EWM24183.1, cds6489 (CDS) Nannochloropsis gaditana

Overview
NameEWM24183.1
Unique Namecds6489
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:669112..669375 -
Alignment locationCM002468.1:667271..668746 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24183.1
ProductRNA helicase, DEAD-box type
Orig transcript idgnl|cribi|Naga_100390g2.3634.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:669112..669375 -
CM002468.1supercontigCM002468.1:667271..668746 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR000629RNA-helicase_DEAD-box_CS
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM24183.1 vs. NCBI_GenBank
Match: gi|585105568|gb|EWM24183.1| (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 1168.3 bits (3021), Expect = 0.000e+0
Identity = 579/579 (100.00%), Postives = 579/579 (100.00%), Query Frame = 0
Query:    1 MEDLFRALRAGTKFKKTSQPGACAAANKHHGTRTSLSLSSPSLSTCGPPTNTNTSSPSAALDFFRSAALPDEQKKKRPRGGGGRMGEKHEEDEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDASLKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLKKGGKKKGREGGREGGRGRGRISTRTAWDVEKAKRRKEGRAQGGGGMKKK 579
            MEDLFRALRAGTKFKKTSQPGACAAANKHHGTRTSLSLSSPSLSTCGPPTNTNTSSPSAALDFFRSAALPDEQKKKRPRGGGGRMGEKHEEDEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDASLKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLKKGGKKKGREGGREGGRGRGRISTRTAWDVEKAKRRKEGRAQGGGGMKKK
Sbjct:    1 MEDLFRALRAGTKFKKTSQPGACAAANKHHGTRTSLSLSSPSLSTCGPPTNTNTSSPSAALDFFRSAALPDEQKKKRPRGGGGRMGEKHEEDEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDASLKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLKKGGKKKGREGGREGGRGRGRISTRTAWDVEKAKRRKEGRAQGGGGMKKK 579          
BLAST of EWM24183.1 vs. NCBI_GenBank
Match: gi|553193361|ref|XP_005855760.1| (putative dead box rna helicase [Nannochloropsis gaditana CCMP526] >gi|422293301|gb|EKU20601.1| putative dead box rna helicase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 571.237 bits (1471), Expect = 0.000e+0
Identity = 288/289 (99.65%), Postives = 289/289 (100.00%), Query Frame = 0
Query:  156 MGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAV 444
            MGRDLLATAPTGSGKTAAFVLPTLLRLEKAEA+LLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAV
Sbjct:    1 MGRDLLATAPTGSGKTAAFVLPTLLRLEKAEARLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAV 289          
BLAST of EWM24183.1 vs. NCBI_GenBank
Match: gi|1173955144|gb|OQS02182.1| (DEAD/DEAH box RNA helicase [Thraustotheca clavata])

HSP 1 Score: 443.351 bits (1139), Expect = 3.707e-147
Identity = 220/478 (46.03%), Postives = 319/478 (66.74%), Query Frame = 0
Query:   89 HEEDEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDASLKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLKKGGKKKGREGGREGGRGRGRISTRTAWDVEKAKRRK 566
            +  D+++  R+RL I   G  VPD +  F+ +     S+K  LL NIESS++K PT IQMQA+P +   RD+L  APTGSGKTAAF +P LL LE  +     +G R+++LAPTRELA QI GE QRL++G+ F ++++SKA A+T     +     YD+++ATP+RL+  + E  + L +V  + LDEAD+LFE+G                 F+ Q+DE+ AACT P +QR +FSAT+   ++++A SVL+DPV V++G+ +       A A+  ++ Q L+FVG+EEGKL+A++QL+++G+  P+L+F++NK+RA+ELYHEL YD + V  +HADR+ EQR  +++  R GAVWVL+CTDL +RG+D + VN+V+NYD P S V+Y+HR+GRTGR GR G AVTF+TE DM     LR IANV+KLSG  VP WM  +KK   ++ R+   +    R RI T + +D++KA   K
Sbjct:   51 NHNDDIKHLRKRLNIAVWGTVVPDPIVEFAQMKAA-KSIKSVLLTNIESSEYKNPTAIQMQAIPAILQKRDVLGIAPTGSGKTAAFAIPMLLNLETPQQD---HGIRSIVLAPTRELAVQIHGEFQRLSSGKKFHISLLSKASASTMASHAKTCTVNYDIVIATPLRLVHLISEQSIPLDKVEMICLDEADRLFEMG-----------------FVEQIDEVFAACTNPSLQRMMFSATMLQGVEEMAQSVLKDPVKVAIGVKN-------AGAI--TINQRLMFVGKEEGKLVAMKQLIQEGLKLPVLMFVQNKDRAKELYHELVYDGINVGAIHADRTKEQRDKVIKDFRTGAVWVLICTDLMSRGIDFKGVNMVINYDFPQSAVSYIHRIGRTGRNGRKGEAVTFFTESDM---IYLRTIANVMKLSGCDVPDWMLAMKKASVRQ-RKQLLKAPPKRHRIETVSGYDLKKAHNHK 494          
BLAST of EWM24183.1 vs. NCBI_GenBank
Match: gi|673038498|ref|XP_008873210.1| (hypothetical protein H310_09031 [Aphanomyces invadans] >gi|574471327|gb|ETV98335.1| hypothetical protein H310_09031 [Aphanomyces invadans])

HSP 1 Score: 445.662 bits (1145), Expect = 3.457e-146
Identity = 221/480 (46.04%), Postives = 317/480 (66.04%), Query Frame = 0
Query:   92 DEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDASLKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLKKGGKKKGREGGREGGRGRGRISTRTAWDVEKAKRRKEGRAQ 571
            D+++A RRRL I   G  VPD +  F+ +     +LK  +LRNIE SQ+K PTPIQMQ++P +   RD+L  APTGSGKTAAF +P LL L   + +    G R+++L PTRELA QI  E QRL+ GR F + ++SKA AAT     +     YD+++ATP+RL+  + +  V L  V  + LDEAD+LFE+G                 F+ Q+D+I AACT P++QR +FSAT+   ++++A SVL+DP+ +S+G  +         A   ++TQ+L+FVG+EEGKL+A++QL+++G+  P+L+F++NK+RA+ELY EL YD + V  +HADR+ EQR  +++  R G VWVL+CTDL +RG+D + VN+V+N+D P S V+Y+HR+GRTGR GR G AVTF+TE DM     LR IANV+KLSG  VP WM  LKK   +K R+   +    R RI T + +D++KA +R+  RA+
Sbjct:  193 DDIKALRRRLNIYVEGTVVPDPILEFAQMKTNATALKAVVLRNIEESQYKNPTPIQMQSIPAILKQRDVLGIAPTGSGKTAAFAIPMLLNLGAPDVR----GIRSVVLVPTRELAVQIHAEFQRLSVGRKFHIVLLSKASAATISSHSKTCTVNYDIVIATPLRLVHLIHKENVTLDTVDMICLDEADRLFEMG-----------------FVEQIDDIFAACTNPKMQRMMFSATMLQGVEEMAQSVLKDPIKISIGTKN---------AGASTITQKLMFVGKEEGKLVAMKQLIQEGLKLPVLLFVQNKDRAKELYQELVYDGINVGAIHADRTKEQRDKVIKDFRTGVVWVLICTDLMSRGIDFKGVNMVINFDFPQSAVSYIHRIGRTGRNGRPGEAVTFFTENDMV---YLRTIANVMKLSGCDVPPWMLNLKKASMRK-RKQLLKAPPERHRIETVSGYDLQKANKRRLMRAK 638          
BLAST of EWM24183.1 vs. NCBI_GenBank
Match: gi|1173954011|gb|OQS01510.1| (DEAD/DEAH box RNA helicase [Achlya hypogyna])

HSP 1 Score: 445.662 bits (1145), Expect = 4.285e-146
Identity = 223/476 (46.85%), Postives = 316/476 (66.39%), Query Frame = 0
Query:   90 EEDEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDASLKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLKKGGKKKGREGGREGGRGRGRISTRTAWDVEKAKRR 565
              D+++  R+RL I   G  VPD +  F+ +  P A L+  +L NIE+SQ+K PTPIQMQA+P    GRD+L  APTGSGKTAAF +P LL LE   A     G R+++L PTRELA QI GE QRLA GR F ++++SKA AAT     +     YD+++ATP+RL+  + E +V L  V  + LDEAD+LFE+G                 F+ Q+DE+ AACT P +QR +FSAT+   ++D+A SVL+DP+ +++G  +  +N         ++TQ L+FVG+EEGKL+A++QL+++G+  P+L+F++NK+RA+ELY EL YD + V  +HADR+ EQR  +++  R G+VWVL+CTDL ARG+D + VN+V+NYD P S V+Y+HR+GRTGR GR G AVTF+TE DM     LR IANV+KLSG  VP WM  +KK   ++ R+   +    R RI T + +D++KA ++
Sbjct:  194 HSDDIKQLRKRLNISTWGTAVPDPIVEFAEMKGP-AGLRGVVLANIEASQYKNPTPIQMQAIPAALQGRDVLGIAPTGSGKTAAFAIPMLLNLE---APRQDQGIRSIVLVPTRELAVQIHGEFQRLAHGRKFHISLLSKASAATMASHAKACTVNYDVVIATPLRLVHLITESKVALDTVNMICLDEADRLFEMG-----------------FVEQIDEVFAACTNPSLQRMMFSATMLEGVEDMAQSVLKDPIKIAIGTKNAGAN---------TITQRLLFVGKEEGKLVAMKQLVQEGLKLPVLMFVQNKDRAKELYQELMYDGINVGAIHADRTKEQRDKVIKDFRTGSVWVLICTDLMARGIDFKGVNMVINYDFPQSAVSYIHRIGRTGRNGRQGEAVTFFTESDMV---YLRTIANVMKLSGCDVPDWMLSMKKASVRQ-RKQLLKAPPQRHRIKTVSGYDLKKAHKK 635          
BLAST of EWM24183.1 vs. NCBI_GenBank
Match: gi|298708634|emb|CBJ26121.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 440.654 bits (1132), Expect = 4.845e-146
Identity = 233/437 (53.32%), Postives = 310/437 (70.94%), Query Frame = 0
Query:   92 DEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDAS-----LKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEA----GQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSG 519
            +E+  FRRR+ IK +GE V D + SFS +P    S      +R LL N+E S WKEPTP+QMQA+P+L  GRDLLA APTGSGKTAAFV+P +LRL    A    +G R +LLAPTRELA+QI  +V RL+ GR  +V +++KA A     A     +   SGYD++V+TPMRL+  +RE  V L  V  VVLDEADKLF+ G      A+G S   DK+F+GQVDE+LAAC++ +VQRALFSAT+   +++L+ SVLRDP+ ++VG        T  A   + + Q LV+VGREEGKLLA+RQL+++G+ PP+LVFL++K+RA+ L+HEL YD +  DVMHA R+ +QR  ++++ R G +WVL+CTDL ARG+D + VN+V+NYD P S V+Y+HR+GRTGRAGR G AVT +TE DM    SLR+IANVI+LSG
Sbjct:   35 EEVACFRRRMGIKVKGEEVADPMESFSEMPSATTSEDAGQTRRVLLHNVEESAWKEPTPVQMQAVPILVAGRDLLAAAPTGSGKTAAFVMPMILRLGVQRADPQASGVRGILLAPTRELAAQIHRDVVRLSRGRRLRVCLLTKAGATKAAAATGMDSRNALSGYDIVVSTPMRLVALVRERAVCLASVEMVVLDEADKLFDAG-----AASGGS---DKAFIGQVDEVLAACSHQQVQRALFSATVGQQVKELSESVLRDPIFLTVG--------TQNAGAAD-IDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINTDVMHASRTQDQRDNIIQRFRTGEIWVLICTDLVARGIDFKGVNMVINYDFPQSAVSYIHRIGRTGRAGRHGVAVTLFTESDMN---SLRSIANVIRLSG 451          
BLAST of EWM24183.1 vs. NCBI_GenBank
Match: gi|566013170|gb|ETI36081.1| (hypothetical protein F443_17720 [Phytophthora parasitica P1569] >gi|568008758|gb|ETL82973.1| hypothetical protein L917_16977 [Phytophthora parasitica])

HSP 1 Score: 445.277 bits (1144), Expect = 1.697e-145
Identity = 232/483 (48.03%), Postives = 325/483 (67.29%), Query Frame = 0
Query:   90 EEDEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDAS----LKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAAT-KDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLKKGGKKKGREGGREGGRGRGRISTRTAWDVEKAKRRKE 567
            E++E++  RR+L I+  G +VP  + SF+ +    ++    +KR LL+NIE S++KEPT +QMQA+P   + RD+LATAPTGSGKTAAF +P L  L  A      +G R+++LAPTR+LA QI  E  RLAAG+   + ++SKA AAT   +    +   +D+L+ATP+RL+  ++E +VDL  V  V LDEAD+L ELG                 F+ QVDEI AACT+P VQRA+FSAT+   +++LA +VLRDPV V+VG  +         A   ++ Q+LVFVG+EEGKL+A++QLL++G+  P L+F++NKERA ELYHEL YD + +  +HADR+ EQR  ++ + R G VWVL+CTDL +RG+D +AVN+V+NYD P S V+Y+HR+GRTGR GR G+AVTF+TE DM     LR IANV+K+SG +VP WM  LKK    K +E  +     R RI+T + +D++KA R K+
Sbjct:  214 EQEEVQMLRRQLGIRVSGVSVPAPITSFADMRLDSSASAQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANL--AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVNHDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG-----------------FVEQVDEIFAACTHPRVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKN---------AGASTIDQKLVFVGKEEGKLVAMKQLLQEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYIHRIGRTGRNGRKGKAVTFFTEDDM---VYLRTIANVMKISGCEVPDWMLSLKKASVSKRKELLK-APPTRHRINTVSGYDLQKANRLKQ 664          
BLAST of EWM24183.1 vs. NCBI_GenBank
Match: gi|570970893|gb|ETP34012.1| (hypothetical protein F442_17576 [Phytophthora parasitica P10297])

HSP 1 Score: 445.277 bits (1144), Expect = 2.404e-145
Identity = 232/483 (48.03%), Postives = 325/483 (67.29%), Query Frame = 0
Query:   90 EEDEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDAS----LKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAAT-KDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLKKGGKKKGREGGREGGRGRGRISTRTAWDVEKAKRRKE 567
            E++E++  RR+L I+  G +VP  + SF+ +    ++    +KR LL+NIE S++KEPT +QMQA+P   + RD+LATAPTGSGKTAAF +P L  L  A      +G R+++LAPTR+LA QI  E  RLAAG+   + ++SKA AAT   +    +   +D+L+ATP+RL+  ++E +VDL  V  V LDEAD+L ELG                 F+ QVDEI AACT+P VQRA+FSAT+   +++LA +VLRDPV V+VG  +         A   ++ Q+LVFVG+EEGKL+A++QLL++G+  P L+F++NKERA ELYHEL YD + +  +HADR+ EQR  ++ + R G VWVL+CTDL +RG+D +AVN+V+NYD P S V+Y+HR+GRTGR GR G+AVTF+TE DM     LR IANV+K+SG +VP WM  LKK    K +E  +     R RI+T + +D++KA R K+
Sbjct:  214 EQEEVQMLRRQLGIRVSGVSVPAPITSFADMRLDSSASAQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANL--AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVNHDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG-----------------FVEQVDEIFAACTHPRVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKN---------AGASTIDQKLVFVGKEEGKLVAMKQLLQEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYIHRIGRTGRNGRKGKAVTFFTEDDM---VYLRTIANVMKISGCEVPDWMLSLKKASVSKRKELLK-APPTRHRINTVSGYDLQKANRLKQ 664          
BLAST of EWM24183.1 vs. NCBI_GenBank
Match: gi|675174649|ref|XP_008896209.1| (hypothetical protein PPTG_04135 [Phytophthora parasitica INRA-310] >gi|568103904|gb|ETN18561.1| hypothetical protein PPTG_04135 [Phytophthora parasitica INRA-310])

HSP 1 Score: 445.277 bits (1144), Expect = 2.813e-145
Identity = 232/483 (48.03%), Postives = 325/483 (67.29%), Query Frame = 0
Query:   90 EEDEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDAS----LKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAAT-KDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLKKGGKKKGREGGREGGRGRGRISTRTAWDVEKAKRRKE 567
            E++E++  RR+L I+  G +VP  + SF+ +    ++    +KR LL+NIE S++KEPT +QMQA+P   + RD+LATAPTGSGKTAAF +P L  L  A      +G R+++LAPTR+LA QI  E  RLAAG+   + ++SKA AAT   +    +   +D+L+ATP+RL+  ++E +VDL  V  V LDEAD+L ELG                 F+ QVDEI AACT+P VQRA+FSAT+   +++LA +VLRDPV V+VG  +         A   ++ Q+LVFVG+EEGKL+A++QLL++G+  P L+F++NKERA ELYHEL YD + +  +HADR+ EQR  ++ + R G VWVL+CTDL +RG+D +AVN+V+NYD P S V+Y+HR+GRTGR GR G+AVTF+TE DM     LR IANV+K+SG +VP WM  LKK    K +E  +     R RI+T + +D++KA R K+
Sbjct:  214 EQEEVQMLRRQLGIRVSGVSVPAPITSFADMRLDSSASAQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANL--AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVNHDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG-----------------FVEQVDEIFAACTHPRVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKN---------AGASTIDQKLVFVGKEEGKLVAMKQLLQEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYIHRIGRTGRNGRKGKAVTFFTEDDM---VYLRTIANVMKISGCEVPDWMLSLKKASVSKRKELLK-APPTRHRINTVSGYDLQKANRLKQ 664          
BLAST of EWM24183.1 vs. NCBI_GenBank
Match: gi|568038678|gb|ETM36199.1| (hypothetical protein L914_17051 [Phytophthora parasitica])

HSP 1 Score: 443.736 bits (1140), Expect = 8.554e-145
Identity = 231/483 (47.83%), Postives = 324/483 (67.08%), Query Frame = 0
Query:   90 EEDEMRAFRRRLRIKARGENVPDCLPSFSLLPCPDAS----LKRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAAT-KDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERARELYHELCYDHLRVDVMHADRSTEQRAALLEKVRAGAVWVLLCTDLCARGLDLRAVNVVVNYDLPPSCVTYVHRVGRTGRAGRAGRAVTFWTERDMEEGGSLRAIANVIKLSGGQVPSWMAGLKKGGKKKGREGGREGGRGRGRISTRTAWDVEKAKRRKE 567
            E++E++  RR+L I+  G +VP  + SF+ +    ++    +KR LL+NIE S++KEPT +QMQA+P   + RD+LATAPTGSGKTAAF +P L  L  A      +G R+++LAPTR+LA QI  E  RLAAG+   + ++SKA AAT   +    +   +D+L+ATP+RL+  ++E +VDL  V  V LDEAD+L ELG                 F+ QVDEI  ACT+P VQRA+FSAT+   +++LA +VLRDPV V+VG  +         A   ++ Q+LVFVG+EEGKL+A++QLL++G+  P L+F++NKERA ELYHEL YD + +  +HADR+ EQR  ++ + R G VWVL+CTDL +RG+D +AVN+V+NYD P S V+Y+HR+GRTGR GR G+AVTF+TE DM     LR IANV+K+SG +VP WM  LKK    K +E  +     R RI+T + +D++KA R K+
Sbjct:  214 EQEEVQMLRRQLGIRVSGVSVPAPITSFADMRLDSSASAQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANL--AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVNHDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG-----------------FVEQVDEIFGACTHPRVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKN---------AGASTIDQKLVFVGKEEGKLVAMKQLLQEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYIHRIGRTGRNGRKGKAVTFFTEDDM---VYLRTIANVMKISGCEVPDWMLSLKKASVSKRKELLK-APPTRHRINTVSGYDLQKANRLKQ 664          
The following BLAST results are available for this feature:
BLAST of EWM24183.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105568|gb|EWM24183.1|0.000e+0100.00RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
gi|553193361|ref|XP_005855760.1|0.000e+099.65putative dead box rna helicase [Nannochloropsis ga... [more]
gi|1173955144|gb|OQS02182.1|3.707e-14746.03DEAD/DEAH box RNA helicase [Thraustotheca clavata][more]
gi|673038498|ref|XP_008873210.1|3.457e-14646.04hypothetical protein H310_09031 [Aphanomyces invad... [more]
gi|1173954011|gb|OQS01510.1|4.285e-14646.85DEAD/DEAH box RNA helicase [Achlya hypogyna][more]
gi|298708634|emb|CBJ26121.1|4.845e-14653.32DEAD box helicase [Ectocarpus siliculosus][more]
gi|566013170|gb|ETI36081.1|1.697e-14548.03hypothetical protein F443_17720 [Phytophthora para... [more]
gi|570970893|gb|ETP34012.1|2.404e-14548.03hypothetical protein F442_17576 [Phytophthora para... [more]
gi|675174649|ref|XP_008896209.1|2.813e-14548.03hypothetical protein PPTG_04135 [Phytophthora para... [more]
gi|568038678|gb|ETM36199.1|8.554e-14547.83hypothetical protein L914_17051 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6505rna6505Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications