EWM24301.1, cds6349 (CDS) Nannochloropsis gaditana

Overview
NameEWM24301.1
Unique Namecds6349
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:354714..354764 -
Alignment locationCM002468.1:354450..354542 -
Alignment locationCM002468.1:353704..354166 -
Alignment locationCM002468.1:353269..353504 -
Alignment locationCM002468.1:352885..353082 -
Alignment locationCM002468.1:352529..352772 -
Alignment locationCM002468.1:352248..352300 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24301.1
Productsuccinate- ligase
Orig transcript idgnl|cribi|Naga_100047g7.6064.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:354714..354764 -
CM002468.1supercontigCM002468.1:354450..354542 -
CM002468.1supercontigCM002468.1:353704..354166 -
CM002468.1supercontigCM002468.1:353269..353504 -
CM002468.1supercontigCM002468.1:352885..353082 -
CM002468.1supercontigCM002468.1:352529..352772 -
CM002468.1supercontigCM002468.1:352248..352300 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006091generation of precursor metabolites and energy
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0046872metal ion binding
GO:0005524ATP binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011761ATP-grasp
IPR017866Succ-CoA_synthase_bsu_CS
IPR016102Succinyl-CoA_synth-like
IPR013815ATP_grasp_subdomain_1
IPR005811CoA_ligase
IPR013816ATP_grasp_subdomain_2
IPR013650ATP-grasp_succ-CoA_synth-type
IPR005809Succ_CoA_synthase_bsu
Homology
BLAST of EWM24301.1 vs. NCBI_GenBank
Match: gi|585105693|gb|EWM24301.1| (succinate- ligase [Nannochloropsis gaditana])

HSP 1 Score: 907.901 bits (2345), Expect = 0.000e+0
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query:    1 MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQVNNPTFLPL 445
            MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQVNNPTFLPL
Sbjct:    1 MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQVNNPTFLPL 445          
BLAST of EWM24301.1 vs. NCBI_GenBank
Match: gi|585105692|gb|EWM24300.1| (succinate- ligase [Nannochloropsis gaditana])

HSP 1 Score: 870.537 bits (2248), Expect = 0.000e+0
Identity = 427/427 (100.00%), Postives = 427/427 (100.00%), Query Frame = 0
Query:    1 MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427
            MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ
Sbjct:    1 MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427          
BLAST of EWM24301.1 vs. NCBI_GenBank
Match: gi|1210518701|dbj|GAX22577.1| (succinyl-CoA synthetase beta subunit [Fistulifera solaris])

HSP 1 Score: 586.645 bits (1511), Expect = 0.000e+0
Identity = 285/416 (68.51%), Postives = 338/416 (81.25%), Query Frame = 0
Query:   26 RMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKG-----DAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQ 436
            R LNVHEY+SM+IM+ +GI TP   V S+ +EAE ++V+ LNK      D V+KAQVLSGGRGLG FK+GFKGGVH+ T  G  + F +SMLG+ LVTKQ+ P GI+CNKVLL+ER+YMR EMYLSI+MDR +QGP++VASP GGTSIEDVAA+NPE IFT+PIDI  GL++E A  +A  +GLEPG+  HA    L+K LY M IA D T VE+NPLAET  G IV  DAK+NFDDNAE+RQ  IFA+RD TQEDPREV A +YDLNYIGL GNIGCMVNGAGLAMSTMDII+LKGG PANFLDVGGGA+E+QV KAFEILNADPKVK ILVNIFGGIMRCDVIA GIL+A K+IG+ KPIVIRLQGTNVD+A+ LI+ S +RMI+ D+LE AA KAV +A IV QAE +++DV+
Sbjct:   23 RHLNVHEYVSMEIMQAHGIKTPNCSVASTPEEAEQIFVHKLNKPGTPLQDVVIKAQVLSGGRGLGHFKSGFKGGVHMVTKAGQARDFAKSMLGEELVTKQA-PNGIICNKVLLMERMYMRNEMYLSILMDRASQGPLMVASPRGGTSIEDVAATNPEVIFTQPIDITVGLTDEQAQRMAGNLGLEPGSEGHAQAVTLMKNLYNMFIACDCTQVEVNPLAETPSGDIVVCDAKVNFDDNAEFRQTGIFARRDTTQEDPREVAASEYDLNYIGLDGNIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGASEQQVQKAFEILNADPKVKAILVNIFGGIMRCDVIANGILNAVKEIGISKPIVIRLQGTNVDKAKTLIEGSPYRMILADDLEAAAEKAVGVAEIVAQAEKIEVDVK 437          
BLAST of EWM24301.1 vs. NCBI_GenBank
Match: gi|1210530740|dbj|GAX10691.1| (succinyl-CoA synthetase beta subunit [Fistulifera solaris])

HSP 1 Score: 586.26 bits (1510), Expect = 0.000e+0
Identity = 289/436 (66.28%), Postives = 346/436 (79.36%), Query Frame = 0
Query:    6 MNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKG-----DAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQ 436
            M + R S A+ +  L     R LNVHEY+SM+IM+ +GI TP   V S+ +EAE ++++ LNK      D V+KAQVLSGGRGLG FK+GFKGGVH+ T  G  + F +SMLG+ LVTKQ+ P GI+CNKVLL+ER+YMR EMYLSI+MDR +QGP++VASP GGTSIEDVAA+NPE IFT+PIDI  GL++E A  +A  +GLEPG+  HA    L+K LY M IA D T VE+NPLAET  G IV  DAK+NFDDNAE+RQ  IFA+RD TQEDPREV A +YDLNYIGL GNIGCMVNGAGLAMSTMDII+LKGG PANFLDVGGGA+E+QV KAFEILNADPKVK ILVNIFGGIMRCDVIA GIL+A K+IG+ KPIVIRLQGTNVD+A+ LI+ S +RMI+ D+LE AA KAV +A IV QAE +++DV+
Sbjct:    1 MLALRCSFARPR--LTAGAVRHLNVHEYVSMEIMQAHGIKTPNCSVASTPEEAEQIFLHKLNKPGTPLLDVVIKAQVLSGGRGLGHFKSGFKGGVHMVTKAGQARDFAKSMLGEELVTKQA-PNGIICNKVLLMERMYMRNEMYLSILMDRASQGPLMVASPRGGTSIEDVAATNPEVIFTQPIDITVGLTDEQAQRMAGNLGLEPGSEGHAQAVTLMKNLYNMFIACDCTQVEVNPLAETPSGDIVVCDAKVNFDDNAEFRQTGIFARRDTTQEDPREVAASEYDLNYIGLDGNIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGASEQQVQKAFEILNADPKVKAILVNIFGGIMRCDVIANGILNAVKEIGISKPIVIRLQGTNVDKAKTLIEGSPYRMILADDLEAAAEKAVGVAEIVAQAEKIEVDVK 433          
BLAST of EWM24301.1 vs. NCBI_GenBank
Match: gi|223993443|ref|XP_002286405.1| (precursor of synthetase [Thalassiosira pseudonana CCMP1335] >gi|220977720|gb|EED96046.1| precursor of synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0
Identity = 281/411 (68.37%), Postives = 335/411 (81.51%), Query Frame = 0
Query:   26 RMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQ 436
            R LNVHEYISM+IM  +GIATP   V +S +EAEH++  M+NK   V+KAQVLSGGRGLGTFKNGFKGGVH+ T  G   +   SMLGQ LVTKQ+ P GI+C KVLL+ER+YMR EMYLSI+MDR + GP++V SP GGTSIEDVA SNPE IFTEPIDI  GL+ EAA  +A  IGLE GT +HA    L+  LY M +  D T VE+NPLAET +G +V  DAK+NFDDNAE+RQK IF +RD++QEDPREVEA KYDLNYIGL GNIGCMVNGAGLAMSTMDII+LKGG PANFLDVGGGA E+QV KAFE+LN+D KV+ ILVNIFGGIMRCDVIA GI++AA++IG+KKP+VIRLQGTNVD A+KLI+  GFRMI+ ++LE+AA KAV +A IVKQA+++K+ +Q
Sbjct:    5 RNLNVHEYISMEIMNQHGIATPKNFVANSPEEAEHIFTTMMNK-HVVIKAQVLSGGRGLGTFKNGFKGGVHMVTRKGQAAEMASSMLGQELVTKQA-PNGILCQKVLLMERMYMRNEMYLSILMDRASGGPLLVGSPRGGTSIEDVAHSNPELIFTEPIDINVGLTVEAANRMARNIGLEEGTESHAKAVTLINNLYDMFLGCDCTQVEVNPLAETPEGDVVVCDAKVNFDDNAEFRQKSIFERRDFSQEDPREVEASKYDLNYIGLDGNIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGANEKQVQKAFELLNSDDKVQAILVNIFGGIMRCDVIATGIINAAQEIGIKKPLVIRLQGTNVDAARKLIEGCGFRMILAEDLEDAAEKAVGVAEIVKQAQNIKVGLQ 413          
BLAST of EWM24301.1 vs. NCBI_GenBank
Match: gi|219117017|ref|XP_002179303.1| (beta chain succinyl-coa synthetase synthetase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409194|gb|EEC49126.1| beta chain succinyl-coa synthetase synthetase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 281/416 (67.55%), Postives = 336/416 (80.77%), Query Frame = 0
Query:   26 RMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLN-----KGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQ 436
            R LNVHEYISM+IMK +GI TP   V S+ +EAE++++N LN     K D V+KAQVLSGGRGLGTFKNGFKGGVH+ T  G  ++F  +MLG  LVTKQ+ P GIVCNKVLL+ER+YMRREMYLSI+MDR +QGP++VASP GGTSIEDVAA+NPE IFT+PIDI EGL+ E A  +A+ +GLE G+  H     L++ LY M IA D T VE+NPLAET +G IV  DAK+NFDDNAE+RQ  IFA+RD +QED REV+A KYDLNYIGL G IGCMVNGAGLAMSTMDII+LKGG PANFLDVGGGA E QV KAFEILN+D +VK ILVNIFGGIMRCDVIA GI++AAK+IG+ KPIVIRLQGTNV+EA+ LI+  GFRMI+ ++LE+AA KAV +A I  QAE +++ V+
Sbjct:   23 RNLNVHEYISMEIMKNHGIQTPECYVASNPEEAENIFLNSLNRPGAPKKDIVIKAQVLSGGRGLGTFKNGFKGGVHMVTKPGQAREFAAAMLGNELVTKQA-PNGIVCNKVLLMERMYMRREMYLSILMDRGSQGPLLVASPRGGTSIEDVAATNPEVIFTQPIDITEGLTPEGAHRMASNLGLEEGSTGHDKAVILMQNLYSMFIACDCTQVEVNPLAETPEGDIVVCDAKVNFDDNAEFRQSSIFARRDTSQEDVREVDASKYDLNYIGLEGTIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGANETQVQKAFEILNSDSQVKAILVNIFGGIMRCDVIATGIINAAKEIGINKPIVIRLQGTNVNEAKTLIEGCGFRMILAEDLEDAAEKAVGVAEIAAQAEKIQVGVK 437          
BLAST of EWM24301.1 vs. NCBI_GenBank
Match: gi|1173940443|gb|OQR89856.1| (succinyl-CoA ligase beta-chain, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 283/435 (65.06%), Postives = 337/435 (77.47%), Query Frame = 0
Query:   12 SGAKQKALLR--GQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKG----DAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQVNNP 440
            + AK  +LLR  G Q R LN+HEY SM+IMK +G+A P+    S+  EAE  Y N L  G    D V+KAQ L+GGRGLG FKNGFKGGVH+ T   D K F E M+G+ LVTKQ+G  GI   KV L+ER+YMRREMY SI+MDR +QGP++VASP GGTSIEDVA + PE IFTEP+DI  G + E  A +AT +GL     +H  G +L+  LYKM I TDATLVEINPLAET +G + A DAK+NFDDNA +R K IFAKRD TQEDPREVEA +YDLNYIGL GNIGC+VNGAGLAM+TMDII L GG PANFLDVGGGATE QV KAFEILNAD +VK+ILVNIFGGIMRCDVIAAG+++AAK +GMKKPIVIRLQGTNV++A++LI+ SGFRMIV ++L++AA KAV IA+IV QAE+V ++V    P
Sbjct:    4 TAAKASSLLRVPGHQVRRLNLHEYQSMEIMKSFGVAVPSSLPASTPAEAEAAY-NTLKGGNHAKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKNFAEKMIGETLVTKQTGEKGIEVAKVFLMERVYMRREMYFSILMDRASQGPVLVASPAGGTSIEDVAHATPELIFTEPVDITTGPTNEQLARLATNMGLS--GESHVRGVELMGNLYKMFIGTDATLVEINPLAETPEGHVFACDAKINFDDNAAFRHKDIFAKRDKTQEDPREVEASQYDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATESQVKKAFEILNADTQVKSILVNIFGGIMRCDVIAAGVIAAAKDLGMKKPIVIRLQGTNVEKARQLIENSGFRMIVANDLDDAAQKAVKIADIVSQAEEVHVNVSFELP 435          
BLAST of EWM24301.1 vs. NCBI_GenBank
Match: gi|1173942210|gb|OQR91248.1| (succinyl-CoA ligase beta-chain, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 282/433 (65.13%), Postives = 336/433 (77.60%), Query Frame = 0
Query:   14 AKQKALLR--GQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKG----DAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQVNNP 440
            AK   LLR  GQQ R LN+HEY SM+IMK +G+A P     S+  EAE  Y N L  G    D V+KAQ L+GGRGLG FKNGFKGGVH+ T   D K F E M+G+ LVTKQ+G  GI   KV L+ER+YMRREMY SI+MDR +QGP++VASP GGTSIEDVA + PE IF E +DI +G + E  + +AT +GL     +H  G +L+  LYKM I TDATLVEINPLAET +G++ A DAK+NFDDNA +R K+IFAKRD TQEDPREVEA  YDLNYIGL GNIGC+VNGAGLAM+TMDII L GG PANFLDVGGGATE QV KAFEILNADP+VK+ILVNIFGGIMRCDVIAAG+++AAK +GMKKPIVIRLQGTNV++A++LI+ SGFRMIV ++L++AA KAV IA+IV QAE+V ++V    P
Sbjct:    8 AKSAPLLRAPGQQVRRLNLHEYQSMEIMKSFGVAVPASLPASTPAEAEAAY-NTLKGGHAGKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKNFAEKMIGETLVTKQTGEKGIEVAKVFLMERVYMRREMYFSILMDRASQGPVLVASPAGGTSIEDVAHATPELIFKEAVDITKGPTNEQLSRLATSMGLS--GESHTRGVELMNNLYKMFIGTDATLVEINPLAETPEGQVFACDAKINFDDNASFRHKEIFAKRDKTQEDPREVEASAYDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATESQVKKAFEILNADPQVKSILVNIFGGIMRCDVIAAGVIAAAKDLGMKKPIVIRLQGTNVEKARQLIENSGFRMIVANDLDDAAQKAVKIADIVAQAEEVHVNVSFELP 437          
BLAST of EWM24301.1 vs. NCBI_GenBank
Match: gi|298712066|emb|CBJ26646.1| (beta chain succinyl-coa synthetase synthetase [Ectocarpus siliculosus])

HSP 1 Score: 540.806 bits (1392), Expect = 0.000e+0
Identity = 278/439 (63.33%), Postives = 331/439 (75.40%), Query Frame = 0
Query:    7 NSARLSGAKQKALL-RGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKG---DAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQVNNPT 441
            NS  LSG    A    GQQ R LNVHEY+SM IM  + I  P  ++  + ++AE     ++      D V+KAQVLSGGRG G F NGF+ GVH+     D K +   MLGQ L+TKQ+G  G+ C+KVLL+ER+YMRREMYLSIMMDR +QGP+IVA P GGTSIED+A SNPE I  E +DIM GL++  A  IA  + L     ++ AG  L+K +Y M I  D TLVEINPLAET +GR++A DAKLNFDDNAE+RQK  F  RDYTQED REVEA KYDLNYIGL+GNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQV KAFE+LNADPKV TILVNIFGGIMRCDVIA+G+++AAK IGMKKPIVIRLQGTNV++A +LI  SGF+MI+ ++L++AA KAVA+A I  QA  V IDV++   +
Sbjct:   24 NSPLLSGKPISATGGAGQQVRRLNVHEYVSMQIMAEHDIDIPASKMAETPEDAEKACAEIMGGNAMKDVVIKAQVLSGGRGRGHFDNGFESGVHMCLKPSDAKHYASEMLGQKLITKQTGEDGLPCDKVLLMERMYMRREMYLSIMMDRGSQGPVIVACPDGGTSIEDLAESNPELIMKEEVDIMTGLTDAQAGKIAEHLKLSSDGPSYEAGKTLLKNMYAMFIERDCTLVEINPLAETPEGRVMACDAKLNFDDNAEWRQKDTFQFRDYTQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVQKAFELLNADPKVATILVNIFGGIMRCDVIASGVINAAKSIGMKKPIVIRLQGTNVEQANELIANSGFKMIISNDLDDAAEKAVAVAEIYSQATKVGIDVELQTAS 462          
BLAST of EWM24301.1 vs. NCBI_GenBank
Match: gi|813171292|ref|XP_012204401.1| (hypothetical protein SPRG_09585 [Saprolegnia parasitica CBS 223.65] >gi|641530836|gb|KDO24941.1| hypothetical protein SPRG_09585 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 525.013 bits (1351), Expect = 0.000e+0
Identity = 278/433 (64.20%), Postives = 329/433 (75.98%), Query Frame = 0
Query:   14 AKQKALLR--GQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDA----VVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQVNNP 440
            AK   LLR  GQQ R LN+HEY SM+IMK +G+A P     ++  EAE  Y N L  GDA    V+KAQ L+GGRGLG FKNGFKGGVH+ T   D K F E MLG+ LVTKQ+G  GI   KV L+ER+YMRREMY SI+MDR + GP++VASP GGTSIEDVA + PE IF E ++I  G + E    +A  +GL     +   G +L+  LY M I TDATLVEINPLAET +G + A DAK+NFDDNA +R K IFAKRD TQEDPREVEA  YDLNYIGL GNIGC+VNGAGLAM+TMDII L GG PANFLDVGGGATE QV KAFEILNADP+VK+ILVNIFGGIMRCDVIAAG+++AAK +GMKKPIVIRLQGTNV++A++LI+ SGFRMIV ++L++AA KAV IA+IV QAE+V ++V    P
Sbjct:    8 AKATPLLRAPGQQVRRLNLHEYQSMEIMKSFGVAIPASLHATTPAEAEAAY-NTLKGGDATKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKNFAEKMLGETLVTKQTGEKGIEVAKVFLMERVYMRREMYFSILMDRASNGPVLVASPAGGTSIEDVAHATPELIFKEAVNITTGPTSEQLNRLAANMGLS--GESQKRGVELMNNLYNMFIGTDATLVEINPLAETPEGNVYACDAKINFDDNASFRHKDIFAKRDKTQEDPREVEASAYDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATESQVKKAFEILNADPQVKSILVNIFGGIMRCDVIAAGVIAAAKDLGMKKPIVIRLQGTNVEKARQLIENSGFRMIVANDLDDAAQKAVKIADIVAQAEEVHVNVSFELP 437          
The following BLAST results are available for this feature:
BLAST of EWM24301.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105693|gb|EWM24301.1|0.000e+0100.00succinate- ligase [Nannochloropsis gaditana][more]
gi|585105692|gb|EWM24300.1|0.000e+0100.00succinate- ligase [Nannochloropsis gaditana][more]
gi|1210518701|dbj|GAX22577.1|0.000e+068.51succinyl-CoA synthetase beta subunit [Fistulifera ... [more]
gi|1210530740|dbj|GAX10691.1|0.000e+066.28succinyl-CoA synthetase beta subunit [Fistulifera ... [more]
gi|223993443|ref|XP_002286405.1|0.000e+068.37precursor of synthetase [Thalassiosira pseudonana ... [more]
gi|219117017|ref|XP_002179303.1|0.000e+067.55beta chain succinyl-coa synthetase synthetase [Pha... [more]
gi|1173940443|gb|OQR89856.1|0.000e+065.06succinyl-CoA ligase beta-chain, mitochondrial prec... [more]
gi|1173942210|gb|OQR91248.1|0.000e+065.13succinyl-CoA ligase beta-chain, mitochondrial prec... [more]
gi|298712066|emb|CBJ26646.1|0.000e+063.33beta chain succinyl-coa synthetase synthetase [Ect... [more]
gi|813171292|ref|XP_012204401.1|0.000e+064.20hypothetical protein SPRG_09585 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6364rna6364Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications