EWM24096.1, cds6577 (CDS) Nannochloropsis gaditana

Overview
NameEWM24096.1
Unique Namecds6577
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:28167..28279 +
Alignment locationCM002469.1:28765..29326 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24096.1
Product2-oxoglutarate e1 subunit
Orig transcript idgnl|cribi|Naga_101202g2.64.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:28167..28279 +
CM002469.1supercontigCM002469.1:28765..29326 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0004591oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0030976thiamine pyrophosphate binding
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0055114oxidation-reduction process
GO:0006099tricarboxylic acid cycle
Vocabulary: INTERPRO
TermDefinition
IPR029061THDP-binding
IPR0116032oxoglutarate_DH_E1
IPR005475Transketolase-like_Pyr-bd
Homology
BLAST of EWM24096.1 vs. NCBI_GenBank
Match: gi|585105414|gb|EWM24096.1| (2-oxoglutarate e1 subunit [Nannochloropsis gaditana])

HSP 1 Score: 449.514 bits (1155), Expect = 1.015e-159
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query:    1 MHILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLPALTYIGPPPLPTPAVGTREGHAEERERLLTTLWENVREGGAADRLDEA 224
            MHILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLPALTYIGPPPLPTPAVGTREGHAEERERLLTTLWENVREGGAADRLDEA
Sbjct:    1 MHILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLPALTYIGPPPLPTPAVGTREGHAEERERLLTTLWENVREGGAADRLDEA 224          
BLAST of EWM24096.1 vs. NCBI_GenBank
Match: gi|1051240679|gb|OCW83229.1| (hypothetical protein AKH18_02270 [Pelagibacteraceae bacterium GOM-A4])

HSP 1 Score: 149.443 bits (376), Expect = 1.280e-41
Identity = 79/214 (36.92%), Postives = 119/214 (55.61%), Query Frame = 0
Query:    4 LNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLP-------ALTYIGPPPLPTPAVGTREGHAEERERLLTTLWE 210
            +NCTTPA YFHALRRQ+ R FRKPL++MTPK+LLR+   VS+L +     +F  VL         KG +K +E  +            V+LC GKIY+D++     R+ L  + ++L R+E+L PFP  +L   L P     +  + ++W QEEP N GAW  +  +++ +L        A++YIG  P  TPA G    H  E++ ++  ++E
Sbjct:    1 MNCTTPANYFHALRRQMHRDFRKPLIIMTPKSLLRNKYCVSNLEDFSKKNSFHRVLWDHARDTKQKGFIKLKEDKK---------IRKVILCSGKIYFDLL---AAREKLKINDVILYRIEQLYPFPAKSLVKELKPF----AKNSKFYWCQEEPKNMGAWFAVRDYIQWTLETIKAKNNAISYIGRSPDATPATGYARRHNSEQQEIINKVFE 198          
BLAST of EWM24096.1 vs. NCBI_GenBank
Match: gi|511001245|gb|EPB82733.1| (oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 158.303 bits (399), Expect = 6.833e-41
Identity = 91/207 (43.96%), Postives = 121/207 (58.45%), Query Frame = 0
Query:    2 HILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLP---ALTYIGPPPLPTPAVGTREGHAEERERLL 205
            HI+NCTTPAQYFH LRRQ+LR +RKPL++M+PK+LL+ P AVSSL +M  GT FQPVL            +K     E+           V+   GK YYD+VK+ + R  LD  ++ L+R+EELSPFP+ AL   +       S    + W QEEP NAGA+AF++  L   LP   A+ Y+G  PL  PAVG      ++ + LL
Sbjct:  744 HIVNCTTPAQYFHVLRRQMLRSYRKPLIVMSPKSLLKSPLAVSSLADMAPGTCFQPVLKD--------ASIKNDAQVEK-----------VVFLSGKFYYDLVKERQAR-GLD-DKVALIRIEELSPFPKDALVKEIEKY----SGAHEFVWCQEEPQNAGAYAFMAPRLAQLLPENKAIQYVGREPLSAPAVGISSVFKKQAQELL 925          
BLAST of EWM24096.1 vs. NCBI_GenBank
Match: gi|758349869|dbj|GAN07911.1| (2-oxoglutarate dehydrogenase, E1 component [Mucor ambiguus])

HSP 1 Score: 156.762 bits (395), Expect = 2.522e-40
Identity = 90/207 (43.48%), Postives = 122/207 (58.94%), Query Frame = 0
Query:    2 HILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLP---ALTYIGPPPLPTPAVGTREGHAEERERLL 205
            HI+NCTTPAQYFH LRRQ+LR +RKPL++++PK+LL+ P AVSSL +M  GT FQPVL            +K     E+           V+   GK YYD+VK+ + R  LD  ++ L+R+EELSPFP+ ALA  +       +    + W QEEP NAGA+AF++  L   LP   A+ Y+G  PL  PAVG      ++ + LL
Sbjct:  754 HIVNCTTPAQYFHVLRRQMLRSYRKPLIVISPKSLLKSPLAVSSLADMAPGTCFQPVLKD--------ASIKNDAQVEK-----------VVFLSGKFYYDLVKERQTR-GLD-DKVALIRIEELSPFPKDALAKEIQKY----AGAREFVWCQEEPQNAGAYAFMAPRLAQLLPENKAIQYVGREPLSAPAVGISSVFKKQAQELL 935          
BLAST of EWM24096.1 vs. NCBI_GenBank
Match: gi|1026275946|gb|OAD08929.1| (E1 component [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 155.606 bits (392), Expect = 7.525e-40
Identity = 89/207 (43.00%), Postives = 121/207 (58.45%), Query Frame = 0
Query:    2 HILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLP---ALTYIGPPPLPTPAVGTREGHAEERERLL 205
            HI+NCTTPAQYFH LRRQ+LR +RKPL++++PK+LL+ P AVSSL +M  GT FQPVL            +K     E+           V+   GK YYD+VK+ + R  LD  ++ L+R+EELSPFP+ ALA  +       +    + W QEEP NAGA+AF++  L   LP    + Y+G  PL  PAVG      ++ + LL
Sbjct:  754 HIVNCTTPAQYFHVLRRQMLRSYRKPLIVISPKSLLKSPLAVSSLADMAPGTCFQPVLKD--------ASIKNDAQVEK-----------VVFLSGKFYYDLVKERQAR-GLD-DKVALIRIEELSPFPKDALAKEIQKY----AGAHEFVWCQEEPQNAGAYAFMAPRLAQLLPENKGIQYVGREPLSAPAVGISSVFKKQAQELL 935          
BLAST of EWM24096.1 vs. NCBI_GenBank
Match: gi|758361070|emb|CEP16470.1| (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 154.066 bits (388), Expect = 2.056e-39
Identity = 90/207 (43.48%), Postives = 121/207 (58.45%), Query Frame = 0
Query:    2 HILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLP---ALTYIGPPPLPTPAVGTREGHAEERERLL 205
            HI+NCTTPAQYFH LRRQ+LR +RKPLV+++PK+LL+ P AVS+L +M  GT FQPVL+ T         +K     E+           V+   GK YYD VK+ + R  LD  ++ L+R+EELSPFP+ AL   +       S    + W QEEP NAGA+AF++  L   LP    + Y+G  PL  PAVG      ++ + LL
Sbjct:  754 HIVNCTTPAQYFHVLRRQMLRSYRKPLVVISPKSLLKSPLAVSALADMAPGTCFQPVLSDT--------SIKDDTQVEK-----------VVFVSGKFYYDAVKERQNR-GLD-DKVALVRIEELSPFPKDALVEEIQKY----SRAKDFVWCQEEPQNAGAYAFMAPRLAQLLPGNKGIQYVGREPLSAPAVGISSVFKKQAQELL 935          
BLAST of EWM24096.1 vs. NCBI_GenBank
Match: gi|754344877|ref|XP_004349245.2| (dehydrogenase E1 and transketolase domain-containing protein [Capsaspora owczarzaki ATCC 30864] >gi|765550730|gb|KJE91351.1| dehydrogenase E1 and transketolase domain-containing protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 153.68 bits (387), Expect = 2.912e-39
Identity = 86/210 (40.95%), Postives = 119/210 (56.67%), Query Frame = 0
Query:    1 MHILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPT----VLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLP-ALTYIGPPPLPTPAVGTREGHAEERERLL 205
            M ++N TTPAQYFH LRRQ++RP+RKPL+++ PKTLLR P+AVS L EM   T+FQPVL                         E  + P+    V++C GK+YYD+ K    R D   + ++++RLEEL PFP +A+   L       ++ + + WVQEE  N GAWAF++      +   L YIG  PL  PAVG  + H  E E+L+
Sbjct:  757 MGVVNPTTPAQYFHLLRRQMVRPYRKPLIVVGPKTLLRLPAAVSDLNEMASNTSFQPVLG------------------------ESHIEPSGVKRVIVCSGKLYYDLAKQ---RDDSKRTDVVIIRLEELCPFPAAAIESELAKF----TNASEFVWVQEEQQNMGAWAFVAPRFEAQVGRKLKYIGRGPLAAPAVGVSKIHKAEVEKLM 935          
BLAST of EWM24096.1 vs. NCBI_GenBank
Match: gi|654638573|ref|WP_028099767.1| (2-oxoglutarate dehydrogenase subunit E1 [Dongia sp. URHE0060])

HSP 1 Score: 150.214 bits (378), Expect = 4.425e-38
Identity = 85/213 (39.91%), Postives = 119/213 (55.87%), Query Frame = 0
Query:    1 MHILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLPAL-------TYIGPPPLPTPAVGTREGHAEERERLLT 206
            M ++N TTPA YFH LRRQL R FRKPL++MTPK+LLRH +AVS LPE    T+F  VL        W         D+R G  E R+   ++LC GK+YYD++++AE R   +  Q+ ++R+E+L PFP  ALA  L      P +     W QEEP N GAW  +   +   + +L        Y+G P   +PA G  + H +E+ +L+ 
Sbjct:  761 MQVVNATTPANYFHVLRRQLHRSFRKPLIMMTPKSLLRHKNAVSKLPEFGPNTSFHRVL--------W---------DDRLGLDEKRI-RRIVLCSGKVYYDLLQEAEAR---EQDQVYIMRVEQLYPFPHKALAAELA---RFPGAEIV--WCQEEPKNMGAWTHVMPEIESVMESLGSKQARVRYVGRPAAASPATGLFKRHVKEQNKLVN 947          
BLAST of EWM24096.1 vs. NCBI_GenBank
Match: gi|657651482|ref|WP_029455926.1| (2-oxoglutarate dehydrogenase subunit E1 [Candidatus Pelagibacter ubique])

HSP 1 Score: 150.214 bits (378), Expect = 5.298e-38
Identity = 79/217 (36.41%), Postives = 120/217 (55.30%), Query Frame = 0
Query:    1 MHILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLPA-------LTYIGPPPLPTPAVGTREGHAEERERLLTTLWE 210
            M ++NCTTPA YFHALRRQ+ R FRKPL++MTPK+LLR+   VS+L +     TF  +L         +G +K +E  E +          V+LC GK+Y+D++   E R+ L    ++L R+E+L PFP   L   L P     +    +FW QEEP N GAW  +  +++ +L         ++YIG  P  TPA G  + H  +++ ++  ++E
Sbjct:  769 MQVMNCTTPANYFHALRRQMHRDFRKPLIMMTPKSLLRNKYCVSNLEDFSKSNTFHRILWDHAIDPQNQGFIKLKENSEIK---------KVILCSGKVYFDLL---EAREKLKKDDVILFRIEQLYPFPAKTLVKELKPY----AESAKFFWCQEEPKNMGAWFSVRDYIQWTLDTIKAKNNEISYIGRSPDATPATGYAKRHNSQQQEIIDKVFE 969          
BLAST of EWM24096.1 vs. NCBI_GenBank
Match: gi|560890271|ref|WP_023647880.1| (2-oxoglutarate dehydrogenase subunit E1 [Candidatus Pelagibacter ubique])

HSP 1 Score: 150.214 bits (378), Expect = 5.560e-38
Identity = 79/217 (36.41%), Postives = 120/217 (55.30%), Query Frame = 0
Query:    1 MHILNCTTPAQYFHALRRQLLRPFRKPLVLMTPKTLLRHPSAVSSLPEMEIGTTFQPVLASTLDGRPWKGGLKGREGDEREGGREGRLPPTVLLCCGKIYYDIVKDAEGRKDLDPSQILLLRLEELSPFPRSALAPFLPPALPLPSSPTTYFWVQEEPWNAGAWAFISSHLRPSLPA-------LTYIGPPPLPTPAVGTREGHAEERERLLTTLWE 210
            M ++NCTTPA YFHALRRQ+ R FRKPL+LMTPK+LLR+   VS+L +     +F  +L         KG +K +E  E +          V+LC GK+Y+D++   E R+ L    ++L R+E+L PFP   L   L P     +    +FW QEEP N GAW  +  +++ +L         ++YIG  P  +PA G  + H  +++ ++  ++E
Sbjct:  769 MQVMNCTTPANYFHALRRQMHRDFRKPLILMTPKSLLRNKYCVSNLEDFSKSNSFHRILWDHAIDPQTKGFIKLKESSEIK---------KVILCSGKVYFDLL---EAREKLKKDDVILFRIEQLYPFPAKTLVKELKPY----AKNAKFFWCQEEPKNMGAWFSVRDYIQWTLDTIKANNSEISYIGRSPDASPATGYAKRHNSQQQEIINKVFE 969          
The following BLAST results are available for this feature:
BLAST of EWM24096.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105414|gb|EWM24096.1|1.015e-159100.002-oxoglutarate e1 subunit [Nannochloropsis gaditan... [more]
gi|1051240679|gb|OCW83229.1|1.280e-4136.92hypothetical protein AKH18_02270 [Pelagibacteracea... [more]
gi|511001245|gb|EPB82733.1|6.833e-4143.96oxoglutarate dehydrogenase (succinyl-transferring)... [more]
gi|758349869|dbj|GAN07911.1|2.522e-4043.482-oxoglutarate dehydrogenase, E1 component [Mucor ... [more]
gi|1026275946|gb|OAD08929.1|7.525e-4043.00E1 component [Mucor circinelloides f. lusitanicus ... [more]
gi|758361070|emb|CEP16470.1|2.056e-3943.48hypothetical protein [Parasitella parasitica][more]
gi|754344877|ref|XP_004349245.2|2.912e-3940.95dehydrogenase E1 and transketolase domain-containi... [more]
gi|654638573|ref|WP_028099767.1|4.425e-3839.912-oxoglutarate dehydrogenase subunit E1 [Dongia sp... [more]
gi|657651482|ref|WP_029455926.1|5.298e-3836.412-oxoglutarate dehydrogenase subunit E1 [Candidatu... [more]
gi|560890271|ref|WP_023647880.1|5.560e-3836.412-oxoglutarate dehydrogenase subunit E1 [Candidatu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6593rna6593Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications