EWM24107.1, cds6565 (CDS) Nannochloropsis gaditana

Overview
NameEWM24107.1
Unique Namecds6565
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:844121..844210 +
Alignment locationCM002468.1:844333..844425 +
Alignment locationCM002468.1:844540..844608 +
Alignment locationCM002468.1:844759..844869 +
Alignment locationCM002468.1:845005..845139 +
Alignment locationCM002468.1:845285..845389 +
Alignment locationCM002468.1:845501..845548 +
Alignment locationCM002468.1:845682..845849 +
Alignment locationCM002468.1:845967..846194 +
Alignment locationCM002468.1:846280..846447 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24107.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100286g4.3550.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:844121..844210 +
CM002468.1supercontigCM002468.1:844333..844425 +
CM002468.1supercontigCM002468.1:844540..844608 +
CM002468.1supercontigCM002468.1:844759..844869 +
CM002468.1supercontigCM002468.1:845005..845139 +
CM002468.1supercontigCM002468.1:845285..845389 +
CM002468.1supercontigCM002468.1:845501..845548 +
CM002468.1supercontigCM002468.1:845682..845849 +
CM002468.1supercontigCM002468.1:845967..846194 +
CM002468.1supercontigCM002468.1:846280..846447 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24107.1 vs. NCBI_GenBank
Match: gi|585105441|gb|EWM24107.1| (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 833.173 bits (2151), Expect = 0.000e+0
Identity = 404/404 (100.00%), Postives = 404/404 (100.00%), Query Frame = 0
Query:    1 MARIMRSVATMAMLTFASLAVAESPMRRMQSLTGVLSGAAKDVMEDTLPAYKPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTERDPAKLDAFVKDYAASRRFRFCTFTLFPILFYIMHFLFDKSLSGSETHYSTLKTGNTEETEEGCRTFSMRRNVSKVTARQGGSQASIFFNVCVERDARGRRREGRLIFRCDTTQTLWLRRHCKPLFNFKFLMPFRFESLMYMRLDMDRTLMYAVRQEETGRGSGHAISLD 404
            MARIMRSVATMAMLTFASLAVAESPMRRMQSLTGVLSGAAKDVMEDTLPAYKPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTERDPAKLDAFVKDYAASRRFRFCTFTLFPILFYIMHFLFDKSLSGSETHYSTLKTGNTEETEEGCRTFSMRRNVSKVTARQGGSQASIFFNVCVERDARGRRREGRLIFRCDTTQTLWLRRHCKPLFNFKFLMPFRFESLMYMRLDMDRTLMYAVRQEETGRGSGHAISLD
Sbjct:    1 MARIMRSVATMAMLTFASLAVAESPMRRMQSLTGVLSGAAKDVMEDTLPAYKPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTERDPAKLDAFVKDYAASRRFRFCTFTLFPILFYIMHFLFDKSLSGSETHYSTLKTGNTEETEEGCRTFSMRRNVSKVTARQGGSQASIFFNVCVERDARGRRREGRLIFRCDTTQTLWLRRHCKPLFNFKFLMPFRFESLMYMRLDMDRTLMYAVRQEETGRGSGHAISLD 404          
BLAST of EWM24107.1 vs. NCBI_GenBank
Match: gi|553183764|ref|XP_005853961.1| (hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526] >gi|422295096|gb|EKU22395.1| hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 513.072 bits (1320), Expect = 0.000e+0
Identity = 256/260 (98.46%), Postives = 257/260 (98.85%), Query Frame = 0
Query:    1 MARIMRSVATMAMLTFASLAVAESPMRRMQSLTGVLSGAAKDVMEDTLPAYKPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTERDPAKLDAFVKDYAASRRFRF--CTF 258
            MARIMRSVATMAMLTFASLAVAESPMRRMQSLTGVLSGAAKDVMEDTLPAYKPD ELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTERDPAKLDAFVKDYAASRRFRF  CT+
Sbjct:    1 MARIMRSVATMAMLTFASLAVAESPMRRMQSLTGVLSGAAKDVMEDTLPAYKPDGELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTERDPAKLDAFVKDYAASRRFRFSRCTW 260          
BLAST of EWM24107.1 vs. NCBI_GenBank
Match: gi|585104564|gb|EWM23494.1| (hypothetical protein Naga_100198g11 [Nannochloropsis gaditana])

HSP 1 Score: 117.857 bits (294), Expect = 1.594e-26
Identity = 60/171 (35.09%), Postives = 97/171 (56.73%), Query Frame = 0
Query:   59 MMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVT 229
              Q   K+G+D ++LFET F S   ++IL++VE QH+I+E +P+L A  GF+E  GRRL D  TTAGF+ G+ ++L+      K   +P++    ++EL   D   I + F  AS  D  ++  +     + LYPGV+ ++L+ V  S    K+    E+ R I+ DP ++
Sbjct:  134 FFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYIS 304          
BLAST of EWM24107.1 vs. NCBI_GenBank
Match: gi|585107197|gb|EWM25436.1| (hypothetical protein Naga_100005g87 [Nannochloropsis gaditana])

HSP 1 Score: 110.153 bits (274), Expect = 1.837e-23
Identity = 56/172 (32.56%), Postives = 94/172 (54.65%), Query Frame = 0
Query:   52 KPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLIN 223
            +P+ ++  +Q   K  +D ++LF     S   +A+L +VE QH+I++ +PLLAAFDGF++ITGRRL    T  GF  G+ +++         +KDP  +   ++++ A+    I   F  A  GD  A++ + +  N   +PGV+  VL+ V  +    K+    EIMR I+
Sbjct:  118 RPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFID 289          
BLAST of EWM24107.1 vs. NCBI_GenBank
Match: gi|553185360|ref|XP_005854240.1| (hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526] >gi|422294820|gb|EKU22120.1| hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 82.0333 bits (201), Expect = 6.142e-15
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 0
Query:   59 MMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKT 143
              Q   K+G+D ++LFET F S   ++IL++VE QH+I+E +P+L A  GF+E  GRRL D  TTAGF+ G+ ++L    +M KT
Sbjct:   80 FFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLL----EMFKT 160          
BLAST of EWM24107.1 vs. NCBI_GenBank
Match: gi|585102650|gb|EWM22205.1| (hypothetical protein Naga_100291g6 [Nannochloropsis gaditana])

HSP 1 Score: 79.337 bits (194), Expect = 4.610e-13
Identity = 56/220 (25.45%), Postives = 100/220 (45.45%), Query Frame = 0
Query:   25 PMRRMQSLTGVLSGAAKDVMEDTLPA--------YKPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEIT-GRRLDDAGTTAGFTAGLNSILKTLPD-MLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTE 234
            P  R+QS TG  S ++  V      +         KP +    + +  KN  + +++F+ +  + G KAILD+ + QH+++++ PLL A  GF  I   RRL    T   F+ G+N++L    D     + +P   +  L+++ A     I   F  A AG+ GA++ + +    + Y G++    + +S      K     E+M  I  D  +  A  +
Sbjct:   35 PFSRLQSTTGASSSSSSSVNSKQESSDKQTDDDFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAFED 254          
BLAST of EWM24107.1 vs. NCBI_GenBank
Match: gi|553185077|ref|XP_005854196.1| (hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526] >gi|422294860|gb|EKU22160.1| hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.0846 bits (157), Expect = 4.286e-8
Identity = 48/215 (22.33%), Postives = 90/215 (41.86%), Query Frame = 0
Query:   52 KPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEIT-GRRLD------------------------------DAGTTAGFTAGLNSILKTLPD-MLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTE 234
            KP +    + +  KN  + +++F+ +  + G KAILD+ + QH+++++ PLL A  GF  I   RRL                               +A T   F+ G+N++L    D     + +P   +  L+++ A     I   F  A AG+ GA++ + +    + Y G++    + ++      K     E+M  I  D  +  A  +
Sbjct:   70 KPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEEVRWQIRGKRRRKREGNLIYGRGNDETLNAQTKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREITKQHNGDKFKQMPEMMHFIQKDASLAKAFED 284          
The following BLAST results are available for this feature:
BLAST of EWM24107.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585105441|gb|EWM24107.1|0.000e+0100.00hypothetical protein Naga_100286g4 [Nannochloropsi... [more]
gi|553183764|ref|XP_005853961.1|0.000e+098.46hypothetical protein NGA_0461700 [Nannochloropsis ... [more]
gi|585104564|gb|EWM23494.1|1.594e-2635.09hypothetical protein Naga_100198g11 [Nannochlorops... [more]
gi|585107197|gb|EWM25436.1|1.837e-2332.56hypothetical protein Naga_100005g87 [Nannochlorops... [more]
gi|553185360|ref|XP_005854240.1|6.142e-1545.88hypothetical protein NGA_0024302 [Nannochloropsis ... [more]
gi|585102650|gb|EWM22205.1|4.610e-1325.45hypothetical protein Naga_100291g6 [Nannochloropsi... [more]
gi|553185077|ref|XP_005854196.1|4.286e-822.33hypothetical protein NGA_0186800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6581rna6581Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications