EWM24299.1, cds6353 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24299.1 vs. NCBI_GenBank
Match: gi|585105691|gb|EWM24299.1| (hypothetical protein Naga_100047g10 [Nannochloropsis gaditana]) HSP 1 Score: 839.721 bits (2168), Expect = 0.000e+0 Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0
Query: 1 MVNECPLCRASAADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGELKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVHVSGKGTQEQAPAFIPPPCPPSRASAGPKPLTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRFPAGKSYALIAEDAQRRTEFALSPSFYHGGGRSNATSTAPAYRHPPSRRRGAECAGADGTDPFSLGVEALQLNVHQLAVSPAGVGVDARELWGKEAVLLNLWAVQRRAAEVVKAYEGLPDVPLPRVERGRMEGKAEGATGGGRGKREMKACSRVICDVNM 410
MVNECPLCRASAADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGELKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVHVSGKGTQEQAPAFIPPPCPPSRASAGPKPLTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRFPAGKSYALIAEDAQRRTEFALSPSFYHGGGRSNATSTAPAYRHPPSRRRGAECAGADGTDPFSLGVEALQLNVHQLAVSPAGVGVDARELWGKEAVLLNLWAVQRRAAEVVKAYEGLPDVPLPRVERGRMEGKAEGATGGGRGKREMKACSRVICDVNM
Sbjct: 1 MVNECPLCRASAADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGELKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVHVSGKGTQEQAPAFIPPPCPPSRASAGPKPLTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRFPAGKSYALIAEDAQRRTEFALSPSFYHGGGRSNATSTAPAYRHPPSRRRGAECAGADGTDPFSLGVEALQLNVHQLAVSPAGVGVDARELWGKEAVLLNLWAVQRRAAEVVKAYEGLPDVPLPRVERGRMEGKAEGATGGGRGKREMKACSRVICDVNM 410
BLAST of EWM24299.1 vs. NCBI_GenBank
Match: gi|299473540|emb|CBN77935.1| (hypothetical protein Esi_0081_0011 [Ectocarpus siliculosus]) HSP 1 Score: 122.094 bits (305), Expect = 8.763e-27 Identity = 125/428 (29.21%), Postives = 200/428 (46.73%), Query Frame = 0
Query: 4 ECPLCRASAADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGE---LKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVH----VSGK---GTQEQAPAF---------------IPPP---CPPSRASAGPKPLTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRFPAGKS-YALIAEDAQRRTEFALSPSFYHGGGRSNATSTAPAYRHPPSRRRGAECAGADGTDPFSLGVEALQLNVHQLAVSPAGVGVDARELWGKEAVLLNLWAVQRRAAEVVKAYEGLPDVPLPRVERGRMEGKAE-----GATGGGRGKRE 397
+C +C A A D L C CV +++A K++ ++ +A +V + V + A L + + + LK ++E A+RV + R+ VA FAL+ R + A L + + + GLR + E ++QR W +V++ FV+ P+E +P + GK G + +P +PPP + G + ++GVST+V LPLPN G+Y + +P +V +L LVAR+ ++A LG+ LPHPL FPA + YA I+ D+ R RS+ P + GA A F ++ L+ ++ L V A V VD+ LW EA+LLNLW +Q+ A +++ + DVPLP + R E K+ G+ GG G R+
Sbjct: 9 KCGVCNAKAGD-LVCGACV-TREAERRRAERAKRLGALESVREAATVAAQERGVAVQHDA--RLQKEEADECRLKDHVREVAKRVAEERIKVASAAFALKHHRDLLAAAESHLSREQASAVEMNEALLIGLRRHAEDAARTLRQRRWRKVVQLFVLLPVEPSMPPRREWPLRGKKNLGGGDHSPGTAPSTAESEEGREVTRLPPPGGGVAKAGGGGGGEVVSGVSTLVDLPLPNNGDYSQ--VPADVLMASLALVARLVAAVASCLGVSLPHPL-FPAASTRYATISVDSSPRE-------------RSSQYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLRNDIVHLCVEGANVPVDS--LWPAEALLLNLWELQQHAMSELRSSSPMVDVPLP-MPRDPPEPKSAGFHRLGSRGGASGSRD 413
BLAST of EWM24299.1 vs. NCBI_GenBank
Match: gi|695373177|ref|XP_009514986.1| (hypothetical protein PHYSODRAFT_308824 [Phytophthora sojae] >gi|348687897|gb|EGZ27711.1| hypothetical protein PHYSODRAFT_308824 [Phytophthora sojae]) HSP 1 Score: 64.3142 bits (155), Expect = 1.120e-7 Identity = 64/259 (24.71%), Postives = 109/259 (42.08%), Query Frame = 0
Query: 3 NECPLCRASAADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGELKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVHVSGKGTQEQAPAFIPPPCPPSRASAGPKPL----------TGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRF 251
+EC LCR SC+ C L ++ +A + + ++ + L T + + L M++ L ++ +T E++ R+AV +T LEER ++ A+ +L+ + S PV + L + + E + R+ E F +F + + G+ T E+ P P + L TIVGLPLP +G Y +P EV AL V + L + L + PHP++F
Sbjct: 4 SECALCRRPRG-SFSCAECTSAMLQQRRTMLAGLQADVAVLRKKTEYALNTKSALVDAELRLERCMKQVERLAEKVMKTREQLCSERIAVVERTSKLEERTVQMEEAQHKLQLESQRAESLHAPVLECLDYQVQWADENAARVRGDRLRELFALFALTPE------GEKTAEEEDDDDPLSGLPDEREGVSEELRQRKARKNVPVFFRTIVGLPLPKSGKYE--NVPPEVVAAALGKVIHLLHCLIKYLKITYPHPMQF 253 The following BLAST results are available for this feature:
BLAST of EWM24299.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|