EWM24154.1, cds6517 (CDS) Nannochloropsis gaditana

Overview
NameEWM24154.1
Unique Namecds6517
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:736157..736259 -
Alignment locationCM002468.1:735796..735926 -
Alignment locationCM002468.1:735502..735630 -
Alignment locationCM002468.1:735229..735305 -
Alignment locationCM002468.1:734808..735066 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24154.1
Productshort-chain specific acyl- mitochondrial
Orig transcript idgnl|cribi|Naga_100407g1.7968.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:736157..736259 -
CM002468.1supercontigCM002468.1:735796..735926 -
CM002468.1supercontigCM002468.1:735502..735630 -
CM002468.1supercontigCM002468.1:735229..735305 -
CM002468.1supercontigCM002468.1:734808..735066 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0003995acyl-CoA dehydrogenase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR009100AcylCoA_DH/oxidase_NM_dom
IPR006089Acyl-CoA_DH_CS
IPR013786AcylCoA_DH/ox_N
IPR006091Acyl-CoA_Oxase/DH_cen-dom
Homology
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|585105522|gb|EWM24154.1| (short-chain specific acyl- mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 479.945 bits (1234), Expect = 1.531e-171
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query:    1 MLCSGSALRYNTTALLLRRGAARAAQQNLNGRARAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKGRLMRVSVIFGLSCRL 232
            MLCSGSALRYNTTALLLRRGAARAAQQNLNGRARAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKGRLMRVSVIFGLSCRL
Sbjct:    1 MLCSGSALRYNTTALLLRRGAARAAQQNLNGRARAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKGRLMRVSVIFGLSCRL 232          
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|1160119883|ref|XP_020386274.1| (LOW QUALITY PROTEIN: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Rhincodon typus])

HSP 1 Score: 275.404 bits (703), Expect = 7.907e-91
Identity = 133/214 (62.15%), Postives = 165/214 (77.10%), Query Frame = 0
Query:    5 GSALRYNTTALLLRRGAARAAQQNLNGRARAYT--SVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHK 216
            GS L     A+ +R G  R          R YT   +  LPE ++ +RD  R FA+ EL P AAQ DREH FPA+Q+K +GE+GLM + VPE+YGGAG+DY+AYAIA+EE+SRGCASTGVI SVNNSLY GP+ +FG++EQK+ W+TP+  G++IGCFGLSEPGNGSDAGAASTTA L+G+ ++LNG+KAWITN  +ASAAIVFATTDKSLKHK
Sbjct:    9 GSLLWRIPRAMTVRSGCLR----------RLYTVYQMVELPETHKLLRDTCRGFAEKELTPVAAQLDREHKFPAEQIKKMGELGLMAMDVPEKYGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSEEQKNNWITPFTDGNKIGCFGLSEPGNGSDAGAASTTAKLDGDHWILNGTKAWITNGWDASAAIVFATTDKSLKHK 212          
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|299472599|emb|CBN78251.1| (acyl-CoA dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 275.789 bits (704), Expect = 2.503e-88
Identity = 123/184 (66.85%), Postives = 153/184 (83.15%), Query Frame = 0
Query:   34 RAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
            R + + ++LPEE+  +RDM RSFAD EL PNA +WD+ H FP DQV  +GE+GLMGV++ EE GG G+DY+AYAIA+EE+SRGCASTGVI SVNNSLYC P+ +FG+ EQKD  L P+ASG+ +GCF LSEPGNGSDAGAA TTA LEG+++VL+G+KAWITNAH+A ++IVFATTD S KHKG
Sbjct:   27 RGFLTWNSLPEEHTMLRDMCRSFADNELAPNAGEWDKNHAFPKDQVAQLGELGLMGVAISEEDGGTGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYCAPIEKFGSPEQKDEHLKPFASGASLGCFALSEPGNGSDAGAARTTARLEGDQWVLDGTKAWITNAHDAQSSIVFATTDSSKKHKG 210          
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|1003963270|ref|XP_015733452.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X3 [Coturnix japonica])

HSP 1 Score: 273.478 bits (698), Expect = 3.116e-88
Identity = 129/204 (63.24%), Postives = 163/204 (79.90%), Query Frame = 0
Query:   16 LLRRGAARAAQQNLNGRARAYTSVST--LPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
            L+R GAA    + L    R +T   +  LPE ++ +R   R FA+ EL+P AAQ DREH FPA+QVK +G +GL+ V VPE++ GAG+DY+AY+IA+EE+SRGCASTGVIASVNNSLY GP+ +FG++EQK  W++P+ SG +IGCF LSEPGNGSDAGAAST A L+G+E+VLNG+KAWITNA +ASAA+VFATTDKSLKHKG
Sbjct:    8 LVRPGAALPVARALRPVRRLHTVYQSVELPETHQMLRQTCRDFAEKELMPLAAQLDREHRFPAEQVKKLGSLGLLAVEVPEQFKGAGLDYLAYSIALEEISRGCASTGVIASVNNSLYLGPILKFGSEEQKHKWISPFTSGDKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASAAVVFATTDKSLKHKG 211          
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|557757194|ref|XP_005178330.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Musca domestica])

HSP 1 Score: 274.248 bits (700), Expect = 1.120e-87
Identity = 127/195 (65.13%), Postives = 159/195 (81.54%), Query Frame = 0
Query:   23 RAAQQNLNGRARAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
            R  QQ L GR  A  S+S LPE ++ ++   R FA++ELVPNAA+ DREH++P  Q+K +GE+GLM V++PEE GG G+DY+AYAIA+EE+SRGCAS GVI SVNNSLY GP+A FG  +QK+ ++TPY +G  +GCF LSEPGNGSDAGAASTTAV +G+ +VLNG+KAWITNA+EA AA+VFATTDKSLKHKG
Sbjct:   17 RPLQQKLCGRHIA--SLSALPETHQMLQKTCRDFANSELVPNAAKCDREHLYPEQQIKKMGELGLMAVAIPEELGGTGLDYLAYAIAMEEVSRGCASAGVIMSVNNSLYLGPIAAFGNAKQKEEFITPYTTGDIVGCFALSEPGNGSDAGAASTTAVEKGDHYVLNGTKAWITNAYEAKAAVVFATTDKSLKHKG 209          
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|1003963265|ref|XP_015733451.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2 [Coturnix japonica])

HSP 1 Score: 274.248 bits (700), Expect = 1.324e-87
Identity = 129/204 (63.24%), Postives = 163/204 (79.90%), Query Frame = 0
Query:   16 LLRRGAARAAQQNLNGRARAYTSVST--LPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
            L+R GAA    + L    R +T   +  LPE ++ +R   R FA+ EL+P AAQ DREH FPA+QVK +G +GL+ V VPE++ GAG+DY+AY+IA+EE+SRGCASTGVIASVNNSLY GP+ +FG++EQK  W++P+ SG +IGCF LSEPGNGSDAGAAST A L+G+E+VLNG+KAWITNA +ASAA+VFATTDKSLKHKG
Sbjct:    8 LVRPGAALPVARALRPVRRLHTVYQSVELPETHQMLRQTCRDFAEKELMPLAAQLDREHRFPAEQVKKLGSLGLLAVEVPEQFKGAGLDYLAYSIALEEISRGCASTGVIASVNNSLYLGPILKFGSEEQKHKWISPFTSGDKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASAAVVFATTDKSLKHKG 211          
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|556948916|ref|XP_005987208.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1 [Latimeria chalumnae])

HSP 1 Score: 274.633 bits (701), Expect = 3.609e-87
Identity = 131/216 (60.65%), Postives = 164/216 (75.93%), Query Frame = 0
Query:    4 SGSALRYNTTALLLRRGAARAAQQNLNGRA--RAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
            + S  R+N  A  LRR   R        R     Y S+  LPE ++ +R   R FA+ EL P AAQ D+EH FPAD++K +GE+GL+ + VPE+YGGAG+DY+AY++A+EE+SRGCASTGVI SVNNSLY GP+ +FG++EQKD W+TP+ SG +IGCF LSEPGNGSDAGAAST A L+G+ +VLNG+KAWITNA EASA +VFATTDKSLKHKG
Sbjct:   42 TSSTFRFNMAASWLRRIPTRTVLSLRCWRKLHTVYQSIE-LPETHQMLRQTCRDFAEKELAPIAAQLDKEHKFPADKIKKMGELGLLSLYVPEKYGGAGLDYLAYSLAMEEISRGCASTGVIMSVNNSLYLGPILKFGSEEQKDQWITPFTSGDKIGCFALSEPGNGSDAGAASTVAHLDGDHWVLNGTKAWITNAWEASATVVFATTDKSLKHKG 256          
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|1003963260|ref|XP_015733450.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1 [Coturnix japonica])

HSP 1 Score: 274.248 bits (700), Expect = 5.939e-87
Identity = 129/204 (63.24%), Postives = 163/204 (79.90%), Query Frame = 0
Query:   16 LLRRGAARAAQQNLNGRARAYTSVST--LPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
            L+R GAA    + L    R +T   +  LPE ++ +R   R FA+ EL+P AAQ DREH FPA+QVK +G +GL+ V VPE++ GAG+DY+AY+IA+EE+SRGCASTGVIASVNNSLY GP+ +FG++EQK  W++P+ SG +IGCF LSEPGNGSDAGAAST A L+G+E+VLNG+KAWITNA +ASAA+VFATTDKSLKHKG
Sbjct:    8 LVRPGAALPVARALRPVRRLHTVYQSVELPETHQMLRQTCRDFAEKELMPLAAQLDREHRFPAEQVKKLGSLGLLAVEVPEQFKGAGLDYLAYSIALEEISRGCASTGVIASVNNSLYLGPILKFGSEEQKHKWISPFTSGDKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASAAVVFATTDKSLKHKG 211          
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|632962357|ref|XP_007897269.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Callorhinchus milii])

HSP 1 Score: 272.322 bits (695), Expect = 6.213e-87
Identity = 130/207 (62.80%), Postives = 165/207 (79.71%), Query Frame = 0
Query:   14 ALLLRRGAARAAQQNLNGRARAYTSV---STLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
            A LLRR A  A  ++  G  R   SV   + LP+ ++ +RD  R+FA+ EL P AAQ DREH FPA+QVK +GE+GL+ + VPE+YGG G+DY+AY IAIEE+SRGCAS+GVI SVNNSLY GP+ +FG++EQK  W+TP+ +G++IGCF LSEPGNGSDAGAASTTA L+G+ ++LNG+KAWITN+ +A AAIVFATTDKSLKHKG
Sbjct:    2 AALLRRVAGTATLRS--GCLRKLHSVYQTAELPDTHQLLRDTCRAFAEKELAPIAAQLDREHKFPAEQVKKMGELGLLAIDVPEKYGGTGLDYLAYVIAIEEISRGCASSGVILSVNNSLYLGPILKFGSEEQKQKWITPFTNGTKIGCFALSEPGNGSDAGAASTTARLDGDHWILNGTKAWITNSWDACAAIVFATTDKSLKHKG 206          
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|566009892|gb|ETI32803.1| (hypothetical protein F443_20450 [Phytophthora parasitica P1569] >gi|567947366|gb|ETK73150.1| hypothetical protein L915_19889 [Phytophthora parasitica] >gi|567976060|gb|ETL26589.1| hypothetical protein L916_19771 [Phytophthora parasitica] >gi|570313613|gb|ETO61561.1| hypothetical protein F444_20461 [Phytophthora parasitica P1976] >gi|570937370|gb|ETP02627.1| hypothetical protein F441_20326 [Phytophthora parasitica CJ01A1] >gi|570967690|gb|ETP30809.1| hypothetical protein F442_20263 [Phytophthora parasitica P10297] >gi|970627138|gb|KUF74985.1| Short-chain specific acyl-CoA dehydrogenase [Phytophthora nicotianae] >gi|970661082|gb|KUF98582.1| Zinc finger protein CONSTANS-LIKE 4 [Phytophthora nicotianae])

HSP 1 Score: 270.781 bits (691), Expect = 2.713e-86
Identity = 125/186 (67.20%), Postives = 153/186 (82.26%), Query Frame = 0
Query:   32 RARAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
            + R+   +STLPEE+  +RDM + +A   L P A + DREH +PA QVK +GEMGLMGV++ ++YGGAG+DY+AYAIA+EE+SRGCASTGV+ SVNNSLYC P+ +FGT EQK+  LTPYASG ++GCFGLSEPGNGSDAGAASTTA    + +VLNG+KAWITNAH+A  AIVFATTDKSLKHKG
Sbjct:   23 QTRSIGFLSTLPEEHAMLRDMCQQYAAKNLKPIAGELDREHKYPAKQVKELGEMGLMGVAIDDKYGGAGLDYLAYAIAMEEISRGCASTGVVMSVNNSLYCAPLDKFGTPEQKEKHLTPYASGEKLGCFGLSEPGNGSDAGAASTTARATDKGYVLNGTKAWITNAHDADQAIVFATTDKSLKHKG 208          
The following BLAST results are available for this feature:
BLAST of EWM24154.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105522|gb|EWM24154.1|1.531e-171100.00short-chain specific acyl- mitochondrial [Nannochl... [more]
gi|1160119883|ref|XP_020386274.1|7.907e-9162.15LOW QUALITY PROTEIN: short-chain specific acyl-CoA... [more]
gi|299472599|emb|CBN78251.1|2.503e-8866.85acyl-CoA dehydrogenase [Ectocarpus siliculosus][more]
gi|1003963270|ref|XP_015733452.1|3.116e-8863.24PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
gi|557757194|ref|XP_005178330.1|1.120e-8765.13PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
gi|1003963265|ref|XP_015733451.1|1.324e-8763.24PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
gi|556948916|ref|XP_005987208.1|3.609e-8760.65PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
gi|1003963260|ref|XP_015733450.1|5.939e-8763.24PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
gi|632962357|ref|XP_007897269.1|6.213e-8762.80PREDICTED: short-chain specific acyl-CoA dehydroge... [more]
gi|566009892|gb|ETI32803.1|2.713e-8667.20hypothetical protein F443_20450 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6533rna6533Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications