EWM24243.1, cds6458 (CDS) Nannochloropsis gaditana

Overview
NameEWM24243.1
Unique Namecds6458
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:590862..590985 -
Alignment locationCM002468.1:590600..590736 -
Alignment locationCM002468.1:590337..590349 -
Alignment locationCM002468.1:590261..590277 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24243.1
Productmitotic cohesin
Orig transcript idgnl|cribi|Naga_100020g2.5376.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:590862..590985 -
CM002468.1supercontigCM002468.1:590600..590736 -
CM002468.1supercontigCM002468.1:590337..590349 -
CM002468.1supercontigCM002468.1:590261..590277 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0003682chromatin binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR006910Rad21_Rec8_N
Homology
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|585105634|gb|EWM24243.1| (mitotic cohesin [Nannochloropsis gaditana])

HSP 1 Score: 196.823 bits (499), Expect = 8.066e-64
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query:    1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPELRPV 96
            MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPELRPV
Sbjct:    1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPELRPV 96          
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|224007903|ref|XP_002292911.1| (hypothetical protein THAPSDRAFT_263720, partial [Thalassiosira pseudonana CCMP1335] >gi|220971773|gb|EED90107.1| hypothetical protein THAPSDRAFT_263720, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 149.443 bits (376), Expect = 3.718e-45
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 0
Query:    1 MFFASSLLTKKGPLGKVWLAAHW-DKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
            MF++  +L KKGPLGKVWLAAHW DKK+T+ Q+F TDI  SVDSIV+PTVPLALRVSGHLLLGVVRIYSRKV+YLM DC +A+ KIKMAFRP
Sbjct:    1 MFYSQIILAKKGPLGKVWLAAHWGDKKITRPQIFSTDIATSVDSIVNPTVPLALRVSGHLLLGVVRIYSRKVRYLMHDCHEAMVKIKMAFRP 92          
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|397577477|gb|EJK50596.1| (hypothetical protein THAOC_30369 [Thalassiosira oceanica])

HSP 1 Score: 151.369 bits (381), Expect = 1.053e-43
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 0
Query:    1 MFFASSLLTKKGPLGKVWLAAHW-DKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPE 92
            MF++  +L KKGPLGKVWLAAHW DKKL + Q+F TDI+ SVDSIV+PTVPLALRVSGHLLLGVVRIYSRKVKYLM DC +A+ KIKMAF+P+
Sbjct:    1 MFYSQIILAKKGPLGKVWLAAHWGDKKLGRPQIFNTDISASVDSIVNPTVPLALRVSGHLLLGVVRIYSRKVKYLMTDCHEAMVKIKMAFKPD 93          
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|635364966|emb|CCI46618.1| (unnamed protein product [Albugo candida] >gi|635368785|emb|CCI43090.1| unnamed protein product [Albugo candida])

HSP 1 Score: 156.377 bits (394), Expect = 6.305e-43
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 0
Query:    1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPEL 93
            MF++  +L KKGPLGK+WLAAHWDKKL K Q+F  DI  SVDSIV+P VPLALRVSGHLLLGVVRIYSRKVKYL  DCS+AL KIK+AFRP L
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKHQIFTADIQSSVDSIVNPQVPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRPGL 93          
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|325183853|emb|CCA18311.1| (doublestrandbreak repair protein rad21 putative [Albugo laibachii Nc14] >gi|325183958|emb|CCA18416.1| doublestrandbreak repair protein rad21 putative [Albugo laibachii Nc14])

HSP 1 Score: 155.221 bits (391), Expect = 1.525e-42
Identity = 70/93 (75.27%), Postives = 79/93 (84.95%), Query Frame = 0
Query:    1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPEL 93
            MF++  +L KKGPLGK+WLAAHWDKKL K Q+F  DI  SVDSIV+P VPLALRV+GHLLLGVVRIYSRKVKYL  DCS+AL KIK+AFRP L
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKHQIFTADIQSSVDSIVNPQVPLALRVTGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRPGL 93          
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|219115091|ref|XP_002178341.1| (mitotic cohesin [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410076|gb|EEC50006.1| mitotic cohesin [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 155.606 bits (392), Expect = 2.228e-42
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 0
Query:    1 MFFASSLLTKKGPLGKVWLAAHW-DKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
            MF++  +L KKGPLGKVW+AAHW DKKL + Q+F TDI+ SVDSIVHP VPLALRVSGHLLLGVVRIYSRKVKYLM DC +A+ KIKMAFRP
Sbjct:    1 MFYSQIILAKKGPLGKVWMAAHWGDKKLGRPQIFATDISASVDSIVHPQVPLALRVSGHLLLGVVRIYSRKVKYLMHDCHEAMVKIKMAFRP 92          
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|695442312|ref|XP_009533423.1| (hypothetical protein PHYSODRAFT_519994 [Phytophthora sojae] >gi|348670857|gb|EGZ10678.1| hypothetical protein PHYSODRAFT_519994 [Phytophthora sojae])

HSP 1 Score: 153.295 bits (386), Expect = 7.493e-42
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 0
Query:    1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
            MF++  +L KKGPLGK+WLAAHWDKKL K Q+F  DI  SV SIV+P VPLALRVSGHLLLGVVRIYSRKVKYL  DCS+AL KIK+AFRP
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFSADIHSSVQSIVNPQVPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRP 91          
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|196008671|ref|XP_002114201.1| (hypothetical protein TRIADDRAFT_58420 [Trichoplax adhaerens] >gi|190583220|gb|EDV23291.1| hypothetical protein TRIADDRAFT_58420 [Trichoplax adhaerens])

HSP 1 Score: 141.739 bits (356), Expect = 1.434e-41
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 0
Query:    1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
            MF+A  +L+KKGPL KVWLAAHWDKKLTK Q+++ D+  SVDSI  P V +ALR SGHLLLGVVRIYSRK KYL+ DCS A  KIKMAFRP
Sbjct:    1 MFYAHLILSKKGPLAKVWLAAHWDKKLTKAQIYEADVKSSVDSIKSPQVKMALRTSGHLLLGVVRIYSRKAKYLLTDCSDAFVKIKMAFRP 91          
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|953488201|emb|CEG48218.1| (double-strand-break repair protein rad21 [Plasmopara halstedii])

HSP 1 Score: 151.754 bits (382), Expect = 2.819e-41
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 0
Query:    1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
            MF++  +L KKGPLGK+WLAAHWDKKL K Q+F  DI  SV SIV+P VPLALRVSGHLLLGVVRIYSRKVKYL  DCS+AL KIK+AFRP
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSVQSIVNPQVPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRP 91          
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|301107822|ref|XP_002902993.1| (double-strand-break repair protein rad21 [Phytophthora infestans T30-4] >gi|262098111|gb|EEY56163.1| double-strand-break repair protein rad21 [Phytophthora infestans T30-4])

HSP 1 Score: 151.369 bits (381), Expect = 4.759e-41
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 0
Query:    1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
            MF++  +L KKGPLGK+WLAAHWDKKL K Q+F  DI  SV SI++P VPLALRVSGHLLLGVVRIYSRKVKYL  DCS+AL KIK+AFRP
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSVQSILNPQVPLALRVSGHLLLGVVRIYSRKVKYLYTDCSEALVKIKLAFRP 91          
The following BLAST results are available for this feature:
BLAST of EWM24243.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105634|gb|EWM24243.1|8.066e-64100.00mitotic cohesin [Nannochloropsis gaditana][more]
gi|224007903|ref|XP_002292911.1|3.718e-4577.17hypothetical protein THAPSDRAFT_263720, partial [T... [more]
gi|397577477|gb|EJK50596.1|1.053e-4376.34hypothetical protein THAOC_30369 [Thalassiosira oc... [more]
gi|635364966|emb|CCI46618.1|6.305e-4376.34unnamed protein product [Albugo candida] >gi|63536... [more]
gi|325183853|emb|CCA18311.1|1.525e-4275.27doublestrandbreak repair protein rad21 putative [A... [more]
gi|219115091|ref|XP_002178341.1|2.228e-4277.17mitotic cohesin [Phaeodactylum tricornutum CCAP 10... [more]
gi|695442312|ref|XP_009533423.1|7.493e-4275.82hypothetical protein PHYSODRAFT_519994 [Phytophtho... [more]
gi|196008671|ref|XP_002114201.1|1.434e-4171.43hypothetical protein TRIADDRAFT_58420 [Trichoplax ... [more]
gi|953488201|emb|CEG48218.1|2.819e-4175.82double-strand-break repair protein rad21 [Plasmopa... [more]
gi|301107822|ref|XP_002902993.1|4.759e-4174.73double-strand-break repair protein rad21 [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6474rna6474Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications