EWM30034.1, cds639 (CDS) Nannochloropsis gaditana

Overview
NameEWM30034.1
Unique Namecds639
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:63953..64263 -
Alignment locationCM002456.1:63677..63816 -
Alignment locationCM002456.1:63491..63538 -
Alignment locationCM002456.1:63274..63385 -
Alignment locationCM002456.1:63210..63218 -
Alignment locationCM002456.1:62863..62920 -

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Properties
Property NameValue
Protein idEWM30034.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100718g1.10598.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:63953..64263 -
CM002456.1supercontigCM002456.1:63677..63816 -
CM002456.1supercontigCM002456.1:63491..63538 -
CM002456.1supercontigCM002456.1:63274..63385 -
CM002456.1supercontigCM002456.1:63210..63218 -
CM002456.1supercontigCM002456.1:62863..62920 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM30034.1 vs. NCBI_GenBank
Match: gi|585112661|gb|EWM30034.1| (hypothetical protein Naga_100718g1 [Nannochloropsis gaditana])

HSP 1 Score: 440.269 bits (1131), Expect = 5.645e-156
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0 
Query:    1 MLVTDSTSGEASWPPQRRNTVSPSISPRKHITLTSLFVFGLLSCLVLLPVEAIKRASTPAGNKASRPSPSPPNPKTRPTDDEKSPSPHPPLRQAKRRDTCENHSHGEALTIHLLLSDGQDRVLSLPPATTPQTLRHHLLAQGLVASHQADGLRVRRQKPGGRPFTKGLATLTGLQEGDTILLPPSSSPSSPPSSSSSSFVPYPDCIRLSARTPLSWPGSLSIPPP 225
            MLVTDSTSGEASWPPQRRNTVSPSISPRKHITLTSLFVFGLLSCLVLLPVEAIKRASTPAGNKASRPSPSPPNPKTRPTDDEKSPSPHPPLRQAKRRDTCENHSHGEALTIHLLLSDGQDRVLSLPPATTPQTLRHHLLAQGLVASHQADGLRVRRQKPGGRPFTKGLATLTGLQEGDTILLPPSSSPSSPPSSSSSSFVPYPDCIRLSARTPLSWPGSLSIPPP
Sbjct:    1 MLVTDSTSGEASWPPQRRNTVSPSISPRKHITLTSLFVFGLLSCLVLLPVEAIKRASTPAGNKASRPSPSPPNPKTRPTDDEKSPSPHPPLRQAKRRDTCENHSHGEALTIHLLLSDGQDRVLSLPPATTPQTLRHHLLAQGLVASHQADGLRVRRQKPGGRPFTKGLATLTGLQEGDTILLPPSSSPSSPPSSSSSSFVPYPDCIRLSARTPLSWPGSLSIPPP 225
[Close]
BLAST of EWM30034.1 vs. NCBI_GenBank
Match: gi|553179128|ref|XP_005852653.1| (hypothetical protein NGA_0717500 [Nannochloropsis gaditana CCMP526] >gi|422295881|gb|EKU23180.1| hypothetical protein NGA_0717500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 132.494 bits (332), Expect = 7.041e-35
Identity = 105/164 (64.02%), Postives = 109/164 (66.46%), Query Frame = 0 
Query:  104 SHGEALTIHLLLSDGQDRVLSLPPATTPQTLRHHLLAQGLVASHQADGLRVR---------------------------RQKPGGRPFTKGLATLTGLQEGDTILLPPSSSPSSPPSSSSSSFVPYPDCI---------------RLSARTPLSWPGSLSIPPP 225
            SHGEALTIHLLLSDGQDRVLSLPPATTPQTLRHHLLAQGLVASHQADG  +                             ++ GG      LATLTGLQEGDTILLPPSSSPSSPPSSSSSSFVPYP+                 RLSARTPLSWPGSLSIPPP
Sbjct:   45 SHGEALTIHLLLSDGQDRVLSLPPATTPQTLRHHLLAQGLVASHQADGKPIALLLLDLSLPSLGLRTPGEKTKTWRAALHERCGGMGGKTRLATLTGLQEGDTILLPPSSSPSSPPSSSSSSFVPYPEICSPLPAILIILSLSLSRLSARTPLSWPGSLSIPPP 208
The following BLAST results are available for this feature:
BLAST of EWM30034.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112661|gb|EWM30034.1|5.645e-156100.00hypothetical protein Naga_100718g1 [Nannochloropsi... [more]
gi|553179128|ref|XP_005852653.1|7.041e-3564.02hypothetical protein NGA_0717500 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna639rna639Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications