EWM24291.1, cds6354 (CDS) Nannochloropsis gaditana

Overview
NameEWM24291.1
Unique Namecds6354
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:363940..364142 -
Alignment locationCM002468.1:363485..363728 -
Alignment locationCM002468.1:362911..363405 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24291.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100047g11.6054.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:363940..364142 -
CM002468.1supercontigCM002468.1:363485..363728 -
CM002468.1supercontigCM002468.1:362911..363405 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24291.1 vs. NCBI_GenBank
Match: gi|585105683|gb|EWM24291.1| (hypothetical protein Naga_100047g11 [Nannochloropsis gaditana])

HSP 1 Score: 634.024 bits (1634), Expect = 0.000e+0
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
Query:    1 MPLCLQSYLLVVLLAIPSTGFLFFPARTPNHGQKVIHRMTAPANPIMHISFSSSAATASDVEALNSERFDSLVKELLAASDLPALALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHEGNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEAAEGEGEEGEEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDRAKGLEREISIVVQACG 313
            MPLCLQSYLLVVLLAIPSTGFLFFPARTPNHGQKVIHRMTAPANPIMHISFSSSAATASDVEALNSERFDSLVKELLAASDLPALALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHEGNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEAAEGEGEEGEEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDRAKGLEREISIVVQACG
Sbjct:    1 MPLCLQSYLLVVLLAIPSTGFLFFPARTPNHGQKVIHRMTAPANPIMHISFSSSAATASDVEALNSERFDSLVKELLAASDLPALALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHEGNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEAAEGEGEEGEEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDRAKGLEREISIVVQACG 313          
BLAST of EWM24291.1 vs. NCBI_GenBank
Match: gi|553179368|ref|XP_005852689.1| (hypothetical protein NGA_0310502 [Nannochloropsis gaditana CCMP526] >gi|422295843|gb|EKU23142.1| hypothetical protein NGA_0310502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0
Identity = 309/311 (99.36%), Postives = 310/311 (99.68%), Query Frame = 0
Query:    3 LCLQSYLLVVLLAIPSTGFLFFPARTPNHGQKVIHRMTAPANPIMHISFSSSAATASDVEALNSERFDSLVKELLAASDLPALALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHEGNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEAAEGEGEEGEEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDRAKGLEREISIVVQACG 313
            +CLQSYLLVVLLAIPSTGFLFFPARTPNHGQKVIHRMTAPANPIMHISFSSSAATASDVEALNSERFDSLVKELLAASDLPALALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHEGNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREE AEGEGEEGEEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDRAKGLEREISIVVQACG
Sbjct:    1 MCLQSYLLVVLLAIPSTGFLFFPARTPNHGQKVIHRMTAPANPIMHISFSSSAATASDVEALNSERFDSLVKELLAASDLPALALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHEGNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEVAEGEGEEGEEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDRAKGLEREISIVVQACG 311          
BLAST of EWM24291.1 vs. NCBI_GenBank
Match: gi|298713792|emb|CBJ27164.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 106.686 bits (265), Expect = 5.585e-23
Identity = 85/290 (29.31%), Postives = 146/290 (50.34%), Query Frame = 0
Query:   27 RTPNHGQKVIHRMTAPANPIMHISFSSSAATASDVEALNSERFDSLVKELLA--ASDLPALALSKADAFDYHFMSHLMQRLQAS-TDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILK-SGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHEGNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEAAEGEGEEGEEEWTWGPPE---VAPEDLRQALRDFLEEVQAFEEEVEAEVVDRAKGLEREISIVV 309
            R P+ G   +H M A  + +      SS  T S+  ++     D+L+ +  +  + ++ A      D  D+  ++HL  R++A      E  AL  V E +N AMQ+RLA AD  LR +L  + D+K ME ++R   R  +++ AF V+++ N Q+A++ EG + A  +L HL T +   +D++L P  +LLR LLR+  +  R+ +L ++L L        R                  PP+   V P  L+QA+ D + +V+   + ++  + D  KGL+ E++ VV
Sbjct:   62 RGPSRGLLPMH-MLAGGDAV-----QSSVGTKSEEHSV----LDALIDQFTSPKSGNVTATVEEYLDLCDHALLTHLRGRIEAEEAQSPEATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSILQDRLQLPNNDVFLER------------------PPDKDKVQPHLLQQAITDMITQVEDIGQAIDVGMTDSLKGLQVEVNTVV 323          
BLAST of EWM24291.1 vs. NCBI_GenBank
Match: gi|1189381844|gb|OSX69489.1| (hypothetical protein BU14_1464s0002 [Porphyra umbilicalis])

HSP 1 Score: 75.8702 bits (185), Expect = 9.474e-12
Identity = 77/245 (31.43%), Postives = 118/245 (48.16%), Query Frame = 0
Query:   69 FDSLVKELLAASDLPALALSKA-----DAFDYHFMSHLMQR-LQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHEGNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEA-AEGEGEEGEEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDR--AKGLERE 304
            +D+L+ E+  A+     +L+ A     +  D  F+ HL Q+ L ASTD E  A +  V  AV   M  R++ A    + ++ +GD + M  ++   L+  E+D AF ++L  N +QA+   G   A  +L  L     E RD ++PP   L+R LLR+ D  ER+ ML   L        PR++ A A+G    G          V  + L  ALR  +E+       V+A +V+R  A GLE E
Sbjct:  161 YDALLAEIQGAASAHGGSLTAAVRRAYNRVDMRFLQHLAQKNLDASTDAER-AEIEAVQAAVTQEMTVRMSAASAAFKSVVTAGDEEAMYRQLALLLQKGEMDEAFLLLLAGNLEQAK-AAGVAPAVEVLNRLQKRTAELRDNRVPPEVALVRKLLRTPDAVERKAMLTAALT-------PRKKIALADGSSSAG--------VVVDGKKLVVALRRLVEDFG----NVDASIVERVDALGLEAE 384          
BLAST of EWM24291.1 vs. NCBI_GenBank
Match: gi|298709146|emb|CBJ31091.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.4034 bits (176), Expect = 1.027e-10
Identity = 63/218 (28.90%), Postives = 108/218 (49.54%), Query Frame = 0
Query:   69 FDSLVKELLAASDLPAL---ALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHEGNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEAAEGEGEEGEEEWTWGPPEVAP----EDLRQALRDF 279
            +++L+ +LL   D  +L     +  D  D  F++ L Q+ Q +   +  AAL ++G+++N  MQ+R+A+A   L+ IL  G+ + ME  ++      E+D A  ++L  N QQA E +    A  +L+ L        D+K+ P  RL+R LLR+ D   R  +L +        A  +R +    +G E  E      P+VAP    E ++  +R+F
Sbjct:   44 YENLLGKLLNREDGESLEDAVETNYDQVDIQFLTLLNQKAQEAEGTDAAAALTRLGDSINNTMQRRMAQASERLQKILTVGNPERMEETIKAMAERGEVDDALVLLLQANLQQAEEADAG-PAVGVLKRLGAAAQAALDEKVDPEKRLVRQLLRAKDREARLNILTK--------AFRQRAKVVLADGSETSE-----APDVAPPKFIETVKGIIRNF 247          
BLAST of EWM24291.1 vs. NCBI_GenBank
Match: gi|551574851|ref|XP_005773168.1| (hypothetical protein EMIHUDRAFT_424731 [Emiliania huxleyi CCMP1516] >gi|485624738|gb|EOD20739.1| hypothetical protein EMIHUDRAFT_424731 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 71.633 bits (174), Expect = 1.973e-10
Identity = 84/301 (27.91%), Postives = 134/301 (44.52%), Query Frame = 0
Query:   12 VLLAIPSTGFLFFP---ARTPNHGQKVIHRMTAPANPIMHISFSSSAATASDVEALNSERFDS------LVKELLAASDLPALALSKADA-FDYHFMSHLMQ-RLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQARE-HEGNEAAANILQHLATLLGEERDKKLPPPTRLLRMLLRSTDEAERQGMLLEKLLLARRPA---RPRREEAAEGEGEEGEEEWTWGPPEVAPEDLRQALRDFLEEVQAFEEEVEAEVVDR 297
            +L A+ S    + P   AR+       + R  AP   I+  +  SS    +       +R DS      + + L+   +  A  ++K  A FDY FM  L + + QA+   +E   + +V  A+   M +R+ +A   L+ +L S    VME +M    R  +LD A   +L  N Q+A E  E  + A   L  L   + EE DKK+PP   L+R LLR   +  R  +L EK+   +R +       E+AA  + E  + +   G P+V    L QA ++        +EE +   V+R
Sbjct:    1 MLAALASAVAGYQPPCLARSSGLQSTTLRRAVAPVANIIDPNEPSSEVRRAGPADAPEQRIDSEETYRIMFRTLMETENKVADEVAKNYALFDYGFMQRLEEAKAQAAPGSDEAGRIEEVDVALKSEMARRMGEAAEALKSVLTSPSAVVMEGRMTGLARQGKLDDALLQLLEANLQRASEAGEAGKGAVAALSKLKQRVMEELDKKVPPDMALVRQLLRMESKPARLQLLKEKMTPKQRTSLVMATSVEDAARNDLEAADND---GEPDVDSRRLAQAFKEIKGRFGNVDEEYDTGFVER 298          
BLAST of EWM24291.1 vs. NCBI_GenBank
Match: gi|219122225|ref|XP_002181451.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407437|gb|EEC47374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 62.7734 bits (151), Expect = 2.262e-7
Identity = 64/219 (29.22%), Postives = 101/219 (46.12%), Query Frame = 0
Query:   69 FDSLVKELL----AASDLPALALSKADAFDYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYNAQQAREHEGNEAAANILQHLATLLGEERDKKLPPP-TRLLRMLLRSTDEAERQGMLLEKLLLARRPARPRREEAAEG--EGEEGEEEWTWGPPEVAPEDLRQALRDFL 280
            ++ L+K++L    A     ++  S  D FD  F+  L +R+    DD +      + EA+    Q R+A A   L+ +L  GD   ME  + +  R  ++D  F ++L  N  QAR+  G   AAN+++ L     +E+DK+      RL+R LL   D  ER+ +L E          P   E A+   +GE  +EE     P+V P D   A +  L
Sbjct:  221 YEGLLKKVLPPYRAGDTSRSVVFSYYDQFDAQFVKVLAERVNNGDDDAK-----DLLEALAVEQQIRIATATETLKSVLTLGDPMKMEGAIVRLAREGKVDEPFLLLLEANETQARDA-GATDAANLMKRLKKRATDEKDKQSSSKEIRLIRKLLHEDDPNEREKILEEAFTPKNVLIVPGTAENAQKAVDGEAPDEEQPM--PDVPPPDFINACKAVL 431          
BLAST of EWM24291.1 vs. NCBI_GenBank
Match: gi|676377785|ref|XP_009032171.1| (hypothetical protein AURANDRAFT_60414 [Aureococcus anophagefferens] >gi|323456630|gb|EGB12496.1| hypothetical protein AURANDRAFT_60414 [Aureococcus anophagefferens])

HSP 1 Score: 62.3882 bits (150), Expect = 3.777e-7
Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = 0
Query:   62 EALNSERFDSLVKELLAASDLPALALSKADAF---DYHFMSHLMQRLQASTDDEEIAALNKVGEAVNFAMQQRLAKADFILRGILKSGDLKVMEAKMRKHLRANELDTAFDVILNYN-AQQAREHEGNEAAANILQHLATLLGEERDKK-LPPPTRLLRMLLRSTDEAERQGMLL 231
            EAL +  +D+L+  L+AA+    +A +   AF   DY  ++   +R QA  DD E  AL  V +AVN    +RL +A   L  +LK+GD   M AK+ +   +  +DT    +L  N  Q A        AA ++++LA+   +E DK+   P  RLLR LLRS DE  R+ +L+
Sbjct:  496 EALRT--YDALLTSLVAAAADGNVASAVEGAFERCDYSLLTLASERQQAGGDDAE--ALAAVIDAVNGLAAKRLEQAAARLGSVLKAGDPSKMMAKITELAVSGGVDTQLVELLEANRQQAAAAGPAGAQAAELMKNLASRCRDEMDKRETGPEIRLLRALLRSDDEDTRKQLLV 666          
The following BLAST results are available for this feature:
BLAST of EWM24291.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585105683|gb|EWM24291.1|0.000e+0100.00hypothetical protein Naga_100047g11 [Nannochlorops... [more]
gi|553179368|ref|XP_005852689.1|0.000e+099.36hypothetical protein NGA_0310502 [Nannochloropsis ... [more]
gi|298713792|emb|CBJ27164.1|5.585e-2329.31conserved unknown protein [Ectocarpus siliculosus][more]
gi|1189381844|gb|OSX69489.1|9.474e-1231.43hypothetical protein BU14_1464s0002 [Porphyra umbi... [more]
gi|298709146|emb|CBJ31091.1|1.027e-1028.90conserved unknown protein [Ectocarpus siliculosus][more]
gi|551574851|ref|XP_005773168.1|1.973e-1027.91hypothetical protein EMIHUDRAFT_424731 [Emiliania ... [more]
gi|219122225|ref|XP_002181451.1|2.262e-729.22predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|676377785|ref|XP_009032171.1|3.777e-735.43hypothetical protein AURANDRAFT_60414 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6369rna6369Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications