EWM24300.1, cds6348 (CDS) Nannochloropsis gaditana

Overview
NameEWM24300.1
Unique Namecds6348
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:354714..354764 -
Alignment locationCM002468.1:354450..354542 -
Alignment locationCM002468.1:353704..354166 -
Alignment locationCM002468.1:353269..353504 -
Alignment locationCM002468.1:352885..353082 -
Alignment locationCM002468.1:352533..352772 -
Alignment locationCM002468.1:352292..352300 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24300.1
Productsuccinate- ligase
Orig transcript idgnl|cribi|Naga_100047g7.6063.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:354714..354764 -
CM002468.1supercontigCM002468.1:354450..354542 -
CM002468.1supercontigCM002468.1:353704..354166 -
CM002468.1supercontigCM002468.1:353269..353504 -
CM002468.1supercontigCM002468.1:352885..353082 -
CM002468.1supercontigCM002468.1:352533..352772 -
CM002468.1supercontigCM002468.1:352292..352300 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006091generation of precursor metabolites and energy
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0046872metal ion binding
GO:0005524ATP binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011761ATP-grasp
IPR017866Succ-CoA_synthase_bsu_CS
IPR005811CoA_ligase
IPR013650ATP-grasp_succ-CoA_synth-type
IPR013815ATP_grasp_subdomain_1
IPR013816ATP_grasp_subdomain_2
IPR016102Succinyl-CoA_synth-like
IPR005809Succ_CoA_synthase_bsu
Homology
BLAST of EWM24300.1 vs. NCBI_GenBank
Match: gi|585105692|gb|EWM24300.1| (succinate- ligase [Nannochloropsis gaditana])

HSP 1 Score: 875.544 bits (2261), Expect = 0.000e+0
Identity = 429/429 (100.00%), Postives = 429/429 (100.00%), Query Frame = 0
Query:    1 MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQRT 429
            MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQRT
Sbjct:    1 MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQRT 429          
BLAST of EWM24300.1 vs. NCBI_GenBank
Match: gi|585105693|gb|EWM24301.1| (succinate- ligase [Nannochloropsis gaditana])

HSP 1 Score: 870.537 bits (2248), Expect = 0.000e+0
Identity = 427/427 (100.00%), Postives = 427/427 (100.00%), Query Frame = 0
Query:    1 MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427
            MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ
Sbjct:    1 MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427          
BLAST of EWM24300.1 vs. NCBI_GenBank
Match: gi|1210518701|dbj|GAX22577.1| (succinyl-CoA synthetase beta subunit [Fistulifera solaris])

HSP 1 Score: 577.4 bits (1487), Expect = 0.000e+0
Identity = 281/407 (69.04%), Postives = 330/407 (81.08%), Query Frame = 0
Query:   26 RMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKG-----DAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427
            R LNVHEY+SM+IM+ +GI TP   V S+ +EAE ++V+ LNK      D V+KAQVLSGGRGLG FK+GFKGGVH+ T  G  + F +SMLG+ LVTKQ+ P GI+CNKVLL+ER+YMR EMYLSI+MDR +QGP++VASP GGTSIEDVAA+NPE IFT+PIDI  GL++E A  +A  +GLEPG+  HA    L+K LY M IA D T VE+NPLAET  G IV  DAK+NFDDNAE+RQ  IFA+RD TQEDPREV A +YDLNYIGL GNIGCMVNGAGLAMSTMDII+LKGG PANFLDVGGGA+E+QV KAFEILNADPKVK ILVNIFGGIMRCDVIA GIL+A K+IG+ KPIVIRLQGTNVD+A+ LI+ S +RMI+ D+LE AA KAV +A IV Q
Sbjct:   23 RHLNVHEYVSMEIMQAHGIKTPNCSVASTPEEAEQIFVHKLNKPGTPLQDVVIKAQVLSGGRGLGHFKSGFKGGVHMVTKAGQARDFAKSMLGEELVTKQA-PNGIICNKVLLMERMYMRNEMYLSILMDRASQGPLMVASPRGGTSIEDVAATNPEVIFTQPIDITVGLTDEQAQRMAGNLGLEPGSEGHAQAVTLMKNLYNMFIACDCTQVEVNPLAETPSGDIVVCDAKVNFDDNAEFRQTGIFARRDTTQEDPREVAASEYDLNYIGLDGNIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGASEQQVQKAFEILNADPKVKAILVNIFGGIMRCDVIANGILNAVKEIGISKPIVIRLQGTNVDKAKTLIEGSPYRMILADDLEAAAEKAVGVAEIVAQ 428          
BLAST of EWM24300.1 vs. NCBI_GenBank
Match: gi|1210530740|dbj|GAX10691.1| (succinyl-CoA synthetase beta subunit [Fistulifera solaris])

HSP 1 Score: 577.015 bits (1486), Expect = 0.000e+0
Identity = 285/427 (66.74%), Postives = 338/427 (79.16%), Query Frame = 0
Query:    6 MNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKG-----DAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427
            M + R S A+ +  L     R LNVHEY+SM+IM+ +GI TP   V S+ +EAE ++++ LNK      D V+KAQVLSGGRGLG FK+GFKGGVH+ T  G  + F +SMLG+ LVTKQ+ P GI+CNKVLL+ER+YMR EMYLSI+MDR +QGP++VASP GGTSIEDVAA+NPE IFT+PIDI  GL++E A  +A  +GLEPG+  HA    L+K LY M IA D T VE+NPLAET  G IV  DAK+NFDDNAE+RQ  IFA+RD TQEDPREV A +YDLNYIGL GNIGCMVNGAGLAMSTMDII+LKGG PANFLDVGGGA+E+QV KAFEILNADPKVK ILVNIFGGIMRCDVIA GIL+A K+IG+ KPIVIRLQGTNVD+A+ LI+ S +RMI+ D+LE AA KAV +A IV Q
Sbjct:    1 MLALRCSFARPR--LTAGAVRHLNVHEYVSMEIMQAHGIKTPNCSVASTPEEAEQIFLHKLNKPGTPLLDVVIKAQVLSGGRGLGHFKSGFKGGVHMVTKAGQARDFAKSMLGEELVTKQA-PNGIICNKVLLMERMYMRNEMYLSILMDRASQGPLMVASPRGGTSIEDVAATNPEVIFTQPIDITVGLTDEQAQRMAGNLGLEPGSEGHAQAVTLMKNLYNMFIACDCTQVEVNPLAETPSGDIVVCDAKVNFDDNAEFRQTGIFARRDTTQEDPREVAASEYDLNYIGLDGNIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGASEQQVQKAFEILNADPKVKAILVNIFGGIMRCDVIANGILNAVKEIGISKPIVIRLQGTNVDKAKTLIEGSPYRMILADDLEAAAEKAVGVAEIVAQ 424          
BLAST of EWM24300.1 vs. NCBI_GenBank
Match: gi|223993443|ref|XP_002286405.1| (precursor of synthetase [Thalassiosira pseudonana CCMP1335] >gi|220977720|gb|EED96046.1| precursor of synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0
Identity = 278/402 (69.15%), Postives = 327/402 (81.34%), Query Frame = 0
Query:   26 RMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427
            R LNVHEYISM+IM  +GIATP   V +S +EAEH++  M+NK   V+KAQVLSGGRGLGTFKNGFKGGVH+ T  G   +   SMLGQ LVTKQ+ P GI+C KVLL+ER+YMR EMYLSI+MDR + GP++V SP GGTSIEDVA SNPE IFTEPIDI  GL+ EAA  +A  IGLE GT +HA    L+  LY M +  D T VE+NPLAET +G +V  DAK+NFDDNAE+RQK IF +RD++QEDPREVEA KYDLNYIGL GNIGCMVNGAGLAMSTMDII+LKGG PANFLDVGGGA E+QV KAFE+LN+D KV+ ILVNIFGGIMRCDVIA GI++AA++IG+KKP+VIRLQGTNVD A+KLI+  GFRMI+ ++LE+AA KAV +A IVKQ
Sbjct:    5 RNLNVHEYISMEIMNQHGIATPKNFVANSPEEAEHIFTTMMNK-HVVIKAQVLSGGRGLGTFKNGFKGGVHMVTRKGQAAEMASSMLGQELVTKQA-PNGILCQKVLLMERMYMRNEMYLSILMDRASGGPLLVGSPRGGTSIEDVAHSNPELIFTEPIDINVGLTVEAANRMARNIGLEEGTESHAKAVTLINNLYDMFLGCDCTQVEVNPLAETPEGDVVVCDAKVNFDDNAEFRQKSIFERRDFSQEDPREVEASKYDLNYIGLDGNIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGANEKQVQKAFELLNSDDKVQAILVNIFGGIMRCDVIATGIINAAQEIGIKKPLVIRLQGTNVDAARKLIEGCGFRMILAEDLEDAAEKAVGVAEIVKQ 404          
BLAST of EWM24300.1 vs. NCBI_GenBank
Match: gi|219117017|ref|XP_002179303.1| (beta chain succinyl-coa synthetase synthetase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409194|gb|EEC49126.1| beta chain succinyl-coa synthetase synthetase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 570.081 bits (1468), Expect = 0.000e+0
Identity = 278/407 (68.30%), Postives = 329/407 (80.84%), Query Frame = 0
Query:   26 RMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLN-----KGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427
            R LNVHEYISM+IMK +GI TP   V S+ +EAE++++N LN     K D V+KAQVLSGGRGLGTFKNGFKGGVH+ T  G  ++F  +MLG  LVTKQ+ P GIVCNKVLL+ER+YMRREMYLSI+MDR +QGP++VASP GGTSIEDVAA+NPE IFT+PIDI EGL+ E A  +A+ +GLE G+  H     L++ LY M IA D T VE+NPLAET +G IV  DAK+NFDDNAE+RQ  IFA+RD +QED REV+A KYDLNYIGL G IGCMVNGAGLAMSTMDII+LKGG PANFLDVGGGA E QV KAFEILN+D +VK ILVNIFGGIMRCDVIA GI++AAK+IG+ KPIVIRLQGTNV+EA+ LI+  GFRMI+ ++LE+AA KAV +A I  Q
Sbjct:   23 RNLNVHEYISMEIMKNHGIQTPECYVASNPEEAENIFLNSLNRPGAPKKDIVIKAQVLSGGRGLGTFKNGFKGGVHMVTKPGQAREFAAAMLGNELVTKQA-PNGIVCNKVLLMERMYMRREMYLSILMDRGSQGPLLVASPRGGTSIEDVAATNPEVIFTQPIDITEGLTPEGAHRMASNLGLEEGSTGHDKAVILMQNLYSMFIACDCTQVEVNPLAETPEGDIVVCDAKVNFDDNAEFRQSSIFARRDTSQEDVREVDASKYDLNYIGLEGTIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGANETQVQKAFEILNSDSQVKAILVNIFGGIMRCDVIATGIINAAKEIGINKPIVIRLQGTNVNEAKTLIEGCGFRMILAEDLEDAAEKAVGVAEIAAQ 428          
BLAST of EWM24300.1 vs. NCBI_GenBank
Match: gi|1173940443|gb|OQR89856.1| (succinyl-CoA ligase beta-chain, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 538.88 bits (1387), Expect = 0.000e+0
Identity = 278/422 (65.88%), Postives = 329/422 (77.96%), Query Frame = 0
Query:   12 SGAKQKALLR--GQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKG----DAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427
            + AK  +LLR  G Q R LN+HEY SM+IMK +G+A P+    S+  EAE  Y N L  G    D V+KAQ L+GGRGLG FKNGFKGGVH+ T   D K F E M+G+ LVTKQ+G  GI   KV L+ER+YMRREMY SI+MDR +QGP++VASP GGTSIEDVA + PE IFTEP+DI  G + E  A +AT +GL     +H  G +L+  LYKM I TDATLVEINPLAET +G + A DAK+NFDDNA +R K IFAKRD TQEDPREVEA +YDLNYIGL GNIGC+VNGAGLAM+TMDII L GG PANFLDVGGGATE QV KAFEILNAD +VK+ILVNIFGGIMRCDVIAAG+++AAK +GMKKPIVIRLQGTNV++A++LI+ SGFRMIV ++L++AA KAV IA+IV Q
Sbjct:    4 TAAKASSLLRVPGHQVRRLNLHEYQSMEIMKSFGVAVPSSLPASTPAEAEAAY-NTLKGGNHAKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKNFAEKMIGETLVTKQTGEKGIEVAKVFLMERVYMRREMYFSILMDRASQGPVLVASPAGGTSIEDVAHATPELIFTEPVDITTGPTNEQLARLATNMGLS--GESHVRGVELMGNLYKMFIGTDATLVEINPLAETPEGHVFACDAKINFDDNAAFRHKDIFAKRDKTQEDPREVEASQYDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATESQVKKAFEILNADTQVKSILVNIFGGIMRCDVIAAGVIAAAKDLGMKKPIVIRLQGTNVEKARQLIENSGFRMIVANDLDDAAQKAVKIADIVSQ 422          
BLAST of EWM24300.1 vs. NCBI_GenBank
Match: gi|1173942210|gb|OQR91248.1| (succinyl-CoA ligase beta-chain, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 277/420 (65.95%), Postives = 328/420 (78.10%), Query Frame = 0
Query:   14 AKQKALLR--GQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKG----DAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427
            AK   LLR  GQQ R LN+HEY SM+IMK +G+A P     S+  EAE  Y N L  G    D V+KAQ L+GGRGLG FKNGFKGGVH+ T   D K F E M+G+ LVTKQ+G  GI   KV L+ER+YMRREMY SI+MDR +QGP++VASP GGTSIEDVA + PE IF E +DI +G + E  + +AT +GL     +H  G +L+  LYKM I TDATLVEINPLAET +G++ A DAK+NFDDNA +R K+IFAKRD TQEDPREVEA  YDLNYIGL GNIGC+VNGAGLAM+TMDII L GG PANFLDVGGGATE QV KAFEILNADP+VK+ILVNIFGGIMRCDVIAAG+++AAK +GMKKPIVIRLQGTNV++A++LI+ SGFRMIV ++L++AA KAV IA+IV Q
Sbjct:    8 AKSAPLLRAPGQQVRRLNLHEYQSMEIMKSFGVAVPASLPASTPAEAEAAY-NTLKGGHAGKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKNFAEKMIGETLVTKQTGEKGIEVAKVFLMERVYMRREMYFSILMDRASQGPVLVASPAGGTSIEDVAHATPELIFKEAVDITKGPTNEQLSRLATSMGLS--GESHTRGVELMNNLYKMFIGTDATLVEINPLAETPEGQVFACDAKINFDDNASFRHKEIFAKRDKTQEDPREVEASAYDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATESQVKKAFEILNADPQVKSILVNIFGGIMRCDVIAAGVIAAAKDLGMKKPIVIRLQGTNVEKARQLIENSGFRMIVANDLDDAAQKAVKIADIVAQ 424          
BLAST of EWM24300.1 vs. NCBI_GenBank
Match: gi|298712066|emb|CBJ26646.1| (beta chain succinyl-coa synthetase synthetase [Ectocarpus siliculosus])

HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 274/427 (64.17%), Postives = 324/427 (75.88%), Query Frame = 0
Query:    7 NSARLSGAKQKALL-RGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKG---DAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQRT 429
            NS  LSG    A    GQQ R LNVHEY+SM IM  + I  P  ++  + ++AE     ++      D V+KAQVLSGGRG G F NGF+ GVH+     D K +   MLGQ L+TKQ+G  G+ C+KVLL+ER+YMRREMYLSIMMDR +QGP+IVA P GGTSIED+A SNPE I  E +DIM GL++  A  IA  + L     ++ AG  L+K +Y M I  D TLVEINPLAET +GR++A DAKLNFDDNAE+RQK  F  RDYTQED REVEA KYDLNYIGL+GNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQV KAFE+LNADPKV TILVNIFGGIMRCDVIA+G+++AAK IGMKKPIVIRLQGTNV++A +LI  SGF+MI+ ++L++AA KAVA+A I  Q T
Sbjct:   24 NSPLLSGKPISATGGAGQQVRRLNVHEYVSMQIMAEHDIDIPASKMAETPEDAEKACAEIMGGNAMKDVVIKAQVLSGGRGRGHFDNGFESGVHMCLKPSDAKHYASEMLGQKLITKQTGEDGLPCDKVLLMERMYMRREMYLSIMMDRGSQGPVIVACPDGGTSIEDLAESNPELIMKEEVDIMTGLTDAQAGKIAEHLKLSSDGPSYEAGKTLLKNMYAMFIERDCTLVEINPLAETPEGRVMACDAKLNFDDNAEWRQKDTFQFRDYTQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVQKAFELLNADPKVATILVNIFGGIMRCDVIASGVINAAKSIGMKKPIVIRLQGTNVEQANELIANSGFKMIISNDLDDAAEKAVAVAEIYSQAT 450          
BLAST of EWM24300.1 vs. NCBI_GenBank
Match: gi|669165626|ref|XP_008618375.1| (succinyl-CoA synthetase beta subunit [Saprolegnia diclina VS20] >gi|530729984|gb|EQC28226.1| succinyl-CoA synthetase beta subunit [Saprolegnia diclina VS20])

HSP 1 Score: 515.383 bits (1326), Expect = 6.689e-179
Identity = 273/420 (65.00%), Postives = 321/420 (76.43%), Query Frame = 0
Query:   14 AKQKALLR--GQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDA----VVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427
            AK   LLR  GQQ R LN+HEY SM+IMK +G+A P     ++  EAE  Y N L  GDA    V+KAQ L+GGRGLG FKNGFKGGVH+ T   D K F E MLG+ LVTKQ+G  GI   KV L+ER+YMRREMY SI+MDR + GP++VASP GGTSIEDVA + PE IF E ++I  G + E    +A  +GL     +   G +L+  LY M I TDATLVEINPLAET +G + A DAK+NFDDNA +R K IFAKRD TQEDPREVEA  YDLNYIGL GNIGC+VNGAGLAM+TMDII L GG PANFLDVGGGATE QV KAFEILNADP+VK+ILVNIFGGIMRCDVIAAG+++AAK +GMKKPIVIRLQGTNV++A++LI+ SGFRMIV ++L++AA KAV IA+IV Q
Sbjct:    8 AKAAPLLRAPGQQVRRLNLHEYQSMEIMKSFGVAIPASLHATTPAEAEAAY-NTLKGGDAAKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKNFAEKMLGETLVTKQTGEKGIEVAKVFLMERVYMRREMYFSILMDRASNGPVLVASPAGGTSIEDVAHATPELIFKEAVNITTGPTSEQLNRLAANMGLS--GESQKRGVELMNNLYNMFIGTDATLVEINPLAETPEGHVYACDAKINFDDNASFRHKDIFAKRDKTQEDPREVEASAYDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATESQVKKAFEILNADPQVKSILVNIFGGIMRCDVIAAGVIAAAKDLGMKKPIVIRLQGTNVEKARQLIENSGFRMIVANDLDDAAQKAVKIADIVAQ 424          
The following BLAST results are available for this feature:
BLAST of EWM24300.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105692|gb|EWM24300.1|0.000e+0100.00succinate- ligase [Nannochloropsis gaditana][more]
gi|585105693|gb|EWM24301.1|0.000e+0100.00succinate- ligase [Nannochloropsis gaditana][more]
gi|1210518701|dbj|GAX22577.1|0.000e+069.04succinyl-CoA synthetase beta subunit [Fistulifera ... [more]
gi|1210530740|dbj|GAX10691.1|0.000e+066.74succinyl-CoA synthetase beta subunit [Fistulifera ... [more]
gi|223993443|ref|XP_002286405.1|0.000e+069.15precursor of synthetase [Thalassiosira pseudonana ... [more]
gi|219117017|ref|XP_002179303.1|0.000e+068.30beta chain succinyl-coa synthetase synthetase [Pha... [more]
gi|1173940443|gb|OQR89856.1|0.000e+065.88succinyl-CoA ligase beta-chain, mitochondrial prec... [more]
gi|1173942210|gb|OQR91248.1|0.000e+065.95succinyl-CoA ligase beta-chain, mitochondrial prec... [more]
gi|298712066|emb|CBJ26646.1|0.000e+064.17beta chain succinyl-coa synthetase synthetase [Ect... [more]
gi|669165626|ref|XP_008618375.1|6.689e-17965.00succinyl-CoA synthetase beta subunit [Saprolegnia ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6363rna6363Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications