EWM24154.1, cds6517 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|585105522|gb|EWM24154.1| (short-chain specific acyl- mitochondrial [Nannochloropsis gaditana]) HSP 1 Score: 479.945 bits (1234), Expect = 1.531e-171 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query: 1 MLCSGSALRYNTTALLLRRGAARAAQQNLNGRARAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKGRLMRVSVIFGLSCRL 232
MLCSGSALRYNTTALLLRRGAARAAQQNLNGRARAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKGRLMRVSVIFGLSCRL
Sbjct: 1 MLCSGSALRYNTTALLLRRGAARAAQQNLNGRARAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKGRLMRVSVIFGLSCRL 232
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|1160119883|ref|XP_020386274.1| (LOW QUALITY PROTEIN: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Rhincodon typus]) HSP 1 Score: 275.404 bits (703), Expect = 7.907e-91 Identity = 133/214 (62.15%), Postives = 165/214 (77.10%), Query Frame = 0
Query: 5 GSALRYNTTALLLRRGAARAAQQNLNGRARAYT--SVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHK 216
GS L A+ +R G R R YT + LPE ++ +RD R FA+ EL P AAQ DREH FPA+Q+K +GE+GLM + VPE+YGGAG+DY+AYAIA+EE+SRGCASTGVI SVNNSLY GP+ +FG++EQK+ W+TP+ G++IGCFGLSEPGNGSDAGAASTTA L+G+ ++LNG+KAWITN +ASAAIVFATTDKSLKHK
Sbjct: 9 GSLLWRIPRAMTVRSGCLR----------RLYTVYQMVELPETHKLLRDTCRGFAEKELTPVAAQLDREHKFPAEQIKKMGELGLMAMDVPEKYGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSEEQKNNWITPFTDGNKIGCFGLSEPGNGSDAGAASTTAKLDGDHWILNGTKAWITNGWDASAAIVFATTDKSLKHK 212
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|299472599|emb|CBN78251.1| (acyl-CoA dehydrogenase [Ectocarpus siliculosus]) HSP 1 Score: 275.789 bits (704), Expect = 2.503e-88 Identity = 123/184 (66.85%), Postives = 153/184 (83.15%), Query Frame = 0
Query: 34 RAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
R + + ++LPEE+ +RDM RSFAD EL PNA +WD+ H FP DQV +GE+GLMGV++ EE GG G+DY+AYAIA+EE+SRGCASTGVI SVNNSLYC P+ +FG+ EQKD L P+ASG+ +GCF LSEPGNGSDAGAA TTA LEG+++VL+G+KAWITNAH+A ++IVFATTD S KHKG
Sbjct: 27 RGFLTWNSLPEEHTMLRDMCRSFADNELAPNAGEWDKNHAFPKDQVAQLGELGLMGVAISEEDGGTGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYCAPIEKFGSPEQKDEHLKPFASGASLGCFALSEPGNGSDAGAARTTARLEGDQWVLDGTKAWITNAHDAQSSIVFATTDSSKKHKG 210
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|1003963270|ref|XP_015733452.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X3 [Coturnix japonica]) HSP 1 Score: 273.478 bits (698), Expect = 3.116e-88 Identity = 129/204 (63.24%), Postives = 163/204 (79.90%), Query Frame = 0
Query: 16 LLRRGAARAAQQNLNGRARAYTSVST--LPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
L+R GAA + L R +T + LPE ++ +R R FA+ EL+P AAQ DREH FPA+QVK +G +GL+ V VPE++ GAG+DY+AY+IA+EE+SRGCASTGVIASVNNSLY GP+ +FG++EQK W++P+ SG +IGCF LSEPGNGSDAGAAST A L+G+E+VLNG+KAWITNA +ASAA+VFATTDKSLKHKG
Sbjct: 8 LVRPGAALPVARALRPVRRLHTVYQSVELPETHQMLRQTCRDFAEKELMPLAAQLDREHRFPAEQVKKLGSLGLLAVEVPEQFKGAGLDYLAYSIALEEISRGCASTGVIASVNNSLYLGPILKFGSEEQKHKWISPFTSGDKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASAAVVFATTDKSLKHKG 211
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|557757194|ref|XP_005178330.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Musca domestica]) HSP 1 Score: 274.248 bits (700), Expect = 1.120e-87 Identity = 127/195 (65.13%), Postives = 159/195 (81.54%), Query Frame = 0
Query: 23 RAAQQNLNGRARAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
R QQ L GR A S+S LPE ++ ++ R FA++ELVPNAA+ DREH++P Q+K +GE+GLM V++PEE GG G+DY+AYAIA+EE+SRGCAS GVI SVNNSLY GP+A FG +QK+ ++TPY +G +GCF LSEPGNGSDAGAASTTAV +G+ +VLNG+KAWITNA+EA AA+VFATTDKSLKHKG
Sbjct: 17 RPLQQKLCGRHIA--SLSALPETHQMLQKTCRDFANSELVPNAAKCDREHLYPEQQIKKMGELGLMAVAIPEELGGTGLDYLAYAIAMEEVSRGCASAGVIMSVNNSLYLGPIAAFGNAKQKEEFITPYTTGDIVGCFALSEPGNGSDAGAASTTAVEKGDHYVLNGTKAWITNAYEAKAAVVFATTDKSLKHKG 209
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|1003963265|ref|XP_015733451.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2 [Coturnix japonica]) HSP 1 Score: 274.248 bits (700), Expect = 1.324e-87 Identity = 129/204 (63.24%), Postives = 163/204 (79.90%), Query Frame = 0
Query: 16 LLRRGAARAAQQNLNGRARAYTSVST--LPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
L+R GAA + L R +T + LPE ++ +R R FA+ EL+P AAQ DREH FPA+QVK +G +GL+ V VPE++ GAG+DY+AY+IA+EE+SRGCASTGVIASVNNSLY GP+ +FG++EQK W++P+ SG +IGCF LSEPGNGSDAGAAST A L+G+E+VLNG+KAWITNA +ASAA+VFATTDKSLKHKG
Sbjct: 8 LVRPGAALPVARALRPVRRLHTVYQSVELPETHQMLRQTCRDFAEKELMPLAAQLDREHRFPAEQVKKLGSLGLLAVEVPEQFKGAGLDYLAYSIALEEISRGCASTGVIASVNNSLYLGPILKFGSEEQKHKWISPFTSGDKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASAAVVFATTDKSLKHKG 211
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|556948916|ref|XP_005987208.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1 [Latimeria chalumnae]) HSP 1 Score: 274.633 bits (701), Expect = 3.609e-87 Identity = 131/216 (60.65%), Postives = 164/216 (75.93%), Query Frame = 0
Query: 4 SGSALRYNTTALLLRRGAARAAQQNLNGRA--RAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
+ S R+N A LRR R R Y S+ LPE ++ +R R FA+ EL P AAQ D+EH FPAD++K +GE+GL+ + VPE+YGGAG+DY+AY++A+EE+SRGCASTGVI SVNNSLY GP+ +FG++EQKD W+TP+ SG +IGCF LSEPGNGSDAGAAST A L+G+ +VLNG+KAWITNA EASA +VFATTDKSLKHKG
Sbjct: 42 TSSTFRFNMAASWLRRIPTRTVLSLRCWRKLHTVYQSIE-LPETHQMLRQTCRDFAEKELAPIAAQLDKEHKFPADKIKKMGELGLLSLYVPEKYGGAGLDYLAYSLAMEEISRGCASTGVIMSVNNSLYLGPILKFGSEEQKDQWITPFTSGDKIGCFALSEPGNGSDAGAASTVAHLDGDHWVLNGTKAWITNAWEASATVVFATTDKSLKHKG 256
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|1003963260|ref|XP_015733450.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1 [Coturnix japonica]) HSP 1 Score: 274.248 bits (700), Expect = 5.939e-87 Identity = 129/204 (63.24%), Postives = 163/204 (79.90%), Query Frame = 0
Query: 16 LLRRGAARAAQQNLNGRARAYTSVST--LPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
L+R GAA + L R +T + LPE ++ +R R FA+ EL+P AAQ DREH FPA+QVK +G +GL+ V VPE++ GAG+DY+AY+IA+EE+SRGCASTGVIASVNNSLY GP+ +FG++EQK W++P+ SG +IGCF LSEPGNGSDAGAAST A L+G+E+VLNG+KAWITNA +ASAA+VFATTDKSLKHKG
Sbjct: 8 LVRPGAALPVARALRPVRRLHTVYQSVELPETHQMLRQTCRDFAEKELMPLAAQLDREHRFPAEQVKKLGSLGLLAVEVPEQFKGAGLDYLAYSIALEEISRGCASTGVIASVNNSLYLGPILKFGSEEQKHKWISPFTSGDKIGCFALSEPGNGSDAGAASTVARLDGDEWVLNGTKAWITNAWDASAAVVFATTDKSLKHKG 211
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|632962357|ref|XP_007897269.1| (PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial [Callorhinchus milii]) HSP 1 Score: 272.322 bits (695), Expect = 6.213e-87 Identity = 130/207 (62.80%), Postives = 165/207 (79.71%), Query Frame = 0
Query: 14 ALLLRRGAARAAQQNLNGRARAYTSV---STLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
A LLRR A A ++ G R SV + LP+ ++ +RD R+FA+ EL P AAQ DREH FPA+QVK +GE+GL+ + VPE+YGG G+DY+AY IAIEE+SRGCAS+GVI SVNNSLY GP+ +FG++EQK W+TP+ +G++IGCF LSEPGNGSDAGAASTTA L+G+ ++LNG+KAWITN+ +A AAIVFATTDKSLKHKG
Sbjct: 2 AALLRRVAGTATLRS--GCLRKLHSVYQTAELPDTHQLLRDTCRAFAEKELAPIAAQLDREHKFPAEQVKKMGELGLLAIDVPEKYGGTGLDYLAYVIAIEEISRGCASSGVILSVNNSLYLGPILKFGSEEQKQKWITPFTNGTKIGCFALSEPGNGSDAGAASTTARLDGDHWILNGTKAWITNSWDACAAIVFATTDKSLKHKG 206
BLAST of EWM24154.1 vs. NCBI_GenBank
Match: gi|566009892|gb|ETI32803.1| (hypothetical protein F443_20450 [Phytophthora parasitica P1569] >gi|567947366|gb|ETK73150.1| hypothetical protein L915_19889 [Phytophthora parasitica] >gi|567976060|gb|ETL26589.1| hypothetical protein L916_19771 [Phytophthora parasitica] >gi|570313613|gb|ETO61561.1| hypothetical protein F444_20461 [Phytophthora parasitica P1976] >gi|570937370|gb|ETP02627.1| hypothetical protein F441_20326 [Phytophthora parasitica CJ01A1] >gi|570967690|gb|ETP30809.1| hypothetical protein F442_20263 [Phytophthora parasitica P10297] >gi|970627138|gb|KUF74985.1| Short-chain specific acyl-CoA dehydrogenase [Phytophthora nicotianae] >gi|970661082|gb|KUF98582.1| Zinc finger protein CONSTANS-LIKE 4 [Phytophthora nicotianae]) HSP 1 Score: 270.781 bits (691), Expect = 2.713e-86 Identity = 125/186 (67.20%), Postives = 153/186 (82.26%), Query Frame = 0
Query: 32 RARAYTSVSTLPEEYRSIRDMVRSFADTELVPNAAQWDREHVFPADQVKAIGEMGLMGVSVPEEYGGAGMDYMAYAIAIEELSRGCASTGVIASVNNSLYCGPVAQFGTDEQKDTWLTPYASGSQIGCFGLSEPGNGSDAGAASTTAVLEGEEFVLNGSKAWITNAHEASAAIVFATTDKSLKHKG 217
+ R+ +STLPEE+ +RDM + +A L P A + DREH +PA QVK +GEMGLMGV++ ++YGGAG+DY+AYAIA+EE+SRGCASTGV+ SVNNSLYC P+ +FGT EQK+ LTPYASG ++GCFGLSEPGNGSDAGAASTTA + +VLNG+KAWITNAH+A AIVFATTDKSLKHKG
Sbjct: 23 QTRSIGFLSTLPEEHAMLRDMCQQYAAKNLKPIAGELDREHKYPAKQVKELGEMGLMGVAIDDKYGGAGLDYLAYAIAMEEISRGCASTGVVMSVNNSLYCAPLDKFGTPEQKEKHLTPYASGEKLGCFGLSEPGNGSDAGAASTTARATDKGYVLNGTKAWITNAHDADQAIVFATTDKSLKHKG 208 The following BLAST results are available for this feature:
BLAST of EWM24154.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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