EWM24243.1, cds6458 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|585105634|gb|EWM24243.1| (mitotic cohesin [Nannochloropsis gaditana]) HSP 1 Score: 196.823 bits (499), Expect = 8.066e-64 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query: 1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPELRPV 96
MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPELRPV
Sbjct: 1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPELRPV 96
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|224007903|ref|XP_002292911.1| (hypothetical protein THAPSDRAFT_263720, partial [Thalassiosira pseudonana CCMP1335] >gi|220971773|gb|EED90107.1| hypothetical protein THAPSDRAFT_263720, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 149.443 bits (376), Expect = 3.718e-45 Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 1 MFFASSLLTKKGPLGKVWLAAHW-DKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
MF++ +L KKGPLGKVWLAAHW DKK+T+ Q+F TDI SVDSIV+PTVPLALRVSGHLLLGVVRIYSRKV+YLM DC +A+ KIKMAFRP
Sbjct: 1 MFYSQIILAKKGPLGKVWLAAHWGDKKITRPQIFSTDIATSVDSIVNPTVPLALRVSGHLLLGVVRIYSRKVRYLMHDCHEAMVKIKMAFRP 92
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|397577477|gb|EJK50596.1| (hypothetical protein THAOC_30369 [Thalassiosira oceanica]) HSP 1 Score: 151.369 bits (381), Expect = 1.053e-43 Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 0
Query: 1 MFFASSLLTKKGPLGKVWLAAHW-DKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPE 92
MF++ +L KKGPLGKVWLAAHW DKKL + Q+F TDI+ SVDSIV+PTVPLALRVSGHLLLGVVRIYSRKVKYLM DC +A+ KIKMAF+P+
Sbjct: 1 MFYSQIILAKKGPLGKVWLAAHWGDKKLGRPQIFNTDISASVDSIVNPTVPLALRVSGHLLLGVVRIYSRKVKYLMTDCHEAMVKIKMAFKPD 93
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|635364966|emb|CCI46618.1| (unnamed protein product [Albugo candida] >gi|635368785|emb|CCI43090.1| unnamed protein product [Albugo candida]) HSP 1 Score: 156.377 bits (394), Expect = 6.305e-43 Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 0
Query: 1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPEL 93
MF++ +L KKGPLGK+WLAAHWDKKL K Q+F DI SVDSIV+P VPLALRVSGHLLLGVVRIYSRKVKYL DCS+AL KIK+AFRP L
Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKHQIFTADIQSSVDSIVNPQVPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRPGL 93
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|325183853|emb|CCA18311.1| (doublestrandbreak repair protein rad21 putative [Albugo laibachii Nc14] >gi|325183958|emb|CCA18416.1| doublestrandbreak repair protein rad21 putative [Albugo laibachii Nc14]) HSP 1 Score: 155.221 bits (391), Expect = 1.525e-42 Identity = 70/93 (75.27%), Postives = 79/93 (84.95%), Query Frame = 0
Query: 1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRPEL 93
MF++ +L KKGPLGK+WLAAHWDKKL K Q+F DI SVDSIV+P VPLALRV+GHLLLGVVRIYSRKVKYL DCS+AL KIK+AFRP L
Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKHQIFTADIQSSVDSIVNPQVPLALRVTGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRPGL 93
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|219115091|ref|XP_002178341.1| (mitotic cohesin [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410076|gb|EEC50006.1| mitotic cohesin [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 155.606 bits (392), Expect = 2.228e-42 Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 0
Query: 1 MFFASSLLTKKGPLGKVWLAAHW-DKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
MF++ +L KKGPLGKVW+AAHW DKKL + Q+F TDI+ SVDSIVHP VPLALRVSGHLLLGVVRIYSRKVKYLM DC +A+ KIKMAFRP
Sbjct: 1 MFYSQIILAKKGPLGKVWMAAHWGDKKLGRPQIFATDISASVDSIVHPQVPLALRVSGHLLLGVVRIYSRKVKYLMHDCHEAMVKIKMAFRP 92
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|695442312|ref|XP_009533423.1| (hypothetical protein PHYSODRAFT_519994 [Phytophthora sojae] >gi|348670857|gb|EGZ10678.1| hypothetical protein PHYSODRAFT_519994 [Phytophthora sojae]) HSP 1 Score: 153.295 bits (386), Expect = 7.493e-42 Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 0
Query: 1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
MF++ +L KKGPLGK+WLAAHWDKKL K Q+F DI SV SIV+P VPLALRVSGHLLLGVVRIYSRKVKYL DCS+AL KIK+AFRP
Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFSADIHSSVQSIVNPQVPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRP 91
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|196008671|ref|XP_002114201.1| (hypothetical protein TRIADDRAFT_58420 [Trichoplax adhaerens] >gi|190583220|gb|EDV23291.1| hypothetical protein TRIADDRAFT_58420 [Trichoplax adhaerens]) HSP 1 Score: 141.739 bits (356), Expect = 1.434e-41 Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 0
Query: 1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
MF+A +L+KKGPL KVWLAAHWDKKLTK Q+++ D+ SVDSI P V +ALR SGHLLLGVVRIYSRK KYL+ DCS A KIKMAFRP
Sbjct: 1 MFYAHLILSKKGPLAKVWLAAHWDKKLTKAQIYEADVKSSVDSIKSPQVKMALRTSGHLLLGVVRIYSRKAKYLLTDCSDAFVKIKMAFRP 91
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|953488201|emb|CEG48218.1| (double-strand-break repair protein rad21 [Plasmopara halstedii]) HSP 1 Score: 151.754 bits (382), Expect = 2.819e-41 Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 0
Query: 1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
MF++ +L KKGPLGK+WLAAHWDKKL K Q+F DI SV SIV+P VPLALRVSGHLLLGVVRIYSRKVKYL DCS+AL KIK+AFRP
Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSVQSIVNPQVPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRP 91
BLAST of EWM24243.1 vs. NCBI_GenBank
Match: gi|301107822|ref|XP_002902993.1| (double-strand-break repair protein rad21 [Phytophthora infestans T30-4] >gi|262098111|gb|EEY56163.1| double-strand-break repair protein rad21 [Phytophthora infestans T30-4]) HSP 1 Score: 151.369 bits (381), Expect = 4.759e-41 Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 0
Query: 1 MFFASSLLTKKGPLGKVWLAAHWDKKLTKMQVFQTDITKSVDSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKMAFRP 91
MF++ +L KKGPLGK+WLAAHWDKKL K Q+F DI SV SI++P VPLALRVSGHLLLGVVRIYSRKVKYL DCS+AL KIK+AFRP
Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSVQSILNPQVPLALRVSGHLLLGVVRIYSRKVKYLYTDCSEALVKIKLAFRP 91 The following BLAST results are available for this feature:
BLAST of EWM24243.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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