EWM24106.1, cds6567 (CDS) Nannochloropsis gaditana

Overview
NameEWM24106.1
Unique Namecds6567
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:853713..853844 -
Alignment locationCM002468.1:853518..853629 -
Alignment locationCM002468.1:853227..853344 -
Alignment locationCM002468.1:852761..852905 -
Alignment locationCM002468.1:852453..852637 -
Alignment locationCM002468.1:852069..852167 -
Alignment locationCM002468.1:851764..851923 -
Alignment locationCM002468.1:851135..851193 -
Alignment locationCM002468.1:850761..850890 -
Alignment locationCM002468.1:850546..850628 -
Alignment locationCM002468.1:850332..850409 -
Alignment locationCM002468.1:850095..850224 -
Alignment locationCM002468.1:849814..849928 -
Alignment locationCM002468.1:849603..849709 -
Alignment locationCM002468.1:849395..849451 -
Alignment locationCM002468.1:849115..849270 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24106.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100286g2.3549.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:853713..853844 -
CM002468.1supercontigCM002468.1:853518..853629 -
CM002468.1supercontigCM002468.1:853227..853344 -
CM002468.1supercontigCM002468.1:852761..852905 -
CM002468.1supercontigCM002468.1:852453..852637 -
CM002468.1supercontigCM002468.1:852069..852167 -
CM002468.1supercontigCM002468.1:851764..851923 -
CM002468.1supercontigCM002468.1:851135..851193 -
CM002468.1supercontigCM002468.1:850761..850890 -
CM002468.1supercontigCM002468.1:850546..850628 -
CM002468.1supercontigCM002468.1:850332..850409 -
CM002468.1supercontigCM002468.1:850095..850224 -
CM002468.1supercontigCM002468.1:849814..849928 -
CM002468.1supercontigCM002468.1:849603..849709 -
CM002468.1supercontigCM002468.1:849395..849451 -
CM002468.1supercontigCM002468.1:849115..849270 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Homology
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|585105440|gb|EWM24106.1| (hypothetical protein Naga_100286g2 [Nannochloropsis gaditana])

HSP 1 Score: 1212.98 bits (3137), Expect = 0.000e+0
Identity = 621/621 (100.00%), Postives = 621/621 (100.00%), Query Frame = 0
Query:    1 MTTRTTCSQAPEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGTKGHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSDGRSPPPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEIALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTALLPPLLLRPPSFLLLLRPLPSPARPRALPPSPSLLVDGLAQLPPRSPGASSSPPRPLPPSLRGPRPPSRPSAHLLLLGRGEERCSLLAEWSVGRRLRDRLGGGMGRADEALPHRLLPQVQRGSRRPVHRMVHLPLRTLRAWSGRYECYLPKSAAEVELLNKIIRGTESNCQIEGSLNWYEIDTPERGC 621
            MTTRTTCSQAPEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGTKGHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSDGRSPPPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEIALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTALLPPLLLRPPSFLLLLRPLPSPARPRALPPSPSLLVDGLAQLPPRSPGASSSPPRPLPPSLRGPRPPSRPSAHLLLLGRGEERCSLLAEWSVGRRLRDRLGGGMGRADEALPHRLLPQVQRGSRRPVHRMVHLPLRTLRAWSGRYECYLPKSAAEVELLNKIIRGTESNCQIEGSLNWYEIDTPERGC
Sbjct:    1 MTTRTTCSQAPEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGTKGHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSDGRSPPPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEIALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTALLPPLLLRPPSFLLLLRPLPSPARPRALPPSPSLLVDGLAQLPPRSPGASSSPPRPLPPSLRGPRPPSRPSAHLLLLGRGEERCSLLAEWSVGRRLRDRLGGGMGRADEALPHRLLPQVQRGSRRPVHRMVHLPLRTLRAWSGRYECYLPKSAAEVELLNKIIRGTESNCQIEGSLNWYEIDTPERGC 621          
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|553184703|ref|XP_005854134.1| (hypothetical protein NGA_0244200, partial [Nannochloropsis gaditana CCMP526] >gi|422294927|gb|EKU22227.1| hypothetical protein NGA_0244200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 369.392 bits (947), Expect = 4.811e-119
Identity = 262/365 (71.78%), Postives = 262/365 (71.78%), Query Frame = 0
Query:   10 APEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGTKGHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSD-----------------------------------GRSPPPSSLP--------------------LIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEE-----------------------------------------IALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALL 278
            APEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGT GHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSD                                   G    PS LP                    LIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEE                                         IALHSMDLLSVSSSPP SSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALL
Sbjct:    1 APEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGTNGHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSDGRSRRWQAGKEGKRAGWGCREFLGPAVRSSISFLRGSLSLPSVLPACSSPPSLPPSPSPPPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEVRPAFPTAFTPSLSYSRLCARLNPLIISGLRLSPLPLPSFQIALHSMDLLSVSSSPPLSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALL 365          
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|553181738|ref|XP_005853614.1| (hypothetical protein NGA_0476500 [Nannochloropsis gaditana CCMP526] >gi|422295447|gb|EKU22746.1| hypothetical protein NGA_0476500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 166.007 bits (419), Expect = 3.869e-45
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0
Query:  175 MDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFA 266
            MDLLSVSSSPP SSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRR A
Sbjct:    1 MDLLSVSSSPPLSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRCA 92          
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|553183776|ref|XP_005853965.1| (hypothetical protein NGA_0462100 [Nannochloropsis gaditana CCMP526] >gi|422295100|gb|EKU22399.1| hypothetical protein NGA_0462100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 98.2117 bits (243), Expect = 1.701e-19
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query:  368 MGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTAL 434
            MGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTAL
Sbjct:    1 MGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTAL 67          
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|298707961|emb|CBJ30332.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.5077 bits (223), Expect = 1.384e-15
Identity = 68/208 (32.69%), Postives = 98/208 (47.12%), Query Frame = 0
Query:  227 LEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTAL 434
            LE LR  E+ H+  L+  P+    GYY+SK+W  N RR+ EA + RR++         G  G   GG   G +E+ S G     RER ES +  PW +VNADI C H GL    R S G+                       KR++++KR W+ L  ++     F+  +  EC +C      E++  E  +R R+ E+ A P L AL
Sbjct:  139 LETLRHAELSHVASLVRGPQRPGKGYYLSKSWAGNLRRYVEAQARRRRSPSFASNSAAG-SGATVGG--SGGKEKRSRG-----RERAESNLMPPWQDVNADIMCQHRGLA---RSSQGN---------------------RAKRQVVDKRVWRELVLFFPAAVPFRAESV-ECSECRGLCANERKAEEAVKRQREQEI-ALPVLRAL 312          
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|219125021|ref|XP_002182788.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405582|gb|EEC45524.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 87.0409 bits (214), Expect = 2.289e-14
Identity = 89/309 (28.80%), Postives = 135/309 (43.69%), Query Frame = 0
Query:  124 PSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQRE--GGIVEEIALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSK---DKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQC---------SQREREEKERLEEER 418
            P+   L+ LP E+     +YLRA+DL+A+ Q CR F Q E   GIV   A H           PPS + G    PT +        +    V+ S    D+R +     E LR  E+  + R+L+ PEP S GY VSK+W  +  ++ EA    ++AA   ++    ++                       R+RR S++S PW  VN+D+ C H  L    R S G  +                     +R+ + K+AWK L++ Y +  +   + T ECLQC         +QR+ EE  +LE +R
Sbjct:    3 PNGNGLLTLPLELQVRLLTYLRAYDLAAVQQVCRCFRQPELVHGIVAHAAEHVY---------PPSLTRGFDQQPTQSDPYRPLPATKDPPVAKSNAETDQRNKPCYTFEHLRNMELLVVARVLNSPEP-STGYIVSKSWCKSALKWLEAQQEEQQAAKTNKKISKKKQ---------------------RLRQRRLSDISPPWPNVNSDLLCEHSCL---SRCSNGKSAR-------------------ARRRYVNKQAWKILKKLYPDSTSLDAT-TGECLQCFAESEMNKKNQRDEEECRKLERKR 257          
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|223998150|ref|XP_002288748.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975856|gb|EED94184.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.4925 bits (197), Expect = 5.886e-13
Identity = 80/324 (24.69%), Postives = 134/324 (41.36%), Query Frame = 0
Query:  116 QSDGRSPPPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEIALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSL---------LEALRFQEVQHLHRLLSLPEP----FSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGR--------------EGGREGGREGGDRERSSSGRRRN-------SRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEE-CLQCS 404
            +S  ++ PP+   L + PRE+     ++LRA DLSAL +TC  F +R+  ++ ++  H+ + +      PP  + G   P       S + L+ S   + ++D  +  G+           E LR  E   + R+LS PEP        +YVSK+W     R+ E     RK  L +Q+                   +GG+  G+   +    SSG+++         R+RR S+   PW  +N D+ C HG L      S                          +R+ ++K+AWK L++ Y +    + S     CL C+
Sbjct:   11 RSKDKATPPAVQGLTSFPRELHLNILTFLRATDLSALQRTCSTFNKRD--LIVDVVDHAANEVY-----PPDLTVGFDTPSVSGEVKSLAALTKSN--TKAEDSEEATGATPVTLEKVYTYEMLRNMETLVVARVLSRPEPPIHERDTCFYVSKSWCRAALRWLEVQEEERKEKLERQRAAAEEARVAAAATAALTSPKGGK--GKNNRNHHPGSSGKKKKMSRKEQRQRDRRMSDAMPPWSNINNDLICEHGDLKQCSGKS-----------------------ARARRRTMDKQAWKVLKKLYPDSVQLEASVGNSGCLMCA 300          
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|397628716|gb|EJK69025.1| (hypothetical protein THAOC_09760 [Thalassiosira oceanica])

HSP 1 Score: 80.4925 bits (197), Expect = 3.427e-12
Identity = 85/331 (25.68%), Postives = 137/331 (41.39%), Query Frame = 0
Query:  123 PPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEIALHSMDLLSVSSSPPPSSSSGPGAP-----PTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEP--FSGG--YYVSKAWLSNHRRFAEALSARRKAALLQQQQ-------------QGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEK----ERLEEERRNRDLELSA 427
            P  S  L AL RE+     ++LRA DLS + QTC  F  RE  +V  +  H       +   P   + G   P      ++  +S+     +   V+   D   ++ +  E LR  E   + R +S PEP   S G  +YVSK+W  +   + E     RK   L+QQ+             + G++ G+  G  G  +++  S + + +R+R+ S    P   VN+D+ C HG +                           S     +R++++K+AWK L+ +Y +        T  CL C   +   K    +R EEE+ NR   LS 
Sbjct:    6 PNESCGLTALQREMHLSILTFLRATDLSNVQQTCTTFNNRE--LVVSVVDH-----FAAEVYPRELTEGFDTPIVSPLKSVVVASNKGRKKAESQVTIKADDSLKVYT-FEMLRNMETLVVTRAISRPEPPLNSDGTCFYVSKSWCKSALAWLEVQQEERKERELKQQRAAEEAKLLASTPSKKGKKQGKHPGSSG--KKKKLSRKEQRARDRKMSNALPPPPNVNSDLVCEHGCIKN-----------------------CSSKQARARRRVMDKQAWKILKSFYPDSHELSAEFT-GCLICRAEDETAKKAVIDRKEEEKANRKKPLSC 302          
The following BLAST results are available for this feature:
BLAST of EWM24106.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585105440|gb|EWM24106.1|0.000e+0100.00hypothetical protein Naga_100286g2 [Nannochloropsi... [more]
gi|553184703|ref|XP_005854134.1|4.811e-11971.78hypothetical protein NGA_0244200, partial [Nannoch... [more]
gi|553181738|ref|XP_005853614.1|3.869e-4597.83hypothetical protein NGA_0476500 [Nannochloropsis ... [more]
gi|553183776|ref|XP_005853965.1|1.701e-19100.00hypothetical protein NGA_0462100 [Nannochloropsis ... [more]
gi|298707961|emb|CBJ30332.1|1.384e-1532.69conserved unknown protein [Ectocarpus siliculosus][more]
gi|219125021|ref|XP_002182788.1|2.289e-1428.80predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223998150|ref|XP_002288748.1|5.886e-1324.69predicted protein, partial [Thalassiosira pseudona... [more]
gi|397628716|gb|EJK69025.1|3.427e-1225.68hypothetical protein THAOC_09760 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6583rna6583Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications