EWM24143.1, cds6531 (CDS) Nannochloropsis gaditana

Overview
NameEWM24143.1
Unique Namecds6531
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:768686..768736 -
Alignment locationCM002468.1:768368..768550 -
Alignment locationCM002468.1:768205..768264 -
Alignment locationCM002468.1:767850..767912 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24143.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100306g2.2064.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:768686..768736 -
CM002468.1supercontigCM002468.1:768368..768550 -
CM002468.1supercontigCM002468.1:768205..768264 -
CM002468.1supercontigCM002468.1:767850..767912 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM24143.1 vs. NCBI_GenBank
Match: gi|553190779|ref|XP_005855258.1| (hypothetical protein NGA_0078700 [Nannochloropsis gaditana CCMP526] >gi|422293802|gb|EKU21102.1| hypothetical protein NGA_0078700 [Nannochloropsis gaditana CCMP526] >gi|585105502|gb|EWM24143.1| hypothetical protein Naga_100306g2 [Nannochloropsis gaditana])

HSP 1 Score: 238.424 bits (607), Expect = 1.282e-79
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 
Query:    1 MASHFLATVSHSESSLTLCALLLLTIICATLFVLRICFGTFSLSRVLAHFEERRHLERAYALAYQRREDSIYHRDWAKSRGAFSEAKRLDAEIEETESELDSLDDTLGNPQGILTKRQ 118
            MASHFLATVSHSESSLTLCALLLLTIICATLFVLRICFGTFSLSRVLAHFEERRHLERAYALAYQRREDSIYHRDWAKSRGAFSEAKRLDAEIEETESELDSLDDTLGNPQGILTKRQ
Sbjct:    1 MASHFLATVSHSESSLTLCALLLLTIICATLFVLRICFGTFSLSRVLAHFEERRHLERAYALAYQRREDSIYHRDWAKSRGAFSEAKRLDAEIEETESELDSLDDTLGNPQGILTKRQ 118
The following BLAST results are available for this feature:
BLAST of EWM24143.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553190779|ref|XP_005855258.1|1.282e-79100.00hypothetical protein NGA_0078700 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6547rna6547Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications