EWM24302.1, cds6360 (CDS) Nannochloropsis gaditana

Overview
NameEWM24302.1
Unique Namecds6360
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:376536..378065 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24302.1
Productlas1-like family expressed
Orig transcript idgnl|cribi|Naga_100047g17.6065.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:376536..378065 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR007174Las1
Homology
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|585105694|gb|EWM24302.1| (las1-like family expressed [Nannochloropsis gaditana])

HSP 1 Score: 1030.78 bits (2664), Expect = 0.000e+0
Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 0
Query:    1 MFGQPPPYRMNTTPRVLPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDVHPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQGQDLEQAAAAAHGLLLAYRSVALAVQEECPNALDRACRLQREDAGSKELGSERGGIRTASDTHLAEALQALLCSVTPSFLTTFLLPALVCIPHGRVGQDDIVRPSSWGECFLLPDSELEDRASGVTAKCSSTEGCLPVSAELKTLQAIKHRRLYIPLLVRLQRRFPCFARSLFFRLVSPMGGGLKWRGAGGKGPGTESEGARATEAAHFSSSLPAPTFGMWVSYLQSRDWHSHFPYGRAEATFTLRRASGIRFNLRDKASASWTTAESDFMLSRASGGVLRRGLGLGVGSKGRKGREGREGGEGGEGGRGGDEGWTLCQEWIPSPLGGPVMRRGEDSVWTASV 509
            MFGQPPPYRMNTTPRVLPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDVHPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQGQDLEQAAAAAHGLLLAYRSVALAVQEECPNALDRACRLQREDAGSKELGSERGGIRTASDTHLAEALQALLCSVTPSFLTTFLLPALVCIPHGRVGQDDIVRPSSWGECFLLPDSELEDRASGVTAKCSSTEGCLPVSAELKTLQAIKHRRLYIPLLVRLQRRFPCFARSLFFRLVSPMGGGLKWRGAGGKGPGTESEGARATEAAHFSSSLPAPTFGMWVSYLQSRDWHSHFPYGRAEATFTLRRASGIRFNLRDKASASWTTAESDFMLSRASGGVLRRGLGLGVGSKGRKGREGREGGEGGEGGRGGDEGWTLCQEWIPSPLGGPVMRRGEDSVWTASV
Sbjct:    1 MFGQPPPYRMNTTPRVLPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDVHPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQGQDLEQAAAAAHGLLLAYRSVALAVQEECPNALDRACRLQREDAGSKELGSERGGIRTASDTHLAEALQALLCSVTPSFLTTFLLPALVCIPHGRVGQDDIVRPSSWGECFLLPDSELEDRASGVTAKCSSTEGCLPVSAELKTLQAIKHRRLYIPLLVRLQRRFPCFARSLFFRLVSPMGGGLKWRGAGGKGPGTESEGARATEAAHFSSSLPAPTFGMWVSYLQSRDWHSHFPYGRAEATFTLRRASGIRFNLRDKASASWTTAESDFMLSRASGGVLRRGLGLGVGSKGRKGREGREGGEGGEGGRGGDEGWTLCQEWIPSPLGGPVMRRGEDSVWTASV 509          
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|301118925|ref|XP_002907190.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262105702|gb|EEY63754.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 144.821 bits (364), Expect = 3.268e-34
Identity = 76/155 (49.03%), Postives = 98/155 (63.23%), Query Frame = 0
Query:   17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166
            +PW DW+EW E    LFS D+  + + V RV +WR+R +LPVAV+ATA ++E+ L +      H     S RS  EL  LY+ V+VR +NGLV+G Q   YA  V  +A R+GIP W+VDLRHE++H  LPSL  LR  AQHLL WL   YW  Q
Sbjct:    8 VPWLDWSEWQEVHVGLFSTDLFVQQRAVSRVASWRSRVQLPVAVNATAQLVELLLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAHRIGIPLWVVDLRHESSHNQLPSLPVLRFAAQHLLAWLRANYWGAQ 162          
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|1183331264|gb|ORX61000.1| (Las1-domain-containing protein [Piromyces finnis])

HSP 1 Score: 141.739 bits (356), Expect = 4.418e-34
Identity = 74/244 (30.33%), Postives = 128/244 (52.46%), Query Frame = 0
Query:   14 PRVLPWQDWAEWTETSNLLFS----IDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLD-------VHPNSTNSVRSP---TELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQGQDLEQAAAAAHGLLLAYRSVALAVQEECPNALDRACRLQREDAGSKELGSERGGIRTASDTH--LAEALQALLCSV 241
            PR++PW    EW +  + L+S     D +   +G+ R+KAW++RG++P A+++T+  +E+ + D        +PN      +P    ELR LY+M  +R +NG+++  Q   YA  + ++A +LG+PQW VDLRHE TH  LPSL  LR G +  LDWL+  YW KQ   +                  L V+E+    + +  +  +E+   +E+ ++   I+  +D    + E+ + +L  +
Sbjct:    6 PRIVPWTSIQEWEQVYHNLYSGYWSNDYKTIEKGIKRIKAWKSRGKVPQAIESTSTFMEIYVRDCISTNLTYYPNDDLKYFTPISENELRLLYTMTFIRFVNGIIDPLQKGAYAVSISSLAEQLGLPQWFVDLRHEGTHDQLPSLKVLRNGCKQALDWLNNFYWMKQKNFV--------------NDTTLYVKEKLNKYIIKRKQYLKENHSEEEMNNQADCIKLINDVIDGVGESFRTILIPI 235          
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|970618732|gb|KUF66780.1| (Ribosomal biogenesis protein LAS1L [Phytophthora nicotianae] >gi|970649270|gb|KUF88585.1| Ribosomal biogenesis protein LAS1L [Phytophthora nicotianae] >gi|970662104|gb|KUF99518.1| Bzip transcription factor [Phytophthora nicotianae])

HSP 1 Score: 144.436 bits (363), Expect = 7.063e-34
Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0
Query:   17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166
            LPW DWAEW E    LFS D   + + V RV +WR+R +LPVA++ATA ++E+ L +      H     S RS  EL  LY+ V+VR +NGLV+G Q   YA  V  +A R+GIP W+VDLRHE++H  LPSL  LR  AQHLL WL   YW  Q
Sbjct:    8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162          
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|675175641|ref|XP_008896705.1| (hypothetical protein PPTG_05009 [Phytophthora parasitica INRA-310] >gi|568102444|gb|ETN17115.1| hypothetical protein PPTG_05009 [Phytophthora parasitica INRA-310])

HSP 1 Score: 144.436 bits (363), Expect = 7.344e-34
Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0
Query:   17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166
            LPW DWAEW E    LFS D   + + V RV +WR+R +LPVA++ATA ++E+ L +      H     S RS  EL  LY+ V+VR +NGLV+G Q   YA  V  +A R+GIP W+VDLRHE++H  LPSL  LR  AQHLL WL   YW  Q
Sbjct:    8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162          
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|570969579|gb|ETP32698.1| (hypothetical protein F442_18672 [Phytophthora parasitica P10297])

HSP 1 Score: 144.436 bits (363), Expect = 7.417e-34
Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0
Query:   17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166
            LPW DWAEW E    LFS D   + + V RV +WR+R +LPVA++ATA ++E+ L +      H     S RS  EL  LY+ V+VR +NGLV+G Q   YA  V  +A R+GIP W+VDLRHE++H  LPSL  LR  AQHLL WL   YW  Q
Sbjct:    8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162          
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|570315523|gb|ETO63471.1| (hypothetical protein F444_18845 [Phytophthora parasitica P1976])

HSP 1 Score: 144.436 bits (363), Expect = 7.563e-34
Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0
Query:   17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166
            LPW DWAEW E    LFS D   + + V RV +WR+R +LPVA++ATA ++E+ L +      H     S RS  EL  LY+ V+VR +NGLV+G Q   YA  V  +A R+GIP W+VDLRHE++H  LPSL  LR  AQHLL WL   YW  Q
Sbjct:    8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162          
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|567949288|gb|ETK75020.1| (hypothetical protein L915_18318 [Phytophthora parasitica] >gi|567977949|gb|ETL28443.1| hypothetical protein L916_18225 [Phytophthora parasitica] >gi|570939316|gb|ETP04573.1| hypothetical protein F441_18699 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 144.436 bits (363), Expect = 7.788e-34
Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0
Query:   17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166
            LPW DWAEW E    LFS D   + + V RV +WR+R +LPVA++ATA ++E+ L +      H     S RS  EL  LY+ V+VR +NGLV+G Q   YA  V  +A R+GIP W+VDLRHE++H  LPSL  LR  AQHLL WL   YW  Q
Sbjct:    8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162          
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|566011762|gb|ETI34673.1| (hypothetical protein F443_18856 [Phytophthora parasitica P1569])

HSP 1 Score: 144.436 bits (363), Expect = 8.178e-34
Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 0
Query:   17 LPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166
            LPW DWAEW E    LFS D   + + V RV +WR+R +LPVA++ATA ++E+ L +      H     S RS  EL  LY+ V+VR +NGLV+G Q   YA  V  +A R+GIP W+VDLRHE++H  LPSL  LR  AQHLL WL   YW  Q
Sbjct:    8 LPWLDWAEWQEVHVGLFSSDPFAQQRVVSRVASWRSRVQLPVAINATAQLVELQLHESMAQHHHHAVGVSSRSHMELSLLYASVIVRCVNGLVDGSQKGAYATAVSTLAQRIGIPLWIVDLRHESSHNQLPSLPVLRFAAQHLLAWLRSNYWGAQ 162          
BLAST of EWM24302.1 vs. NCBI_GenBank
Match: gi|953496491|emb|CEG42091.1| (Nuclear protein involved in cell morphogenesis and cell surface growth [Plasmopara halstedii])

HSP 1 Score: 144.05 bits (362), Expect = 9.713e-34
Identity = 73/162 (45.06%), Postives = 98/162 (60.49%), Query Frame = 0
Query:   10 MNTTPRVLPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDV-----HPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQ 166
            M+     +PW DW EW +    LFS D   + + V RV AWR+R +LPVA++AT+ ++E+ L +      H     S RS +EL  LY+ ++VR +NGLV+  Q   YA  V  +A R+GIP W+VDLRHE+TH  LPSL  LR  A+HLL WL   YW  Q
Sbjct:    1 MSCRRNAVPWVDWVEWQDVHESLFSTDPFLQQRAVSRVAAWRSRTQLPVAINATSQLVELQLHESMAQHHHHAVGVSSRSHSELSLLYANIIVRCVNGLVDASQKGEYAHAVSTLAQRIGIPLWIVDLRHESTHNQLPSLPVLRFAARHLLAWLRANYWNAQ 162          
The following BLAST results are available for this feature:
BLAST of EWM24302.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105694|gb|EWM24302.1|0.000e+0100.00las1-like family expressed [Nannochloropsis gadita... [more]
gi|301118925|ref|XP_002907190.1|3.268e-3449.03conserved hypothetical protein [Phytophthora infes... [more]
gi|1183331264|gb|ORX61000.1|4.418e-3430.33Las1-domain-containing protein [Piromyces finnis][more]
gi|970618732|gb|KUF66780.1|7.063e-3449.68Ribosomal biogenesis protein LAS1L [Phytophthora n... [more]
gi|675175641|ref|XP_008896705.1|7.344e-3449.68hypothetical protein PPTG_05009 [Phytophthora para... [more]
gi|570969579|gb|ETP32698.1|7.417e-3449.68hypothetical protein F442_18672 [Phytophthora para... [more]
gi|570315523|gb|ETO63471.1|7.563e-3449.68hypothetical protein F444_18845 [Phytophthora para... [more]
gi|567949288|gb|ETK75020.1|7.788e-3449.68hypothetical protein L915_18318 [Phytophthora para... [more]
gi|566011762|gb|ETI34673.1|8.178e-3449.68hypothetical protein F443_18856 [Phytophthora para... [more]
gi|953496491|emb|CEG42091.1|9.713e-3445.06Nuclear protein involved in cell morphogenesis and... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6375rna6375Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications