EWM24302.1, cds6360 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|585105694|gb|EWM24302.1| (las1-like family expressed [Nannochloropsis gaditana]) HSP 1 Score: 1030.78 bits (2664), Expect = 0.000e+0 Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 0 Query: 1 MFGQPPPYRMNTTPRVLPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDVHPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQGQDLEQAAAAAHGLLLAYRSVALAVQEECPNALDRACRLQREDAGSKELGSERGGIRTASDTHLAEALQALLCSVTPSFLTTFLLPALVCIPHGRVGQDDIVRPSSWGECFLLPDSELEDRASGVTAKCSSTEGCLPVSAELKTLQAIKHRRLYIPLLVRLQRRFPCFARSLFFRLVSPMGGGLKWRGAGGKGPGTESEGARATEAAHFSSSLPAPTFGMWVSYLQSRDWHSHFPYGRAEATFTLRRASGIRFNLRDKASASWTTAESDFMLSRASGGVLRRGLGLGVGSKGRKGREGREGGEGGEGGRGGDEGWTLCQEWIPSPLGGPVMRRGEDSVWTASV 509 MFGQPPPYRMNTTPRVLPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDVHPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQGQDLEQAAAAAHGLLLAYRSVALAVQEECPNALDRACRLQREDAGSKELGSERGGIRTASDTHLAEALQALLCSVTPSFLTTFLLPALVCIPHGRVGQDDIVRPSSWGECFLLPDSELEDRASGVTAKCSSTEGCLPVSAELKTLQAIKHRRLYIPLLVRLQRRFPCFARSLFFRLVSPMGGGLKWRGAGGKGPGTESEGARATEAAHFSSSLPAPTFGMWVSYLQSRDWHSHFPYGRAEATFTLRRASGIRFNLRDKASASWTTAESDFMLSRASGGVLRRGLGLGVGSKGRKGREGREGGEGGEGGRGGDEGWTLCQEWIPSPLGGPVMRRGEDSVWTASV Sbjct: 1 MFGQPPPYRMNTTPRVLPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDVHPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQGQDLEQAAAAAHGLLLAYRSVALAVQEECPNALDRACRLQREDAGSKELGSERGGIRTASDTHLAEALQALLCSVTPSFLTTFLLPALVCIPHGRVGQDDIVRPSSWGECFLLPDSELEDRASGVTAKCSSTEGCLPVSAELKTLQAIKHRRLYIPLLVRLQRRFPCFARSLFFRLVSPMGGGLKWRGAGGKGPGTESEGARATEAAHFSSSLPAPTFGMWVSYLQSRDWHSHFPYGRAEATFTLRRASGIRFNLRDKASASWTTAESDFMLSRASGGVLRRGLGLGVGSKGRKGREGREGGEGGEGGRGGDEGWTLCQEWIPSPLGGPVMRRGEDSVWTASV 509
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|301118925|ref|XP_002907190.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262105702|gb|EEY63754.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 144.821 bits (364), Expect = 3.268e-34 Identity = 76/155 (49.03%), Postives = 98/155 (63.23%), Query Frame = 0 Query: 17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166 +PW DW+EW E LFS D+ + + V RV +WR+R +LPVAV+ATA ++E+ L + H S RS EL LY+ V+VR +NGLV+G Q YA V +A R+GIP W+VDLRHE++H LPSL LR AQHLL WL YW Q Sbjct: 8 VPWLDWSEWQEVHVGLFSTDLFVQQRAVSRVASWRSRVQLPVAVNATAQLVELLLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAHRIGIPLWVVDLRHESSHNQLPSLPVLRFAAQHLLAWLRANYWGAQ 162
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|1183331264|gb|ORX61000.1| (Las1-domain-containing protein [Piromyces finnis]) HSP 1 Score: 141.739 bits (356), Expect = 4.418e-34 Identity = 74/244 (30.33%), Postives = 128/244 (52.46%), Query Frame = 0 Query: 14 PRVLPWQDWAEWTETSNLLFS----IDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLD-------VHPNSTNSVRSP---TELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQGQDLEQAAAAAHGLLLAYRSVALAVQEECPNALDRACRLQREDAGSKELGSERGGIRTASDTH--LAEALQALLCSV 241 PR++PW EW + + L+S D + +G+ R+KAW++RG++P A+++T+ +E+ + D +PN +P ELR LY+M +R +NG+++ Q YA + ++A +LG+PQW VDLRHE TH LPSL LR G + LDWL+ YW KQ + L V+E+ + + + +E+ +E+ ++ I+ +D + E+ + +L + Sbjct: 6 PRIVPWTSIQEWEQVYHNLYSGYWSNDYKTIEKGIKRIKAWKSRGKVPQAIESTSTFMEIYVRDCISTNLTYYPNDDLKYFTPISENELRLLYTMTFIRFVNGIIDPLQKGAYAVSISSLAEQLGLPQWFVDLRHEGTHDQLPSLKVLRNGCKQALDWLNNFYWMKQKNFV--------------NDTTLYVKEKLNKYIIKRKQYLKENHSEEEMNNQADCIKLINDVIDGVGESFRTILIPI 235
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|970618732|gb|KUF66780.1| (Ribosomal biogenesis protein LAS1L [Phytophthora nicotianae] >gi|970649270|gb|KUF88585.1| Ribosomal biogenesis protein LAS1L [Phytophthora nicotianae] >gi|970662104|gb|KUF99518.1| Bzip transcription factor [Phytophthora nicotianae]) HSP 1 Score: 144.436 bits (363), Expect = 7.063e-34 Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0 Query: 17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166 LPW DWAEW E LFS D + + V RV +WR+R +LPVA++ATA ++E+ L + H S RS EL LY+ V+VR +NGLV+G Q YA V +A R+GIP W+VDLRHE++H LPSL LR AQHLL WL YW Q Sbjct: 8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|675175641|ref|XP_008896705.1| (hypothetical protein PPTG_05009 [Phytophthora parasitica INRA-310] >gi|568102444|gb|ETN17115.1| hypothetical protein PPTG_05009 [Phytophthora parasitica INRA-310]) HSP 1 Score: 144.436 bits (363), Expect = 7.344e-34 Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0 Query: 17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166 LPW DWAEW E LFS D + + V RV +WR+R +LPVA++ATA ++E+ L + H S RS EL LY+ V+VR +NGLV+G Q YA V +A R+GIP W+VDLRHE++H LPSL LR AQHLL WL YW Q Sbjct: 8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|570969579|gb|ETP32698.1| (hypothetical protein F442_18672 [Phytophthora parasitica P10297]) HSP 1 Score: 144.436 bits (363), Expect = 7.417e-34 Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0 Query: 17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166 LPW DWAEW E LFS D + + V RV +WR+R +LPVA++ATA ++E+ L + H S RS EL LY+ V+VR +NGLV+G Q YA V +A R+GIP W+VDLRHE++H LPSL LR AQHLL WL YW Q Sbjct: 8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|570315523|gb|ETO63471.1| (hypothetical protein F444_18845 [Phytophthora parasitica P1976]) HSP 1 Score: 144.436 bits (363), Expect = 7.563e-34 Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0 Query: 17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166 LPW DWAEW E LFS D + + V RV +WR+R +LPVA++ATA ++E+ L + H S RS EL LY+ V+VR +NGLV+G Q YA V +A R+GIP W+VDLRHE++H LPSL LR AQHLL WL YW Q Sbjct: 8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|567949288|gb|ETK75020.1| (hypothetical protein L915_18318 [Phytophthora parasitica] >gi|567977949|gb|ETL28443.1| hypothetical protein L916_18225 [Phytophthora parasitica] >gi|570939316|gb|ETP04573.1| hypothetical protein F441_18699 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 144.436 bits (363), Expect = 7.788e-34 Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0 Query: 17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166 LPW DWAEW E LFS D + + V RV +WR+R +LPVA++ATA ++E+ L + H S RS EL LY+ V+VR +NGLV+G Q YA V +A R+GIP W+VDLRHE++H LPSL LR AQHLL WL YW Q Sbjct: 8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|566011762|gb|ETI34673.1| (hypothetical protein F443_18856 [Phytophthora parasitica P1569]) HSP 1 Score: 144.436 bits (363), Expect = 8.178e-34 Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0 Query: 17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166 LPW DWAEW E LFS D + + V RV +WR+R +LPVA++ATA ++E+ L + H S RS EL LY+ V+VR +NGLV+G Q YA V +A R+GIP W+VDLRHE++H LPSL LR AQHLL WL YW Q Sbjct: 8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|953496491|emb|CEG42091.1| (Nuclear protein involved in cell morphogenesis and cell surface growth [Plasmopara halstedii]) HSP 1 Score: 144.05 bits (362), Expect = 9.713e-34 Identity = 73/162 (45.06%), Postives = 98/162 (60.49%), Query Frame = 0 Query: 10 MNTTPRVLPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166 M+ +PW DW EW + LFS D + + V RV AWR+R +LPVA++AT+ ++E+ L + H S RS +EL LY+ ++VR +NGLV+ Q YA V +A R+GIP W+VDLRHE+TH LPSL LR A+HLL WL YW Q Sbjct: 1 MSCRRNAVPWVDWVEWQDVHESLFSTDPFLQQRAVSRVAAWRSRTQLPVAINATSQLVELQLHESMAQHHHHAVGVSSRSHSELSLLYANIIVRCVNGLVDASQKGEYAHAVSTLAQRIGIPLWIVDLRHESTHNQLPSLPVLRFAARHLLAWLRANYWNAQ 162 The following BLAST results are available for this feature:
BLAST of EWM24302.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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