EWM24235.1, cds6400 (CDS) Nannochloropsis gaditana

Overview
NameEWM24235.1
Unique Namecds6400
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:473043..473127 -
Alignment locationCM002468.1:472250..472644 -
Alignment locationCM002468.1:471481..472035 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24235.1
Producturease accessory protein ureg
Orig transcript idgnl|cribi|Naga_100020g64.5368.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:473043..473127 -
CM002468.1supercontigCM002468.1:472250..472644 -
CM002468.1supercontigCM002468.1:471481..472035 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0003924GTPase activity
GO:0016151nickel cation binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0006807nitrogen compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003495CobW/HypB/UreG_dom
IPR004400UreG
Homology
BLAST of EWM24235.1 vs. NCBI_GenBank
Match: gi|585105626|gb|EWM24235.1| (urease accessory protein ureg [Nannochloropsis gaditana])

HSP 1 Score: 704.516 bits (1817), Expect = 0.000e+0
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0
Query:    1 MSSTPHSKHVSTEGREKVSTARHPEKDNGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS 344
            MSSTPHSKHVSTEGREKVSTARHPEKDNGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS
Sbjct:    1 MSSTPHSKHVSTEGREKVSTARHPEKDNGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS 344          
BLAST of EWM24235.1 vs. NCBI_GenBank
Match: gi|585105627|gb|EWM24236.1| (urease accessory protein ureg [Nannochloropsis gaditana])

HSP 1 Score: 648.662 bits (1672), Expect = 0.000e+0
Identity = 316/317 (99.68%), Postives = 316/317 (99.68%), Query Frame = 0
Query:   28 NGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS 344
             GHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS
Sbjct:    5 QGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS 321          
BLAST of EWM24235.1 vs. NCBI_GenBank
Match: gi|953487802|emb|CEG48630.1| (urease accessory protein [Plasmopara halstedii])

HSP 1 Score: 337.421 bits (864), Expect = 1.555e-112
Identity = 166/254 (65.35%), Postives = 199/254 (78.35%), Query Frame = 0
Query:   70 HHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 322
            +H H  D   +  +     P+    ++  EHGHTHE +E  G FH RD     RD+++RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+ED EFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +  ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINKTDLA  VGADL+ MAR+A +MRGDGP V +Q+  D GVQDII H++K WK
Sbjct:   20 NHSHIDDLIQNFTRSHGRAPTLDEENHLREHGHTHEHLEHAGIFHERDTAKSDRDWVQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDSEFLVRHDALPKERIRAIETGGCPHAAIREDISANLQACEDLTEEFHPQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKTDLAPHVGADLDVMARDAKLMRGDGPTVFSQINQDKGVQDIIEHMIKTWK 273          
BLAST of EWM24235.1 vs. NCBI_GenBank
Match: gi|568036057|gb|ETM33674.1| (urease accessory protein UreG [Phytophthora parasitica])

HSP 1 Score: 331.257 bits (848), Expect = 4.899e-110
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0
Query:   89 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 322
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   47 PTTDEEKQLREHGHTHEHMEHAGVFHERDAAKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 281          
BLAST of EWM24235.1 vs. NCBI_GenBank
Match: gi|568006192|gb|ETL80462.1| (urease accessory protein UreG [Phytophthora parasitica])

HSP 1 Score: 331.257 bits (848), Expect = 4.913e-110
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0
Query:   89 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 322
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   49 PTTDEEKQLREHGHTHEHMEHAGVFHERDAAKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 283          
BLAST of EWM24235.1 vs. NCBI_GenBank
Match: gi|567976698|gb|ETL27215.1| (urease accessory protein UreG [Phytophthora parasitica] >gi|570938040|gb|ETP03297.1| urease accessory protein UreG [Phytophthora parasitica CJ01A1])

HSP 1 Score: 330.487 bits (846), Expect = 1.146e-109
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0
Query:   89 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 322
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   54 PTTDEEKQLREHGHTHEHMEHAGVFHERDAAKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 288          
BLAST of EWM24235.1 vs. NCBI_GenBank
Match: gi|570968337|gb|ETP31456.1| (urease accessory protein UreG [Phytophthora parasitica P10297])

HSP 1 Score: 330.102 bits (845), Expect = 1.385e-109
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0
Query:   89 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 322
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   49 PTPDEEKQLREHGHTHEHMEHAGVFHERDADKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 283          
BLAST of EWM24235.1 vs. NCBI_GenBank
Match: gi|970639311|gb|KUF82424.1| (Urease accessory protein UreG [Phytophthora nicotianae] >gi|970647570|gb|KUF87359.1| Integrator complex subunit 9 [Phytophthora nicotianae])

HSP 1 Score: 330.102 bits (845), Expect = 1.453e-109
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0
Query:   89 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 322
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   52 PTPDEEKQLREHGHTHEHMEHAGVFHERDAAKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 286          
BLAST of EWM24235.1 vs. NCBI_GenBank
Match: gi|566010543|gb|ETI33454.1| (urease accessory protein UreG [Phytophthora parasitica P1569])

HSP 1 Score: 330.102 bits (845), Expect = 2.953e-109
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0
Query:   89 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 322
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   71 PTTDEEKQLREHGHTHEHMEHAGVFHERDAAKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 305          
BLAST of EWM24235.1 vs. NCBI_GenBank
Match: gi|470114702|ref|XP_004293549.1| (PREDICTED: urease accessory protein G [Fragaria vesca subsp. vesca])

HSP 1 Score: 327.405 bits (838), Expect = 1.112e-108
Identity = 158/229 (69.00%), Postives = 190/229 (82.97%), Query Frame = 0
Query:  102 HTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIR 329
            H+HEP+ SPG F  R  PL+ RD+ ERAFT+G+GGPVG+GKTAL+ ALCK LR  YS+AA+TNDIFT+EDGEFL++H AL  +RI A+ETGGCPHAAIREDIS NL   E ++  + ADI+L ESGGDNLAANFSRELADYIIY+IDV+GGDK+PRKGGPGITQ+DLLVINKTDLA++VGADL  M R+A  MR  GP V AQVK   GV++I+ HIL+AW+LATG+ R
Sbjct:   49 HSHEPIYSPGFFSRRAPPLQTRDFKERAFTIGIGGPVGTGKTALMLALCKLLRDKYSLAAVTNDIFTKEDGEFLVKHGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAEAVGADLAVMERDALRMRDGGPFVFAQVKHGKGVEEIVHHILQAWELATGMKR 277          
The following BLAST results are available for this feature:
BLAST of EWM24235.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105626|gb|EWM24235.1|0.000e+0100.00urease accessory protein ureg [Nannochloropsis gad... [more]
gi|585105627|gb|EWM24236.1|0.000e+099.68urease accessory protein ureg [Nannochloropsis gad... [more]
gi|953487802|emb|CEG48630.1|1.555e-11265.35urease accessory protein [Plasmopara halstedii][more]
gi|568036057|gb|ETM33674.1|4.899e-11068.09urease accessory protein UreG [Phytophthora parasi... [more]
gi|568006192|gb|ETL80462.1|4.913e-11068.09urease accessory protein UreG [Phytophthora parasi... [more]
gi|567976698|gb|ETL27215.1|1.146e-10968.09urease accessory protein UreG [Phytophthora parasi... [more]
gi|570968337|gb|ETP31456.1|1.385e-10968.09urease accessory protein UreG [Phytophthora parasi... [more]
gi|970639311|gb|KUF82424.1|1.453e-10968.09Urease accessory protein UreG [Phytophthora nicoti... [more]
gi|566010543|gb|ETI33454.1|2.953e-10968.09urease accessory protein UreG [Phytophthora parasi... [more]
gi|470114702|ref|XP_004293549.1|1.112e-10869.00PREDICTED: urease accessory protein G [Fragaria ve... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6416rna6416Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications