EWM24289.1, cds6434 (CDS) Nannochloropsis gaditana

Overview
NameEWM24289.1
Unique Namecds6434
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:534440..534484 -
Alignment locationCM002468.1:533984..534178 -
Alignment locationCM002468.1:533754..533822 -
Alignment locationCM002468.1:533471..533560 -
Alignment locationCM002468.1:532868..533164 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24289.1
Productprotein disulfide-isomerase
Orig transcript idgnl|cribi|Naga_100020g27.5422.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:534440..534484 -
CM002468.1supercontigCM002468.1:533984..534178 -
CM002468.1supercontigCM002468.1:533754..533822 -
CM002468.1supercontigCM002468.1:533471..533560 -
CM002468.1supercontigCM002468.1:532868..533164 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005623cell
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR017937Thioredoxin_CS
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM24289.1 vs. NCBI_GenBank
Match: gi|585105680|gb|EWM24289.1| (protein disulfide-isomerase [Nannochloropsis gaditana])

HSP 1 Score: 481.871 bits (1239), Expect = 2.616e-172
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MGSMMAALCTVSTFVATLFCVFLIASATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEVTEGLQALCYQIVREAQAVYKGERPIDTPFIVMMTVIFLFFGVIVLSFAALFTGPVVPNGKRDKQSTKKNN 231
            MGSMMAALCTVSTFVATLFCVFLIASATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEVTEGLQALCYQIVREAQAVYKGERPIDTPFIVMMTVIFLFFGVIVLSFAALFTGPVVPNGKRDKQSTKKNN
Sbjct:    1 MGSMMAALCTVSTFVATLFCVFLIASATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEVTEGLQALCYQIVREAQAVYKGERPIDTPFIVMMTVIFLFFGVIVLSFAALFTGPVVPNGKRDKQSTKKNN 231          
BLAST of EWM24289.1 vs. NCBI_GenBank
Match: gi|698789486|ref|XP_009827775.1| (protein disulfide-isomerase domain [Aphanomyces astaci] >gi|574117622|gb|ETV83104.1| protein disulfide-isomerase domain [Aphanomyces astaci])

HSP 1 Score: 171.785 bits (434), Expect = 2.972e-50
Identity = 79/136 (58.09%), Postives = 98/136 (72.06%), Query Frame = 0
Query:   26 SATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEV 161
            +A+ VV+LT  +FEHLTQASTGATTGDWLV F APWCGHCK L P +E+VA ELKG VNVAKVD  AN+ L  RF+I+ FP + FFH+GSMY+Y   R  E L+ FA GG+ +  + PVP  P+ +  I  +LD V
Sbjct:   18 AASNVVDLTSDSFEHLTQASTGATTGDWLVEFYAPWCGHCKSLAPVFEQVADELKGTVNVAKVDVTANAPLGQRFAIKGFPTILFFHEGSMYEYESARTKEALVAFAEGGFASAANTPVPGVPSVVDTITKELDVV 153          
BLAST of EWM24289.1 vs. NCBI_GenBank
Match: gi|669165862|ref|XP_008618493.1| (hypothetical protein SDRG_14162 [Saprolegnia diclina VS20] >gi|530729826|gb|EQC28068.1| hypothetical protein SDRG_14162 [Saprolegnia diclina VS20])

HSP 1 Score: 167.162 bits (422), Expect = 1.594e-48
Identity = 80/155 (51.61%), Postives = 101/155 (65.16%), Query Frame = 0
Query:   15 VATLFCVFLIASATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDY-RGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEVTEGLQAL 168
            VA L  +  +A A+ VVELT  +FEHLTQA+TGATTGDWLV F APWCGHCKHL P +E+VA EL G VNVAKVD  AN+ L  RF I+ FP +  FH+GSMY+Y    R  E L+ +A GG+ +    PVP  PT + +       + + L+ L
Sbjct:    7 VAVLSLLVALAHASHVVELTSDSFEHLTQAATGATTGDWLVEFYAPWCGHCKHLAPVYEDVANELHGTVNVAKVDVTANAALGQRFDIKGFPTILLFHKGSMYEYGSNERTKEALVAYASGGFASGLKKPVPTVPTLMDEATKHAHIIVKDLKTL 161          
BLAST of EWM24289.1 vs. NCBI_GenBank
Match: gi|813176515|ref|XP_012205047.1| (hypothetical protein SPRG_09913 [Saprolegnia parasitica CBS 223.65] >gi|641530134|gb|KDO24276.1| hypothetical protein SPRG_09913 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 163.696 bits (413), Expect = 3.618e-47
Identity = 76/149 (51.01%), Postives = 98/149 (65.77%), Query Frame = 0
Query:   21 VFLIASATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDY-RGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEVTEGLQAL 168
            V L  +++ VV+LT  +FEHLTQA+TGATTGDWLV F APWCGHCKHL P +E+VA EL G VNVAKVD  AN+ L  RF I+ FP + FFH+GSMY+Y    R  + L+ +A GG+ +    PVP  PT + +       +   L+ L
Sbjct:   14 VALAHASSHVVDLTSDSFEHLTQAATGATTGDWLVEFYAPWCGHCKHLAPVYEDVANELHGSVNVAKVDVTANAALGQRFDIKGFPTILFFHKGSMYEYGSNERTKDALVAYASGGFASGVKKPVPTVPTLMDEATKHAHIIVHDLKTL 162          
BLAST of EWM24289.1 vs. NCBI_GenBank
Match: gi|673015974|ref|XP_008861948.1| (protein disulfide-isomerase domain [Aphanomyces invadans] >gi|574483546|gb|ETW10537.1| protein disulfide-isomerase domain [Aphanomyces invadans])

HSP 1 Score: 163.31 bits (412), Expect = 5.373e-47
Identity = 74/134 (55.22%), Postives = 93/134 (69.40%), Query Frame = 0
Query:   28 TEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEV 161
            + V++LT  +FEHLTQASTGATTGDWLV F APWCGHCK L P +E+VA EL G VNVAKVD   N+ L  RF I+ FP + FFH+GSMY Y   R  E L++FA+ GY ++    VP  P+ +  +K +LD V
Sbjct:   20 SNVIDLTVDSFEHLTQASTGATTGDWLVEFYAPWCGHCKSLAPVFEQVADELHGSVNVAKVDVTENAALGKRFDIKGFPTILFFHKGSMYAYEAARTKEALVKFAQSGYASIAKVTVPGVPSAVDAVKKELDAV 153          
BLAST of EWM24289.1 vs. NCBI_GenBank
Match: gi|470399908|ref|XP_004335451.1| (thioredoxin domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440792210|gb|ELR13438.1| thioredoxin domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 160.614 bits (405), Expect = 9.793e-46
Identity = 74/141 (52.48%), Postives = 98/141 (69.50%), Query Frame = 0
Query:   25 ASATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEVTEGL 165
             ++++V+EL D NFEHLTQA++G+TTG+WLV F APWCGHCK L PTWE +A ELKG V VAKVDA  N  +  RF I+ FP + FF QG  Y Y G R+ EQL  FA  G++++ SAP+P P + + +I   L+E  + L
Sbjct:   27 GASSDVIELNDDNFEHLTQATSGSTTGNWLVEFYAPWCGHCKSLAPTWEALATELKGTVPVAKVDATLNPLVKKRFGIKGFPTIIFFKQGKQYVYTGGRSLEQLKAFALSGHESVASAPIPAPVSAMDQIIEMLNEDVQHL 167          
BLAST of EWM24289.1 vs. NCBI_GenBank
Match: gi|325179658|emb|CCA14056.1| (protein disulfideisomerase putative [Albugo laibachii Nc14])

HSP 1 Score: 159.844 bits (403), Expect = 1.424e-45
Identity = 77/148 (52.03%), Postives = 95/148 (64.19%), Query Frame = 0
Query:   18 LFCVFL-----IASATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDE 160
            LFC+ L         + +V L + NFE LTQASTGATTGDWL+ F AP C HCK L+P +EEVA +LKG +NVAKVDAIAN  L  RF I  +P + FF QG MY Y+  R+ E L +F + GYK +    VP  PT L KI LQ+ +
Sbjct:    9 LFCILLNFVSIDGKQSTIVTLDNDNFEKLTQASTGATTGDWLIEFYAPCCDHCKRLLPIFEEVATKLKGTINVAKVDAIANRELGVRFGISGYPTIIFFRQGVMYKYKQERSKEALSQFTKEGYKQVEGVKVPSSPTMLNKI-LQISQ 155          
BLAST of EWM24289.1 vs. NCBI_GenBank
Match: gi|156085493|ref|XP_001610156.1| (Thioredoxin family protein [Babesia bovis] >gi|154797408|gb|EDO06588.1| Thioredoxin family protein [Babesia bovis] >gi|527100409|dbj|BAN65262.1| Thioredoxin family protein [Babesia bovis])

HSP 1 Score: 160.229 bits (404), Expect = 1.700e-45
Identity = 97/236 (41.10%), Postives = 129/236 (54.66%), Query Frame = 0
Query:    3 SMMAALCTVSTFVAT-LFCVFLIASATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYR-GPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEVTEGLQALCYQIVREAQAVYKGERPIDTPFIVMMTV-IFLFFGVI----VLSFAALFTGPVVPNGKRDKQSTKKNN 231
            S++ A+CTV    A  +  V + A A+ VV+LTDSNFE LTQASTGATTG W V F APWC HC+ + P WE +A ELKG VNVA +DA    N+A RF+I+ +P L    +G MY Y+ G R+ E+L  FA   YK   S PVP P TF   + + +D    G Q        EAQ +Y      D  F     +  F F G I    V++  AL  G    +G +  ++ +K +
Sbjct:    6 SIVVAVCTVMGVQADQVTNVKVNAEASAVVQLTDSNFEKLTQASTGATTGPWFVKFYAPWCSHCRQMAPAWERLAKELKGVVNVADLDATRAPNVAKRFAIKGYPTLLLIDKGRMYQYKNGDRSTEKLAAFATNDYKKALSNPVPAPLTF---VGVTIDFFVTGTQ--------EAQRIY------DVAFRGFFVISTFAFLGGILMGMVIAVIALSKGNSTAHGNKSPRNARKQD 224          
BLAST of EWM24289.1 vs. NCBI_GenBank
Match: gi|401413078|ref|XP_003885986.1| (putative thioredoxin [Neospora caninum Liverpool] >gi|325120406|emb|CBZ55960.1| putative thioredoxin [Neospora caninum Liverpool] >gi|820694967|tpe|CEL70706.1| TPA: thioredoxin, putative [Neospora caninum Liverpool])

HSP 1 Score: 160.999 bits (406), Expect = 2.081e-45
Identity = 79/169 (46.75%), Postives = 105/169 (62.13%), Query Frame = 0
Query:    4 MMAALCTVSTFVATLFCVFLIASATEVV-ELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIKLQLDEVTEGLQALCYQ 171
            + A +C VS    ++F     A+    V ELTD++FEH TQASTGATTG W V F APWCGHCK +   WE++A EL G++NVAK+DA +NS  A RF I+ FP L +   G MY+YRG R+ E+L  FA GG+K++    +P P T L  +K +L      LQ + Y 
Sbjct:   36 LAAGVCVVSLIALSVFAAAAPATPPPAVKELTDASFEHDTQASTGATTGHWFVKFYAPWCGHCKAMANAWEDLAKELSGKINVAKLDATSNSITAKRFKIQGFPTLYYLANGKMYEYRGERSVEKLKAFAEGGWKSVEGETIPSPLTTLDVLKDELISAFLQLQGIVYH 204          
BLAST of EWM24289.1 vs. NCBI_GenBank
Match: gi|873230881|emb|CEM09881.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 159.458 bits (402), Expect = 2.788e-45
Identity = 76/151 (50.33%), Postives = 97/151 (64.24%), Query Frame = 0
Query:    9 CTVSTFVATLFCVFLIA----SATEVVELTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLAKIK 155
            CT ++F+  L    +      + + V  LTD+NFEH TQAS+GATTGDW + F A WCGHC+ L PTWEE+A  LKG V VAKVD  AN++  SRF+I+ FP L    QG MY+Y+G R+   L  FA GGYK  P  PVP P + L ++K
Sbjct:    5 CTAASFLLLLGTADVATGDSTAKSAVRVLTDANFEHDTQASSGATTGDWFIEFYANWCGHCQRLQPTWEELAANLKGRVVVAKVDCDANTSTRSRFNIQGFPTLLLLRQGRMYEYKGARDLAALEAFATGGYKKTPGKPVPPPESLLDQLK 155          
The following BLAST results are available for this feature:
BLAST of EWM24289.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105680|gb|EWM24289.1|2.616e-172100.00protein disulfide-isomerase [Nannochloropsis gadit... [more]
gi|698789486|ref|XP_009827775.1|2.972e-5058.09protein disulfide-isomerase domain [Aphanomyces as... [more]
gi|669165862|ref|XP_008618493.1|1.594e-4851.61hypothetical protein SDRG_14162 [Saprolegnia dicli... [more]
gi|813176515|ref|XP_012205047.1|3.618e-4751.01hypothetical protein SPRG_09913 [Saprolegnia paras... [more]
gi|673015974|ref|XP_008861948.1|5.373e-4755.22protein disulfide-isomerase domain [Aphanomyces in... [more]
gi|470399908|ref|XP_004335451.1|9.793e-4652.48thioredoxin domain containing protein [Acanthamoeb... [more]
gi|325179658|emb|CCA14056.1|1.424e-4552.03protein disulfideisomerase putative [Albugo laibac... [more]
gi|156085493|ref|XP_001610156.1|1.700e-4541.10Thioredoxin family protein [Babesia bovis] >gi|154... [more]
gi|401413078|ref|XP_003885986.1|2.081e-4546.75putative thioredoxin [Neospora caninum Liverpool] ... [more]
gi|873230881|emb|CEM09881.1|2.788e-4550.33unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6450rna6450Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications