EWM24112.1, cds6562 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24112.1
Unique Name	cds6562
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002468.1:835910..836236 +
Alignment location	CM002468.1:836384..836840 +
Alignment location	CM002468.1:836988..837208 +
Alignment location	CM002468.1:837300..837484 +
Alignment location	CM002468.1:837684..837859 +
Alignment location	CM002468.1:838110..838263 +
Alignment location	CM002468.1:838504..838762 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM24112.1
Product	Protein kinase, catalytic domain protein
Orig transcript id	gnl\|cribi\|Naga_100660g2.6276.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:835910..836236 +
CM002468.1	supercontig	CM002468.1:836384..836840 +
CM002468.1	supercontig	CM002468.1:836988..837208 +
CM002468.1	supercontig	CM002468.1:837300..837484 +
CM002468.1	supercontig	CM002468.1:837684..837859 +
CM002468.1	supercontig	CM002468.1:838110..838263 +
CM002468.1	supercontig	CM002468.1:838504..838762 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016301	kinase activity
GO:0000166	nucleotide binding
GO:0005524	ATP binding
GO:0004672	protein kinase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006464	cellular protein modification process
GO:0006468	protein phosphorylation

Vocabulary: **INTERPRO**
Term	Definition
IPR011009	Kinase-like_dom
IPR000719	Prot_kinase_dom

Homology

[Close]

BLAST of EWM24112.1 vs. NCBI_GenBank
Match: gi|585105447|gb|EWM24112.1| (Protein kinase, catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1187.94 bits (3072), Expect = 0.000e+0
Identity = 592/592 (100.00%), Postives = 592/592 (100.00%), Query Frame = 0

Query:    1 MIQGGRGREGEEAQQELVEKSLPAAASRKSFSCSQISTSSSSPSSIPSSSPSSSPLRLVYCPASCFFTHPATFTVLACAENSDEWSLPLRLTRPRSGLSEEDRQERLRQVWIPERHTLPYPSTLTSSSSSLSSCSAAINAPHGPTPSSSLRLPSLRASTPSCSLPTPLPPSPDGQGTRGERITPSFLSARGLLFSLPIPRSTRREEIERRDGREGGRVGGMEGGNEDKVFHPLAETGEGKLYTFSVGHSHYVLKRYHKHAAGKALKELAVLLHLSASIRACPSSAPSVHPPFLASLCGVVWNHNNTEAGGEGESGSKEEKASRPSALVLERVLLNGQKTENRVDLRAFLVHRREAQEASLPPFLPLPLPHLLTLAEALGEALAFVHGKGLCHRDVHSGNILLSHFEEDTLPISGSVVNPLTLSCPQRPLLRIKLADFGLACSFNPLRAWLDLRALAYVLTEAAHDGVDRTGGFGDTEGASERLKQWEDFDPSERKKQWPLPARLTAKWSLSLPSPAEQVSFFSMHDLSPYFRRSLAPLLLGVFGGGEDRRQPAEGGEKGEKGRKCTQWTPLGVAAWARRERQDWSGHIRNSI 592
            MIQGGRGREGEEAQQELVEKSLPAAASRKSFSCSQISTSSSSPSSIPSSSPSSSPLRLVYCPASCFFTHPATFTVLACAENSDEWSLPLRLTRPRSGLSEEDRQERLRQVWIPERHTLPYPSTLTSSSSSLSSCSAAINAPHGPTPSSSLRLPSLRASTPSCSLPTPLPPSPDGQGTRGERITPSFLSARGLLFSLPIPRSTRREEIERRDGREGGRVGGMEGGNEDKVFHPLAETGEGKLYTFSVGHSHYVLKRYHKHAAGKALKELAVLLHLSASIRACPSSAPSVHPPFLASLCGVVWNHNNTEAGGEGESGSKEEKASRPSALVLERVLLNGQKTENRVDLRAFLVHRREAQEASLPPFLPLPLPHLLTLAEALGEALAFVHGKGLCHRDVHSGNILLSHFEEDTLPISGSVVNPLTLSCPQRPLLRIKLADFGLACSFNPLRAWLDLRALAYVLTEAAHDGVDRTGGFGDTEGASERLKQWEDFDPSERKKQWPLPARLTAKWSLSLPSPAEQVSFFSMHDLSPYFRRSLAPLLLGVFGGGEDRRQPAEGGEKGEKGRKCTQWTPLGVAAWARRERQDWSGHIRNSI
Sbjct:    1 MIQGGRGREGEEAQQELVEKSLPAAASRKSFSCSQISTSSSSPSSIPSSSPSSSPLRLVYCPASCFFTHPATFTVLACAENSDEWSLPLRLTRPRSGLSEEDRQERLRQVWIPERHTLPYPSTLTSSSSSLSSCSAAINAPHGPTPSSSLRLPSLRASTPSCSLPTPLPPSPDGQGTRGERITPSFLSARGLLFSLPIPRSTRREEIERRDGREGGRVGGMEGGNEDKVFHPLAETGEGKLYTFSVGHSHYVLKRYHKHAAGKALKELAVLLHLSASIRACPSSAPSVHPPFLASLCGVVWNHNNTEAGGEGESGSKEEKASRPSALVLERVLLNGQKTENRVDLRAFLVHRREAQEASLPPFLPLPLPHLLTLAEALGEALAFVHGKGLCHRDVHSGNILLSHFEEDTLPISGSVVNPLTLSCPQRPLLRIKLADFGLACSFNPLRAWLDLRALAYVLTEAAHDGVDRTGGFGDTEGASERLKQWEDFDPSERKKQWPLPARLTAKWSLSLPSPAEQVSFFSMHDLSPYFRRSLAPLLLGVFGGGEDRRQPAEGGEKGEKGRKCTQWTPLGVAAWARRERQDWSGHIRNSI 592

[Close]

BLAST of EWM24112.1 vs. NCBI_GenBank
Match: gi|553183767|ref|XP_005853962.1| (hypothetical protein NGA_0461800 [Nannochloropsis gaditana CCMP526] >gi|422295097|gb|EKU22396.1| hypothetical protein NGA_0461800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 246.128 bits (627), Expect = 6.581e-75
Identity = 125/131 (95.42%), Postives = 125/131 (95.42%), Query Frame = 0

Query:  221 MEGGNEDKVFHPLAETGEGKLYTFSVGHSHYVLKRYHKHAAGKALKELAVLLHLSASIRACPSSAPSVHPPFLASLCGVVWNHNNTEAGGEGESGSKEEKASRPSALVLERVLLNGQKTENRVDLRAFLVH 351
            MEGGNEDKVFHPLAE G GKLYTFSVGHSHYVLKRYHKHAAGKALKELAVLLHLSASIRACPSSAPSVHPPFLASLCGVVWNHNNTEAGGEGESGSKEEKASRPSALVLER    GQKTENRVDLRAFLVH
Sbjct:    1 MEGGNEDKVFHPLAERG-GKLYTFSVGHSHYVLKRYHKHAAGKALKELAVLLHLSASIRACPSSAPSVHPPFLASLCGVVWNHNNTEAGGEGESGSKEEKASRPSALVLER----GQKTENRVDLRAFLVH 126

HSP 2 Score: 117.087 bits (292), Expect = 1.092e-26
Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0

Query:  450 LDLRALA---YVLTEAAHDGVDRTGGFGDTEGASERLKQWEDFDPSERKKQWPLPARLTAKWSLSL 512
            +DLRA     YVLTEAAHDGVDRTGGFGDTEGASERLKQWEDFDPSERKKQWPLPARLTAK SL L
Sbjct:  118 VDLRAFLVHPYVLTEAAHDGVDRTGGFGDTEGASERLKQWEDFDPSERKKQWPLPARLTAKASLFL 183

[Close]

BLAST of EWM24112.1 vs. NCBI_GenBank
Match: gi|553177319|ref|XP_005852455.1| (hypothetical protein NGA_0717200, partial [Nannochloropsis gaditana CCMP526] >gi|422296077|gb|EKU23376.1| hypothetical protein NGA_0717200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 177.178 bits (448), Expect = 2.268e-49
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query:    1 MIQGGRGREGEEAQQELVEKSLPAAASRKSFSCSQISTSSSSPSSIPSSSPSSSPLRLVYCPASCFFTHPATFTVLACAENSDEWSLPL 89
            MIQGGRGREGEEAQQELVEKSLPAAASRKSFSCSQISTSSSSPSSIPSSSPSSSPLRLVYCPASCFFTHPATFTVLACAENSDEWSLPL
Sbjct:   47 MIQGGRGREGEEAQQELVEKSLPAAASRKSFSCSQISTSSSSPSSIPSSSPSSSPLRLVYCPASCFFTHPATFTVLACAENSDEWSLPL 135

[Close]

BLAST of EWM24112.1 vs. NCBI_GenBank
Match: gi|553178509|ref|XP_005852562.1| (hypothetical protein NGA_0728800, partial [Nannochloropsis gaditana CCMP526] >gi|422295970|gb|EKU23269.1| hypothetical protein NGA_0728800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 62.7734 bits (151), Expect = 1.981e-8
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0

Query:    1 MIQGGRGREGEEAQQELVEKSLPAAASRKSF 31
            MIQGGRGREGEEAQQELVEKSLPAAASRKSF
Sbjct:   85 MIQGGRGREGEEAQQELVEKSLPAAASRKSF 115

The following BLAST results are available for this feature:

BLAST of EWM24112.1 vs. NCBI_GenBank

BLAST of EWM24112.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4


Match Name	E-value	Identity	Description
gi\|585105447\|gb\|EWM24112.1\|	0.000e+0	100.00	Protein kinase, catalytic domain protein [Nannochl...	[more]
gi\|553183767\|ref\|XP_005853962.1\|	6.581e-75	95.42	hypothetical protein NGA_0461800 [Nannochloropsis ...	[more]
gi\|553177319\|ref\|XP_005852455.1\|	2.268e-49	100.00	hypothetical protein NGA_0717200, partial [Nannoch...	[more]
gi\|553178509\|ref\|XP_005852562.1\|	1.981e-8	100.00	hypothetical protein NGA_0728800, partial [Nannoch...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna6578	rna6578	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications