EWM24139.1, cds6536 (CDS) Nannochloropsis gaditana

Overview
NameEWM24139.1
Unique Namecds6536
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:779402..779533 -
Alignment locationCM002468.1:778308..778396 -
Alignment locationCM002468.1:778061..778139 -
Alignment locationCM002468.1:777409..777781 -
Alignment locationCM002468.1:777118..777232 -
Alignment locationCM002468.1:776384..776555 -

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Properties
Property NameValue
Protein idEWM24139.1
ProductSTART-like domain protein
Orig transcript idgnl|cribi|Naga_100306g6.2060.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:779402..779533 -
CM002468.1supercontigCM002468.1:778308..778396 -
CM002468.1supercontigCM002468.1:778061..778139 -
CM002468.1supercontigCM002468.1:777409..777781 -
CM002468.1supercontigCM002468.1:777118..777232 -
CM002468.1supercontigCM002468.1:776384..776555 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom
Homology
[Close]
BLAST of EWM24139.1 vs. NCBI_GenBank
Match: gi|585105498|gb|EWM24139.1| (START-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 651.744 bits (1680), Expect = 0.000e+0
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0 
Query:    1 MPPHVPSSPLQNLAFLPSGMENEEEGGNIVTTLLTPPPFGPPANPGEGIPLMIAEGLYLNTTPQALWEAMRVRNTLTTMPLLDPFFESYTQLKVYGPQTEIGRRSTKRLLVYGKRDFLVASFEETLSAAPSAVVPTRKGVGATEGKGRRPAHTASRKDGGGQPRPSKAFVTASISLPWSTAGDLPPDVLREEPGYVRASQDLVGYYAASGEIENAAHALIIMRTDLKGNIPHWVFSKSVGTTGMHFLQTLEAVAGAPRRRWRWVVSKIRCVLLMAARRQVLSFCLGAQNLSVEASSLHLSGLLYEATGELRLIHGDVCT 319
            MPPHVPSSPLQNLAFLPSGMENEEEGGNIVTTLLTPPPFGPPANPGEGIPLMIAEGLYLNTTPQALWEAMRVRNTLTTMPLLDPFFESYTQLKVYGPQTEIGRRSTKRLLVYGKRDFLVASFEETLSAAPSAVVPTRKGVGATEGKGRRPAHTASRKDGGGQPRPSKAFVTASISLPWSTAGDLPPDVLREEPGYVRASQDLVGYYAASGEIENAAHALIIMRTDLKGNIPHWVFSKSVGTTGMHFLQTLEAVAGAPRRRWRWVVSKIRCVLLMAARRQVLSFCLGAQNLSVEASSLHLSGLLYEATGELRLIHGDVCT
Sbjct:    1 MPPHVPSSPLQNLAFLPSGMENEEEGGNIVTTLLTPPPFGPPANPGEGIPLMIAEGLYLNTTPQALWEAMRVRNTLTTMPLLDPFFESYTQLKVYGPQTEIGRRSTKRLLVYGKRDFLVASFEETLSAAPSAVVPTRKGVGATEGKGRRPAHTASRKDGGGQPRPSKAFVTASISLPWSTAGDLPPDVLREEPGYVRASQDLVGYYAASGEIENAAHALIIMRTDLKGNIPHWVFSKSVGTTGMHFLQTLEAVAGAPRRRWRWVVSKIRCVLLMAARRQVLSFCLGAQNLSVEASSLHLSGLLYEATGELRLIHGDVCT 319
[Close]
BLAST of EWM24139.1 vs. NCBI_GenBank
Match: gi|553190776|ref|XP_005855257.1| (hypothetical protein NGA_0078600, partial [Nannochloropsis gaditana CCMP526] >gi|422293801|gb|EKU21101.1| hypothetical protein NGA_0078600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 251.136 bits (640), Expect = 8.022e-81
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0 
Query:  101 IGRRSTKRLLVYGKRDFLVASFEETLSAAPSAVVPTRKGVGATEGKGRRPAHTASRKDGGGQPRPSKAFVTASISLPWSTAGDLPPDVLREEPGYVRASQDLVGYYAASGEIENAAHALIIMRTDLKGN 229
            IGRRSTKRLLVYGKRDFLVASFEETLSAAPSAVVPTRKGVGATEGKGRRPAHTASRKDGGGQPRPSKAFVTASISLPWSTAGDLPPDVLREEPGYVRASQDLVGYYAASGEIENAAHALIIMRT  +G 
Sbjct:    1 IGRRSTKRLLVYGKRDFLVASFEETLSAAPSAVVPTRKGVGATEGKGRRPAHTASRKDGGGQPRPSKAFVTASISLPWSTAGDLPPDVLREEPGYVRASQDLVGYYAASGEIENAAHALIIMRTGRRGR 129
The following BLAST results are available for this feature:
BLAST of EWM24139.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105498|gb|EWM24139.1|0.000e+0100.00START-like domain protein [Nannochloropsis gaditan... [more]
gi|553190776|ref|XP_005855257.1|8.022e-8196.90hypothetical protein NGA_0078600, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6552rna6552Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications