLDIDAIIAANKETLPRLPGILNASPRDGNVDLPESFLDEAVASPKKEEGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGENGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAFDGALPADINEYFAIALMLIKERALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEFALLEEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKPFKMFNPIRGEEVITIYADKDYKKM 364          
BLAST of EWM24078.1 vs. NCBI_GenBank
Match: gi|298706765|emb|CBJ29688.1| (putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Ectocarpus siliculosus])

HSP 1 Score: 429.483 bits (1103), Expect = 1.256e-140
Identity = 226/474 (47.68%), Postives = 310/474 (65.40%), Query Frame = 0
Query:  164 EAVASPKKEEGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGENGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAFDG-ALPADINEYFAIALMLIKERALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEFALLEEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKPFKMFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVALLPDDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLR 636
            EA+     E G+ PL    KM GLGG   +D    +  +N  L  W+GENGVW+ DKS WGV PH L ++  T+DE E E +GRG+I    I  G+ LF LP+ +++ K+ +   F    +  D++EY AIAL+ + E+A G  SFW+ YI VLPT EEV PT +W E DLALLE SP++AAT S++RKL  E+A +E   +    ++    V T+E + WAF  +FSRAIR  +GG    +GE   ++ + PYADL NHNPFAN+YI A +    F+  + +EV+ +YAD+ YKKMEQVYISYGPK N+DLLLLYGF LDRNP+NSVD+TV+L  +D L+E K+AFL++A     +AFPL+ DRYP+EL +YLRL+ L  + + GR L ++ F    +  NEL  + S+  AC+  +A Y T EE D++L+ND  +F    KTQRMA+KHRR EK +L++T AAV +    LR
Sbjct:   54 EALKGVADEPGL-PLGPSKKMSGLGGMVAED---SRVAENNALKEWMGENGVWVYDKSDWGVGPHALSVAVDTVDENENETAGRGMIANREIKEGDELFTLPIDLLLTKDAAKKEFGADVITEDLSEYIAIALLAVHEKAKGKESFWSSYIGVLPTVEEVYPTYLWAEEDLALLEGSPVIAATESMRRKLEVEYATVENDLLDKFPEILPREVHTYEEFQWAFAMLFSRAIR--LGGLS--TGE---AVALVPYADLFNHNPFANSYIDARQQGLFFS--KTDEVV-VYADRSYKKMEQVYISYGPKGNSDLLLLYGFSLDRNPYNSVDVTVSLDENDELYERKKAFLSEAGLPPTKAFPLYNDRYPDELLQYLRLIQLNTDQLRGRTLEDLSFEKKQTDVNELMVLDSLVEACKATIAGYPTTEEQDSKLMNDPGMFRALSKTQRMAVKHRRQEKVILRRTIAAVTKDKEKLR 513          
BLAST of EWM24078.1 vs. NCBI_GenBank
Match: gi|219121061|ref|XP_002185762.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582611|gb|ACI65232.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 393.275 bits (1009), Expect = 6.643e-126
Identity = 219/471 (46.50%), Postives = 297/471 (63.06%), Query Frame = 0
Query:  183 KMQGLGGKGEDDEEKKKAQQNARLATWLGENG-VWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAF-DGALPADINEYFAIALMLIKERAL-GPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEF-ALL--EEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKPFKMFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVAL---------------LPDDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQL 632
            K++GL  +  D   K  A  N  L  WL   G V++ ++S WG  PHPL +S+ T DEI  E SGRGL+ +  IN G+ L ++P+++ + K  +  A     LP++INEY A+A  LI ER + G  S W PY+DVLP  +EVNPT  WP+ DLA L  SP++AAT+SL+ KL  E+ ALL  E+  +    D F    F F+A+ WAF  +FSRAIR++       S ++ E++ + PYADLINH+PF+  YI A +          EEVI +YAD+ Y++MEQ+YISYGPKSNA+LLLLYGF ++RNPFNSVD+TV++               +P DPL EEK AFL Q  R     FP +ADRYP E+ EYLRL+ +T ED  G+ L E +++  ISL NE A + S+  A    L++Y   EEDDA LI D  LF +    QRMA++HRR+EKRLLK+T AA+++QL
Sbjct:   64 KLKGLMPEKNDANPKFTA--NTNLIQWLTTEGNVYLSEESSWGEAPHPLAISTETKDEITNESSGRGLLARRDINDGDELLRIPMALCMTKSAARKAVGKDVLPSEINEYLAMACHLIYERNVRGEESPWKPYLDVLPDIDEVNPTFTWPDEDLAFLNGSPVIAATKSLQMKLRREYDALLGGEDGLLAKYPDRFPAEAFNFKAWEWAFTMLFSRAIRLR-------SLKQGETLALVPYADLINHSPFSQAYIDARQNGDWLFKSGDEEVI-LYADRGYRRMEQIYISYGPKSNAELLLLYGFAVERNPFNSVDVTVSIAPRTASFVKELDDDTIPVDPLAEEKAAFLEQVGRDATVDFPCYADRYPVEMLEYLRLMQMTPEDTRGKPLAEFDYSRTISLGNEAAVLTSVITAVSRQLSNYPQSEEDDAALIKDKSLFRLLSYNQRMAVRHRRNEKRLLKRTIAALEKQL 524          
BLAST of EWM24078.1 vs. NCBI_GenBank
Match: gi|1072233443|gb|OEU18174.1| (ribulose-1,5-bisphosphate caboxylase, small subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 392.889 bits (1008), Expect = 1.378e-125
Identity = 224/510 (43.92%), Postives = 308/510 (60.39%), Query Frame = 0
Query:  145 ILNASPRDGNVDLPESFLDEAVASPKKEEGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGE-NGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAF-DGALPADINEYFAIALMLIKER-ALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEFALL---EEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVA-EKPFKMFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVAL---------------LPDDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQL 632
            IL AS   G+ +  ++ L+   A P      G      KM+GL GK      K  A  NARL +WL E  GV++ ++S WG  PHP+ +S+ T DEI  E SGRGL+ +  IN G+ L ++P+ + + K  +  A     LP++INEY A+A  LI ER  LG  SF+ PYIDVLP TEEVNPT  W + DL+ L  SP++AAT+SL+ KL  E+  L   ++         F    +T E + WAF  +FSRAIR++       + +E E++ M PYADLINH+PF+  YI A E    +F+   GEE + +YAD+ Y++MEQ+YISYG KSNA+LLLLYGF ++RNP+NSVD+TVA+               +P DPL EEK  FLA   R     FP +ADRYP EL E+LRL+ +T +D  G+ L + +++  IS  NE A ++S+  A    +  Y   EEDDA LI D  +F +    QRMAI+HRR+EKRLLK+T AA++ Q+
Sbjct:   43 ILMASGEGGDKEWAKALLESTAAIP------GVFEEEMKMKGLLGKKTGANPKLTA--NARLVSWLSEEGGVYLSEESTWGEAPHPMAISTETKDEITNESSGRGLLARRDINDGDNLLKVPIKLCLTKSSARTALGKDVLPSEINEYLAVACQLIHERYVLGDKSFFKPYIDVLPETEEVNPTFTWSDDDLSFLNGSPVIAATQSLQMKLQREYDSLLGGDDGLCNKYPSRFPIEHYTMENWTWAFAMLFSRAIRLR-------NLKEGETLAMVPYADLINHSPFSQAYIDAREDGDWLFSS--GEEEVILYADRGYRRMEQIYISYGQKSNAELLLLYGFAVERNPYNSVDVTVAIAPLTESFVKELNDDTIPVDPLAEEKVTFLASVGRESLVDFPCYADRYPVELLEFLRLMQMTPDDTRGKPLNDFDYSRTISAANEAAVLSSVIEAVTRQIDKYPNTEEDDAALIKDKGMFRLLSYNQRMAIRHRRNEKRLLKRTIAALENQM 535          
BLAST of EWM24078.1 vs. NCBI_GenBank
Match: gi|1210522691|dbj|GAX18704.1| (hypothetical protein FisN_10Hh082 [Fistulifera solaris])

HSP 1 Score: 382.489 bits (981), Expect = 4.032e-122
Identity = 214/482 (44.40%), Postives = 296/482 (61.41%), Query Frame = 0
Query:  173 EGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGENG-VWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAF-DGALPADINEYFAIALMLIKER-ALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEF-ALLE-EQYMRAR-SDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKPFKMFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVAL---------------LPDDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLL 633
            E +       KM+GL   G   + K  A  NA L  WL + G V++ ++S WG  PHP+ +S+ T DEI  E SGRGL+ +  IN G+ L ++P+ + + K  +  A    ALP++INEY AIA  LI E+  +   S+W PY+DVLPTT+EV+PT  W + DLA L+ SP++AAT+SL+ KL  E+ ALL  +  + AR  D F    FT E + WAF  +FSRAIR++       +  + E++ + PYADLINH+PF+  YI A +          EEVI +YAD+ Y++MEQ+YISYGPKSNA+LLLLYGF ++RNPFNSVD+TV++               +P DPL EEK  FL    R     FP +ADRYP E+ EYLRL+ +T +D  G+ L   +++  IS  NE A + S+  A    L  Y   EE+D  LI D  LF +    QRMAI+HRR+EKRLLK+T AA+++Q++
Sbjct:   23 EAIETFEKEMKMKGLMKGGSQGDVKLSA--NANLIQWLSKEGDVYLSEQSSWGEAPHPMAISTDTKDEITNESSGRGLLARRDINDGDELLKIPMKMCMTKSNARKALGKDALPSEINEYLAIACHLIYEKFVMADQSYWKPYLDVLPTTDEVSPTFTWSDDDLAFLKGSPVIAATKSLQMKLKREYDALLGGDNGLIARFPDRFPKEHFTMENWTWAFTMLFSRAIRLR-------NLSQGETLALVPYADLINHSPFSQAYIDARQSGDWLFKSGDEEVI-LYADRGYRRMEQIYISYGPKSNAELLLLYGFAVERNPFNSVDVTVSIAPRTASFIKELNDENIPVDPLAEEKLQFLESVGRANTVDFPCYADRYPTEMLEYLRLMQMTPDDTRGKPLNAFDYSRTISPGNEAAVLTSVIEAVTRQLGKYPQTEEEDNALIKDKSLFRLLSYNQRMAIRHRRNEKRLLKRTIAALEKQII 494          
BLAST of EWM24078.1 vs. NCBI_GenBank
Match: gi|873238704|emb|CEL95601.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 382.874 bits (982), Expect = 1.726e-121
Identity = 202/466 (43.35%), Postives = 291/466 (62.45%), Query Frame = 0
Query:  182 AKMQGLGGKGEDDEEKKKAQQNARLATWLGENGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAFDGALPAD-INEYFAIALMLIKERALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEFALLEEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKPFKMFNPIRGEEVI----------TIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVALLPDDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLR 636
            +K++GL G   DD    K QQN  LA WL  NGV++ +KS WG+ PH  LL++  +DE   E +GRGL+ K  +++   +  +PL +   K+ +   F   +  D ++E+ AIAL+LI ERA G  SF+ PY+DVLPT EEVNPT VWPE D+ LL  S       SL+ KL  E+  +    +  + ++F   VFTFEA+LWAFI IFSR+IR+++G     + +E E I M PYADLINH+PF++++I AE P       RG+ +            +Y D+ YK+MEQVY+SYG KSNADLLLLYGF LDRNP N+V L   L P+D L+++K AF+ +A    +  FP+  D++P+E+FE++RL+ + K  +G R L   +FT P+S   E   + ++   C E L  Y T + +D  LI+D  LF+M  K+QRMA++ R  EKR+LK+T AA+K +  N++
Sbjct:  105 SKLRGLRGLTSDD---IKVQQNEALAGWLFANGVYLSEKSEWGLAPHACLLATDVMDENAGESAGRGLLAKKQLDVNEEVLSVPLRLCFTKDAARRVFGPDIVDDGMSEHIAIALLLIHERAKGDDSFFFPYLDVLPTIEEVNPTFVWPEEDVELLRGSQAFITATSLREKLLNEYDRVRSLVLTKKPEMFPEDVFTFEAWLWAFIQIFSRSIRLQLGKS---TSKEREEIAMVPYADLINHSPFSSSFITAESPSAFLKRWRGDPITEQVRVVDDDVKVYTDRAYKRMEQVYVSYGQKSNADLLLLYGFALDRNPHNTVSLDFQLDPNDELYDDKMAFVDKAGLPSRIFFPVGDDKFPSEMFEFVRLMVIDKATLGDRPLARFDFTRPLSEALENRVLDTVIEQCAEILQRYPTTDAEDEALISDRGLFSMMSKSQRMAVRMRFQEKRILKRTMAALKARRKNVK 564          
BLAST of EWM24078.1 vs. NCBI_GenBank
Match: gi|1210523904|dbj|GAX17228.1| (hypothetical protein FisN_10Lh082 [Fistulifera solaris])

HSP 1 Score: 380.178 bits (975), Expect = 2.882e-121
Identity = 212/486 (43.62%), Postives = 294/486 (60.49%), Query Frame = 0
Query:  173 EGVGPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGENG-VWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAF-DGALPADINEYFAIALMLIKER-ALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEF-ALL--EEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVAEKP----FKMFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVAL---------------LPDDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLL 633
            E +       KM+GL   G   + K  A  NA L  WL + G V++ ++S WG  PHP+ +S+ T DEI  E SGRGL+ +  IN G+ L ++P+ + + K  +  A    ALP++INEY AIA  LI E+  +   S+W PY+DVLPT  EV+PT  W E DLA LE SP++AAT+SL+ KL  E+ ALL  +   +    + F    FT E + WAF  +FSRAIR++       +  + E++ + PYADLINH+PF+  YI A +     FK      G+E + +YAD+ Y++MEQ+YISYGPKSNA+LLLLYGF ++RNPFNSVD+TV++               +P DPL EEK  FL    R     FP +ADRYP E+ EYLRL+ +T +D  G+ L   +++  IS  NE A + S+  A    L  Y   EE+D  LI D  LF +    QRMAI+HRR+EKRLLK+T AA+++Q++
Sbjct:   23 EAIDTFEKEMKMKGLMKGGSQGDVKLSA--NANLVQWLSKEGDVYLSEQSSWGEAPHPMAISTDTKDEITNESSGRGLLARRDINDGDELLKIPMKMCMTKANARKALGKDALPSEINEYLAIACHLIFEKFVMADQSYWKPYLDVLPTVNEVSPTFTWSEDDLAFLEGSPVIAATKSLQMKLKREYDALLGGDNGLVAKFPERFPKEHFTLENWTWAFTMLFSRAIRLR-------NLSQGETLALVPYADLINHSPFSQAYIDARQSGDWLFK-----NGDEEVILYADRGYRRMEQIYISYGPKSNAELLLLYGFAVERNPFNSVDVTVSIAPRTTSFIKELNDENIPVDPLAEEKLQFLESVGRANTVDFPCYADRYPTEMLEYLRLMQMTPDDTRGKPLNAFDYSRTISPGNEAAVLTSVIEAVTRQLKKYPQTEEEDNALIKDKSLFRLLSYNQRMAIRHRRNEKRLLKRTIAALEKQII 494          
BLAST of EWM24078.1 vs. NCBI_GenBank
Match: gi|397613505|gb|EJK62256.1| (hypothetical protein THAOC_17139 [Thalassiosira oceanica])

HSP 1 Score: 370.933 bits (951), Expect = 2.187e-116
Identity = 211/484 (43.60%), Postives = 294/484 (60.74%), Query Frame = 0
Query:  176 GPLVSRAKMQGLGGKGEDDEEKKKAQQNARLATWLGE-NGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAFD-GALPADINEYFAIALMLIKERAL-GPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEF--------ALLEEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVA-EKPFKMFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVALLP-------------DDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLN 634
            G      KM+GL G     +   K   NARL +WL E  GV++ + S WG  PHPL +S+ T+DEI  E SGRGL+ +  IN G+ L ++PL + + ++ +       AL   INEY A+A  LI E+ + G  SF+A Y+ VLP  +EVNPT  WP+ DLA LE SP+VAATRSL+ KL  E+         L+ +  +R     F    +TFE + WAF  +FSRAIR++       + +  E + M PYADLINH+ F+  +I A E    +F    GEE + +YAD+ Y++MEQVYISYG KSNA+LLLLYGF L+RNP+NSVD+TV++ P             +DPL +EK  FL    R +   FP +ADRYP E+ EYLRL+ +T ED  G+ L + +++  IS  NE + + S+  A +  L  +   EEDDA +I D  +F +F   QRMA++HRR+EKRLLK+T AA+++Q+ N
Sbjct:  135 GKFEEEMKMKGLLGPNRG-KGNTKLSANARLISWLEEEGGVYLAESSTWGEAPHPLAISTETVDEITNESSGRGLLARRSINDGDELLKIPLDLCLTRKSARRELGKDALQEGINEYLAVACQLIHEKFVKGEDSFYAAYMGVLPEVDEVNPTFTWPDEDLAFLEGSPVVAATRSLQMKLRREYDDLLGGPDGLVAKFPLR-----FPAEHYTFENWEWAFTMLFSRAIRLR-------NLQVGERLAMVPYADLINHSAFSQAFIDARESGDWLFKS--GEEEVILYADRGYRQMEQVYISYGQKSNAELLLLYGFALERNPYNSVDVTVSIAPRTKQIAEANEGVEEDPLADEKLEFLLSVGRDQTVDFPCYADRYPVEMLEYLRLMMMTPEDTRGKPLSDFDYSRTISSANEASVLRSVVAAVKYQLGLFPQTEEDDAAIIKDKGMFRLFSYNQRMAVRHRRNEKRLLKRTLAALEKQIRN 603          
BLAST of EWM24078.1 vs. NCBI_GenBank
Match: gi|223992783|ref|XP_002286075.1| (rubisco small subunit small subunit n-methyltransferase, partial [Thalassiosira pseudonana CCMP1335] >gi|220977390|gb|EED95716.1| rubisco small subunit small subunit n-methyltransferase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 363.614 bits (932), Expect = 2.980e-116
Identity = 204/442 (46.15%), Postives = 277/442 (62.67%), Query Frame = 0
Query:  203 NARLATWL-GENGVWMQDKSGWGVPPHPLLLSSRTIDEIELEDSGRGLICKYPINMGNALFQLPLSIVIDKEKSLAAF-DGALPADINEYFAIALMLIKER-ALGPSSFWAPYIDVLPTTEEVNPTLVWPEGDLALLEASPLVAATRSLKRKLAAEF-ALL--EEQYMRARSDVFDPSVFTFEAYLWAFINIFSRAIRVKIGGKRGPSGEEEESIIMCPYADLINHNPFANTYIVA-EKPFKMFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVALLPD-------------DPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKT 624
            N+RL  WL  E GV++ + S WG  PHPL +S+ T+DEI  E SGRGL+ +  IN G+ L ++P+ + I ++ +  A    AL   INEY AIA  LI E+  LG  S W  Y+ VLP  EEVNPT  W + DLA L+ SP+VAATRSL+ KL  E+ ALL  ++  +    D F    FT+E ++WAF  +FSRAIR++       + +  E + M PYADLINH+ F+  +I A E    +F    GEE + +YAD+ Y++MEQVYISYG KSNA+LLLLYGF L+RNP+NSVD+TV++ P              DPL +EK  FLA   R +   FP +ADRYP E+ E+LRL+ +T ED  G+ L + +++  IS  NE A ++S+  A +  L  Y   EEDDA +I D  LF +    QRMA++HRR+EKRLLK+T
Sbjct:    1 NSRLIAWLESEGGVYLAESSTWGEAPHPLAISTETVDEITNESSGRGLLARRSINDGDELLKIPMDLCITRKSARKALGKDALQDGINEYLAIACQLIHEKYVLGDESEWDAYMGVLPEVEEVNPTFTWKDEDLAFLDGSPVVAATRSLQMKLRREYDALLGGQDGLIAKFPDRFPAEHFTYENWVWAFTMLFSRAIRLR-------NLQVGERLAMVPYADLINHSAFSGAFIDARESGDWLFK--NGEEEVILYADRGYRQMEQVYISYGQKSNAELLLLYGFALERNPYNSVDVTVSIAPRTAALAAANEGIEVDPLAQEKVEFLASVGRDQTVDFPCYADRYPVEMLEFLRLMMMTPEDTRGKPLADFDYSRTISPANEAAVLSSVVEAVKYQLNLYPQSEEDDANIIKDKALFRLLSYNQRMAVRHRRNEKRLLKRT 433          
The following BLAST results are available for this feature:
BLAST of EWM24078.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105371|gb|EWM24078.1|0.000e+0100.00ribulose- -bisphosphate carboxylase oxygenase smal... [more]
gi|553194950|ref|XP_005856061.1|0.000e+0100.00ribulose- -bisphosphate carboxylase oxygenase smal... [more]
gi|298706765|emb|CBJ29688.1|1.256e-14047.68putative ribulose-1,5-bisphosphate carboxylase/oxy... [more]
gi|219121061|ref|XP_002185762.1|6.643e-12646.50ribulose-1,5-bisphosphate carboxylase/oxygenase sm... [more]
gi|1072233443|gb|OEU18174.1|1.378e-12543.92ribulose-1,5-bisphosphate caboxylase, small subuni... [more]
gi|1210522691|dbj|GAX18704.1|4.032e-12244.40hypothetical protein FisN_10Hh082 [Fistulifera sol... [more]
gi|873238704|emb|CEL95601.1|1.726e-12143.35unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210523904|dbj|GAX17228.1|2.882e-12143.62hypothetical protein FisN_10Lh082 [Fistulifera sol... [more]
gi|397613505|gb|EJK62256.1|2.187e-11643.60hypothetical protein THAOC_17139 [Thalassiosira oc... [more]
gi|223992783|ref|XP_002286075.1|2.980e-11646.15rubisco small subunit small subunit n-methyltransf... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6611rna6611Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications