EWM24344.1, cds6336 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|585105738|gb|EWM24344.1| (microsomal signal peptidase 23 kd [Nannochloropsis gaditana]) HSP 1 Score: 421.779 bits (1083), Expect = 1.881e-149 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 Query: 1 MTRGMTTRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT 203 MTRGMTTRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT Sbjct: 1 MTRGMTTRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT 203
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|553179703|ref|XP_005852747.1| (signal peptidase complex subunit 3, partial [Nannochloropsis gaditana CCMP526] >gi|553192491|ref|XP_005855581.1| signal peptidase complex subunit 3, partial [Nannochloropsis gaditana CCMP526] >gi|422293473|gb|EKU20773.1| signal peptidase complex subunit 3, partial [Nannochloropsis gaditana CCMP526] >gi|422295784|gb|EKU23083.1| signal peptidase complex subunit 3, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 153.68 bits (387), Expect = 2.545e-44 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0 Query: 128 NVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT 203 VLSQVVVWDRIIERKEDAVLNL+AEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT Sbjct: 73 QVLSQVVVWDRIIERKEDAVLNLEAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT 148 HSP 2 Score: 99.7525 bits (247), Expect = 2.588e-23 Identity = 52/70 (74.29%), Postives = 53/70 (75.71%), Query Frame = 0 Query: 7 TRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLLVLTAFST----YGHGDYGSVQQLNV 72 TRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLL S+ Y GSV L V Sbjct: 5 TRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLLGAFECSSLLWFYSFALPGSVDCLQV 74
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|676378119|ref|XP_009032338.1| (hypothetical protein AURANDRAFT_18385 [Aureococcus anophagefferens] >gi|323456818|gb|EGB12684.1| hypothetical protein AURANDRAFT_18385 [Aureococcus anophagefferens]) HSP 1 Score: 127.487 bits (319), Expect = 1.117e-33 Identity = 62/136 (45.59%), Postives = 95/136 (69.85%), Query Frame = 0 Query: 67 VQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQY 202 V+ + VN+L+ LR G D+AL +FDL+ADL+PAF WN+KQLFVF++ EY ++ NVL+QV++WD+I+ +E+A L+ + ++ Y L D ELRN ++ LVWDHMP+TG LFM + ++++LP +Y Sbjct: 46 VETVRVNELLSLR-----AHGGV--DRALLSFDLQADLTPAFHWNLKQLFVFVLAEYYTESNVLNQVILWDKIVTSEEEARLDERNVYVKYALIDQTNELRNTSVNYLLVWDHMPVTGRLFMERETGSTSMLPKEY 174
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|1173959613|gb|OQS05828.1| (signal peptidase complex subunit 3 [Thraustotheca clavata]) HSP 1 Score: 123.25 bits (308), Expect = 4.042e-32 Identity = 64/153 (41.83%), Postives = 92/153 (60.13%), Query Frame = 0 Query: 50 LLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQY 202 + LT +TY H V+ L++N + L+R RD D+A+ +FDL ADLS F+WN KQLFV++V EY SK N ++VV+WD I+ K+DA+L K E + Y L D +LRN +T++L WD MP+ G LF ++ +P QY Sbjct: 22 MCALTTLTTYLHEPAPVVRTLSLNAVHSLKRYRDRT------DKAVLSFDLDADLSSVFNWNTKQLFVYIVAEYASKTNEKNEVVIWDAIVPSKDDAILQRKDEGVKYFLADQFDQLRNAQVTMKLKWDIMPVCGRLFQYTEGSTEFTMPAQY 168
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|635370839|emb|CCI41102.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 120.553 bits (301), Expect = 5.558e-31 Identity = 65/155 (41.94%), Postives = 93/155 (60.00%), Query Frame = 0 Query: 50 LLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRS--DLVNSTILPDQY 202 L LT +T H D SV++L ++ LRR RD D+A FDLKADLS F+WN+KQ+F+++V EY++ +N++++VV+WD II + EDA L+ E + Y L +LR N+TLRL WD MP+ G L+ S S +LP Y Sbjct: 22 LAALTTITTLLHVDNVSVEKLEMSSFHSLRRYRDKT------DRATIAFDLKADLSSIFNWNVKQVFLYIVAEYKTSQNMMNEVVIWDHIIGKMEDAYLDYDDEMVKYFLASQYDDLRGANVTLRLEWDVMPVCGMLYKGSYRSYKGSLLLPSSY 170
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|675200255|ref|XP_008909012.1| (hypothetical protein PPTG_14218 [Phytophthora parasitica INRA-310] >gi|566006722|gb|ETI29633.1| hypothetical protein F443_23250 [Phytophthora parasitica P1569] >gi|566019265|gb|ETI42176.1| hypothetical protein F443_12665 [Phytophthora parasitica P1569] >gi|567956563|gb|ETK82183.1| hypothetical protein L915_12388 [Phytophthora parasitica] >gi|567985241|gb|ETL35588.1| hypothetical protein L916_12297 [Phytophthora parasitica] >gi|568014646|gb|ETL88823.1| hypothetical protein L917_12142 [Phytophthora parasitica] >gi|568044886|gb|ETM42062.1| hypothetical protein L914_12224 [Phytophthora parasitica] >gi|568090661|gb|ETN05490.1| hypothetical protein PPTG_14218 [Phytophthora parasitica INRA-310] >gi|570322847|gb|ETO70795.1| hypothetical protein F444_12774 [Phytophthora parasitica P1976] >gi|570946659|gb|ETP11916.1| hypothetical protein F441_12627 [Phytophthora parasitica CJ01A1] >gi|570978945|gb|ETP40030.1| hypothetical protein F442_12576 [Phytophthora parasitica P10297] >gi|970651315|gb|KUF90158.1| hypothetical protein AM588_10004313 [Phytophthora nicotianae]) HSP 1 Score: 118.627 bits (296), Expect = 3.776e-30 Identity = 67/157 (42.68%), Postives = 94/157 (59.87%), Query Frame = 0 Query: 48 AHLLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDA-VLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTI-LPDQY 202 A + LTA ST+ H V++L + KL LR RD D+A +FDL ADLS F+WN+KQLFV+++ ++ES N +QVV+WD+I++ KE A L + E + Y L D ELR N+TL L WD MP+ G LF+ S + +PD+Y Sbjct: 20 AIMCTLTAISTFLHEPEPVVRRLEMTKLHSLRNYRDKA------DRATLSFDLDADLSSVFNWNVKQLFVYVMADFESASNSRNQVVIWDKIVQTKEAAGQLQFQDEGVKYFLADQYDELRGANVTLSLEWDIMPVCGRLFVHSSDTKANFEMPDKY 170
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|325179972|emb|CCA14374.1| (signal peptidase complex subunit 3 putative [Albugo laibachii Nc14]) HSP 1 Score: 118.242 bits (295), Expect = 4.361e-30 Identity = 66/155 (42.58%), Postives = 95/155 (61.29%), Query Frame = 0 Query: 50 LLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRS--DLVNSTILPDQY 202 L+ LTA +T H D +V +L ++ LR+ RD D+A FDLKADLS F+WN+KQ+F++++ E+E+ +N L++VV+WD II +KEDA L+ E + Y L +LR N+TLRL WD MP+ G L+ S S +LPD Y Sbjct: 22 LVALTAITTIIHVDKVAVDKLEMSSFHSLRKYRDKT------DRATIAFDLKADLSSIFNWNVKQIFLYIIAEFETPQNKLNEVVIWDWIIGKKEDADLDYDDEMVKYFLASQYDDLRGANVTLRLEWDVMPVCGRLYKGSYHSPKGSFLLPDLY 170
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|219113527|ref|XP_002186347.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583197|gb|ACI65817.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 117.472 bits (293), Expect = 7.863e-30 Identity = 65/153 (42.48%), Postives = 97/153 (63.40%), Query Frame = 0 Query: 53 LTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTI---LPDQY 202 L A S GH S++ V ++++L +R G YD+AL +FDL DL+PAF WNIKQLFV++V YE++ +Q+V+WD+I+E ++ V++ K F+ Y L D + +LR K++TL+L WDHMP+TG L+M V S LP +Y Sbjct: 25 LAALSKLGH----SLRHKPVVEVLKLNTLRSLKSHG-GYDRALLSFDLMVDLAPAFHWNIKQLFVYVVAIYETEGRN-NQIVLWDKIVEADDEKVIDEKNVFVKYALSDQSDQLRGKDVTLQLQWDHMPITGLLYMDGQAVESASKFRLPAEY 171
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|953486839|emb|CEG48901.1| (RxLR-like protein [Plasmopara halstedii]) HSP 1 Score: 117.472 bits (293), Expect = 8.752e-30 Identity = 66/157 (42.04%), Postives = 94/157 (59.87%), Query Frame = 0 Query: 48 AHLLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDA-VLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTI-LPDQY 202 A + LT ST+ H + V++L + +L LR RD D+A +FDL ADLS F+WN+KQLFV++V +++S N +QVV+WD+I++ KE A +L + E + Y L D ELR N+TL L WD MP+ G LF+ S + LPD Y Sbjct: 20 AVMCALTTLSTFLHEESPVVKRLEMTELHSLRNYRDKT------DRATLSFDLDADLSSVFNWNVKQLFVYVVADFKSASNARNQVVIWDKIVQTKEAASLLKYENEGVKYFLADQYDELRGANVTLSLEWDIMPVCGRLFIHSSNTKAIFTLPDTY 170
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|1210528086|dbj|GAX13201.1| (signal peptidase complex subunit 3 [Fistulifera solaris]) HSP 1 Score: 116.701 bits (291), Expect = 1.683e-29 Identity = 67/157 (42.68%), Postives = 96/157 (61.15%), Query Frame = 0 Query: 50 LLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDP-AVELRNKNITLRLVWDHMPLTGTLFMRSDLVNST---ILPDQY 202 L + A S GH +++Q V K +++R+ R G D+AL +FDL DL+PAF WNIKQLFV++V YE+ +QVV+WD+I+E + VL K F+ YPL D ELR K +TL+L WDHMP+TG L M ++++ +LP +Y Sbjct: 22 LSCMAALSKVGH----TLRQRPVVKKLEMRKFRSLKSHG-GVDRALLSFDLDVDLTPAFHWNIKQLFVYVVAIYETNGR-YNQVVLWDKIVEAGDSKVLKEKNTFIKYPLVDKRGGELRGKEVTLQLQWDHMPITGLLHMDKQPLDTSSKFVLPTEY 172 The following BLAST results are available for this feature:
BLAST of EWM24344.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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