EWM24299.1, cds6353 (CDS) Nannochloropsis gaditana

Overview
NameEWM24299.1
Unique Namecds6353
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:360680..360919 +
Alignment locationCM002468.1:361035..361289 +
Alignment locationCM002468.1:361455..361602 +
Alignment locationCM002468.1:361864..362020 +
Alignment locationCM002468.1:362170..362528 +
Alignment locationCM002468.1:362679..362752 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24299.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100047g10.6062.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:360680..360919 +
CM002468.1supercontigCM002468.1:361035..361289 +
CM002468.1supercontigCM002468.1:361455..361602 +
CM002468.1supercontigCM002468.1:361864..362020 +
CM002468.1supercontigCM002468.1:362170..362528 +
CM002468.1supercontigCM002468.1:362679..362752 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0010508positive regulation of autophagy
Vocabulary: INTERPRO
TermDefinition
IPR018791UV_resistance/autophagy_Atg14
Homology
BLAST of EWM24299.1 vs. NCBI_GenBank
Match: gi|585105691|gb|EWM24299.1| (hypothetical protein Naga_100047g10 [Nannochloropsis gaditana])

HSP 1 Score: 839.721 bits (2168), Expect = 0.000e+0
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0
Query:    1 MVNECPLCRASAADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGELKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVHVSGKGTQEQAPAFIPPPCPPSRASAGPKPLTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRFPAGKSYALIAEDAQRRTEFALSPSFYHGGGRSNATSTAPAYRHPPSRRRGAECAGADGTDPFSLGVEALQLNVHQLAVSPAGVGVDARELWGKEAVLLNLWAVQRRAAEVVKAYEGLPDVPLPRVERGRMEGKAEGATGGGRGKREMKACSRVICDVNM 410
            MVNECPLCRASAADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGELKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVHVSGKGTQEQAPAFIPPPCPPSRASAGPKPLTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRFPAGKSYALIAEDAQRRTEFALSPSFYHGGGRSNATSTAPAYRHPPSRRRGAECAGADGTDPFSLGVEALQLNVHQLAVSPAGVGVDARELWGKEAVLLNLWAVQRRAAEVVKAYEGLPDVPLPRVERGRMEGKAEGATGGGRGKREMKACSRVICDVNM
Sbjct:    1 MVNECPLCRASAADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGELKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVHVSGKGTQEQAPAFIPPPCPPSRASAGPKPLTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRFPAGKSYALIAEDAQRRTEFALSPSFYHGGGRSNATSTAPAYRHPPSRRRGAECAGADGTDPFSLGVEALQLNVHQLAVSPAGVGVDARELWGKEAVLLNLWAVQRRAAEVVKAYEGLPDVPLPRVERGRMEGKAEGATGGGRGKREMKACSRVICDVNM 410          
BLAST of EWM24299.1 vs. NCBI_GenBank
Match: gi|299473540|emb|CBN77935.1| (hypothetical protein Esi_0081_0011 [Ectocarpus siliculosus])

HSP 1 Score: 122.094 bits (305), Expect = 8.763e-27
Identity = 125/428 (29.21%), Postives = 200/428 (46.73%), Query Frame = 0
Query:    4 ECPLCRASAADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGE---LKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVH----VSGK---GTQEQAPAF---------------IPPP---CPPSRASAGPKPLTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRFPAGKS-YALIAEDAQRRTEFALSPSFYHGGGRSNATSTAPAYRHPPSRRRGAECAGADGTDPFSLGVEALQLNVHQLAVSPAGVGVDARELWGKEAVLLNLWAVQRRAAEVVKAYEGLPDVPLPRVERGRMEGKAE-----GATGGGRGKRE 397
            +C +C A A D L C  CV      +++A   K++   ++  +A +V    + V  +  A   L + + +   LK  ++E A+RV + R+ VA   FAL+  R  +  A   L   +      +  +  GLR + E     ++QR W +V++ FV+ P+E  +P      + GK   G  + +P                 +PPP      +    G + ++GVST+V LPLPN G+Y +  +P +V   +L LVAR+  ++A  LG+ LPHPL FPA  + YA I+ D+  R              RS+     P  +       GA  A       F   ++ L+ ++  L V  A V VD+  LW  EA+LLNLW +Q+ A   +++   + DVPLP + R   E K+      G+ GG  G R+
Sbjct:    9 KCGVCNAKAGD-LVCGACV-TREAERRRAERAKRLGALESVREAATVAAQERGVAVQHDA--RLQKEEADECRLKDHVREVAKRVAEERIKVASAAFALKHHRDLLAAAESHLSREQASAVEMNEALLIGLRRHAEDAARTLRQRRWRKVVQLFVLLPVEPSMPPRREWPLRGKKNLGGGDHSPGTAPSTAESEEGREVTRLPPPGGGVAKAGGGGGGEVVSGVSTLVDLPLPNNGDYSQ--VPADVLMASLALVARLVAAVASCLGVSLPHPL-FPAASTRYATISVDSSPRE-------------RSSQYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLRNDIVHLCVEGANVPVDS--LWPAEALLLNLWELQQHAMSELRSSSPMVDVPLP-MPRDPPEPKSAGFHRLGSRGGASGSRD 413          
BLAST of EWM24299.1 vs. NCBI_GenBank
Match: gi|695373177|ref|XP_009514986.1| (hypothetical protein PHYSODRAFT_308824 [Phytophthora sojae] >gi|348687897|gb|EGZ27711.1| hypothetical protein PHYSODRAFT_308824 [Phytophthora sojae])

HSP 1 Score: 64.3142 bits (155), Expect = 1.120e-7
Identity = 64/259 (24.71%), Postives = 109/259 (42.08%), Query Frame = 0
Query:    3 NECPLCRASAADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGELKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVHVSGKGTQEQAPAFIPPPCPPSRASAGPKPL----------TGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRF 251
            +EC LCR       SC+ C    L  ++  +A  +  +    ++ +  L T   +   +  L   M++   L  ++ +T E++   R+AV  +T  LEER   ++ A+ +L+   +   S   PV + L +  +   E   +    R+ E F +F +  +      G+ T E+     P    P       + L              TIVGLPLP +G Y    +P EV   AL  V  +   L + L +  PHP++F
Sbjct:    4 SECALCRRPRG-SFSCAECTSAMLQQRRTMLAGLQADVAVLRKKTEYALNTKSALVDAELRLERCMKQVERLAEKVMKTREQLCSERIAVVERTSKLEERTVQMEEAQHKLQLESQRAESLHAPVLECLDYQVQWADENAARVRGDRLRELFALFALTPE------GEKTAEEEDDDDPLSGLPDEREGVSEELRQRKARKNVPVFFRTIVGLPLPKSGKYE--NVPPEVVAAALGKVIHLLHCLIKYLKITYPHPMQF 253          
The following BLAST results are available for this feature:
BLAST of EWM24299.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105691|gb|EWM24299.1|0.000e+0100.00hypothetical protein Naga_100047g10 [Nannochlorops... [more]
gi|299473540|emb|CBN77935.1|8.763e-2729.21hypothetical protein Esi_0081_0011 [Ectocarpus sil... [more]
gi|695373177|ref|XP_009514986.1|1.120e-724.71hypothetical protein PHYSODRAFT_308824 [Phytophtho... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6368rna6368Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications