EWM24106.1, cds6567 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|585105440|gb|EWM24106.1| (hypothetical protein Naga_100286g2 [Nannochloropsis gaditana]) HSP 1 Score: 1212.98 bits (3137), Expect = 0.000e+0 Identity = 621/621 (100.00%), Postives = 621/621 (100.00%), Query Frame = 0 Query: 1 MTTRTTCSQAPEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGTKGHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSDGRSPPPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEIALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTALLPPLLLRPPSFLLLLRPLPSPARPRALPPSPSLLVDGLAQLPPRSPGASSSPPRPLPPSLRGPRPPSRPSAHLLLLGRGEERCSLLAEWSVGRRLRDRLGGGMGRADEALPHRLLPQVQRGSRRPVHRMVHLPLRTLRAWSGRYECYLPKSAAEVELLNKIIRGTESNCQIEGSLNWYEIDTPERGC 621 MTTRTTCSQAPEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGTKGHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSDGRSPPPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEIALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTALLPPLLLRPPSFLLLLRPLPSPARPRALPPSPSLLVDGLAQLPPRSPGASSSPPRPLPPSLRGPRPPSRPSAHLLLLGRGEERCSLLAEWSVGRRLRDRLGGGMGRADEALPHRLLPQVQRGSRRPVHRMVHLPLRTLRAWSGRYECYLPKSAAEVELLNKIIRGTESNCQIEGSLNWYEIDTPERGC Sbjct: 1 MTTRTTCSQAPEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGTKGHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSDGRSPPPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEIALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTALLPPLLLRPPSFLLLLRPLPSPARPRALPPSPSLLVDGLAQLPPRSPGASSSPPRPLPPSLRGPRPPSRPSAHLLLLGRGEERCSLLAEWSVGRRLRDRLGGGMGRADEALPHRLLPQVQRGSRRPVHRMVHLPLRTLRAWSGRYECYLPKSAAEVELLNKIIRGTESNCQIEGSLNWYEIDTPERGC 621
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|553184703|ref|XP_005854134.1| (hypothetical protein NGA_0244200, partial [Nannochloropsis gaditana CCMP526] >gi|422294927|gb|EKU22227.1| hypothetical protein NGA_0244200, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 369.392 bits (947), Expect = 4.811e-119 Identity = 262/365 (71.78%), Postives = 262/365 (71.78%), Query Frame = 0 Query: 10 APEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGTKGHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSD-----------------------------------GRSPPPSSLP--------------------LIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEE-----------------------------------------IALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALL 278 APEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGT GHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSD G PS LP LIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEE IALHSMDLLSVSSSPP SSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALL Sbjct: 1 APEASPSLSPPRPLTPPLTSTPLGLPPRPPSASHECLPGLDRTLTPPILLTSKPAGTNGHRDSHDSETTCCDGACDGFDRIAALAVEHQAAFPSEGESPAEAPFATQSDGRSRRWQAGKEGKRAGWGCREFLGPAVRSSISFLRGSLSLPSVLPACSSPPSLPPSPSPPPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEVRPAFPTAFTPSLSYSRLCARLNPLIISGLRLSPLPLPSFQIALHSMDLLSVSSSPPLSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALL 365
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|553181738|ref|XP_005853614.1| (hypothetical protein NGA_0476500 [Nannochloropsis gaditana CCMP526] >gi|422295447|gb|EKU22746.1| hypothetical protein NGA_0476500 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 166.007 bits (419), Expect = 3.869e-45 Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0 Query: 175 MDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFA 266 MDLLSVSSSPP SSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRR A Sbjct: 1 MDLLSVSSSPPLSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRCA 92
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|553183776|ref|XP_005853965.1| (hypothetical protein NGA_0462100 [Nannochloropsis gaditana CCMP526] >gi|422295100|gb|EKU22399.1| hypothetical protein NGA_0462100 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 98.2117 bits (243), Expect = 1.701e-19 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 Query: 368 MGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTAL 434 MGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTAL Sbjct: 1 MGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTAL 67
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|298707961|emb|CBJ30332.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 90.5077 bits (223), Expect = 1.384e-15 Identity = 68/208 (32.69%), Postives = 98/208 (47.12%), Query Frame = 0 Query: 227 LEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTAL 434 LE LR E+ H+ L+ P+ GYY+SK+W N RR+ EA + RR++ G G GG G +E+ S G RER ES + PW +VNADI C H GL R S G+ KR++++KR W+ L ++ F+ + EC +C E++ E +R R+ E+ A P L AL Sbjct: 139 LETLRHAELSHVASLVRGPQRPGKGYYLSKSWAGNLRRYVEAQARRRRSPSFASNSAAG-SGATVGG--SGGKEKRSRG-----RERAESNLMPPWQDVNADIMCQHRGLA---RSSQGN---------------------RAKRQVVDKRVWRELVLFFPAAVPFRAESV-ECSECRGLCANERKAEEAVKRQREQEI-ALPVLRAL 312
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|219125021|ref|XP_002182788.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405582|gb|EEC45524.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 87.0409 bits (214), Expect = 2.289e-14 Identity = 89/309 (28.80%), Postives = 135/309 (43.69%), Query Frame = 0 Query: 124 PSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQRE--GGIVEEIALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSK---DKRKRLGSLLEALRFQEVQHLHRLLSLPEPFSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQC---------SQREREEKERLEEER 418 P+ L+ LP E+ +YLRA+DL+A+ Q CR F Q E GIV A H PPS + G PT + + V+ S D+R + E LR E+ + R+L+ PEP S GY VSK+W + ++ EA ++AA ++ ++ R+RR S++S PW VN+D+ C H L R S G + +R+ + K+AWK L++ Y + + + T ECLQC +QR+ EE +LE +R Sbjct: 3 PNGNGLLTLPLELQVRLLTYLRAYDLAAVQQVCRCFRQPELVHGIVAHAAEHVY---------PPSLTRGFDQQPTQSDPYRPLPATKDPPVAKSNAETDQRNKPCYTFEHLRNMELLVVARVLNSPEP-STGYIVSKSWCKSALKWLEAQQEEQQAAKTNKKISKKKQ---------------------RLRQRRLSDISPPWPNVNSDLLCEHSCL---SRCSNGKSAR-------------------ARRRYVNKQAWKILKKLYPDSTSLDAT-TGECLQCFAESEMNKKNQRDEEECRKLERKR 257
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|223998150|ref|XP_002288748.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975856|gb|EED94184.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 80.4925 bits (197), Expect = 5.886e-13 Identity = 80/324 (24.69%), Postives = 134/324 (41.36%), Query Frame = 0 Query: 116 QSDGRSPPPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEIALHSMDLLSVSSSPPPSSSSGPGAPPTLASSSSSSTLSSSGAVSSSKDKRKRLGSL---------LEALRFQEVQHLHRLLSLPEP----FSGGYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGR--------------EGGREGGREGGDRERSSSGRRRN-------SRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEE-CLQCS 404 +S ++ PP+ L + PRE+ ++LRA DLSAL +TC F +R+ ++ ++ H+ + + PP + G P S + L+ S + ++D + G+ E LR E + R+LS PEP +YVSK+W R+ E RK L +Q+ +GG+ G+ + SSG+++ R+RR S+ PW +N D+ C HG L S +R+ ++K+AWK L++ Y + + S CL C+ Sbjct: 11 RSKDKATPPAVQGLTSFPRELHLNILTFLRATDLSALQRTCSTFNKRD--LIVDVVDHAANEVY-----PPDLTVGFDTPSVSGEVKSLAALTKSN--TKAEDSEEATGATPVTLEKVYTYEMLRNMETLVVARVLSRPEPPIHERDTCFYVSKSWCRAALRWLEVQEEERKEKLERQRAAAEEARVAAAATAALTSPKGGK--GKNNRNHHPGSSGKKKKMSRKEQRQRDRRMSDAMPPWSNINNDLICEHGDLKQCSGKS-----------------------ARARRRTMDKQAWKVLKKLYPDSVQLEASVGNSGCLMCA 300
BLAST of EWM24106.1 vs. NCBI_GenBank
Match: gi|397628716|gb|EJK69025.1| (hypothetical protein THAOC_09760 [Thalassiosira oceanica]) HSP 1 Score: 80.4925 bits (197), Expect = 3.427e-12 Identity = 85/331 (25.68%), Postives = 137/331 (41.39%), Query Frame = 0 Query: 123 PPSSLPLIALPREVLRLACSYLRAWDLSALVQTCRHFYQREGGIVEEIALHSMDLLSVSSSPPPSSSSGPGAP-----PTLASSSSSSTLSSSGAVSSSKDKRKRLGSLLEALRFQEVQHLHRLLSLPEP--FSGG--YYVSKAWLSNHRRFAEALSARRKAALLQQQQ-------------QGGREGGREGGREGGDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPSSPASSPLSLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEK----ERLEEERRNRDLELSA 427 P S L AL RE+ ++LRA DLS + QTC F RE +V + H + P + G P ++ +S+ + V+ D ++ + E LR E + R +S PEP S G +YVSK+W + + E RK L+QQ+ + G++ G+ G G +++ S + + +R+R+ S P VN+D+ C HG + S +R++++K+AWK L+ +Y + T CL C + K +R EEE+ NR LS Sbjct: 6 PNESCGLTALQREMHLSILTFLRATDLSNVQQTCTTFNNRE--LVVSVVDH-----FAAEVYPRELTEGFDTPIVSPLKSVVVASNKGRKKAESQVTIKADDSLKVYT-FEMLRNMETLVVTRAISRPEPPLNSDGTCFYVSKSWCKSALAWLEVQQEERKERELKQQRAAEEAKLLASTPSKKGKKQGKHPGSSG--KKKKLSRKEQRARDRKMSNALPPPPNVNSDLVCEHGCIKN-----------------------CSSKQARARRRVMDKQAWKILKSFYPDSHELSAEFT-GCLICRAEDETAKKAVIDRKEEEKANRKKPLSC 302 The following BLAST results are available for this feature:
BLAST of EWM24106.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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