EWM24344.1, cds6336 (CDS) Nannochloropsis gaditana

Overview
NameEWM24344.1
Unique Namecds6336
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:322799..322815 +
Alignment locationCM002468.1:322934..323035 +
Alignment locationCM002468.1:323252..323286 +
Alignment locationCM002468.1:323342..323357 +
Alignment locationCM002468.1:323583..323645 +
Alignment locationCM002468.1:323781..323854 +
Alignment locationCM002468.1:324077..324153 +
Alignment locationCM002468.1:324239..324354 +
Alignment locationCM002468.1:324470..324581 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24344.1
Productmicrosomal signal peptidase 23 kd
Orig transcript idgnl|cribi|Naga_100105g6.10583.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:322799..322815 +
CM002468.1supercontigCM002468.1:322934..323035 +
CM002468.1supercontigCM002468.1:323252..323286 +
CM002468.1supercontigCM002468.1:323342..323357 +
CM002468.1supercontigCM002468.1:323583..323645 +
CM002468.1supercontigCM002468.1:323781..323854 +
CM002468.1supercontigCM002468.1:324077..324153 +
CM002468.1supercontigCM002468.1:324239..324354 +
CM002468.1supercontigCM002468.1:324470..324581 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0019538protein metabolic process
GO:0006465signal peptide processing
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0005787signal peptidase complex
Vocabulary: INTERPRO
TermDefinition
IPR007653SPC22
Homology
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|585105738|gb|EWM24344.1| (microsomal signal peptidase 23 kd [Nannochloropsis gaditana])

HSP 1 Score: 421.779 bits (1083), Expect = 1.881e-149
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
Query:    1 MTRGMTTRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT 203
            MTRGMTTRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT
Sbjct:    1 MTRGMTTRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT 203          
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|553179703|ref|XP_005852747.1| (signal peptidase complex subunit 3, partial [Nannochloropsis gaditana CCMP526] >gi|553192491|ref|XP_005855581.1| signal peptidase complex subunit 3, partial [Nannochloropsis gaditana CCMP526] >gi|422293473|gb|EKU20773.1| signal peptidase complex subunit 3, partial [Nannochloropsis gaditana CCMP526] >gi|422295784|gb|EKU23083.1| signal peptidase complex subunit 3, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 153.68 bits (387), Expect = 2.545e-44
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0
Query:  128 NVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT 203
             VLSQVVVWDRIIERKEDAVLNL+AEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT
Sbjct:   73 QVLSQVVVWDRIIERKEDAVLNLEAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQYT 148          

HSP 2 Score: 99.7525 bits (247), Expect = 2.588e-23
Identity = 52/70 (74.29%), Postives = 53/70 (75.71%), Query Frame = 0
Query:    7 TRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLLVLTAFST----YGHGDYGSVQQLNV 72
            TRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLL     S+    Y     GSV  L V
Sbjct:    5 TRQNVIKALYVGIWSALLAASWACFTIRQRPWCSLEQKRKDAHLLGAFECSSLLWFYSFALPGSVDCLQV 74          
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|676378119|ref|XP_009032338.1| (hypothetical protein AURANDRAFT_18385 [Aureococcus anophagefferens] >gi|323456818|gb|EGB12684.1| hypothetical protein AURANDRAFT_18385 [Aureococcus anophagefferens])

HSP 1 Score: 127.487 bits (319), Expect = 1.117e-33
Identity = 62/136 (45.59%), Postives = 95/136 (69.85%), Query Frame = 0
Query:   67 VQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQY 202
            V+ + VN+L+ LR        G   D+AL +FDL+ADL+PAF WN+KQLFVF++ EY ++ NVL+QV++WD+I+  +E+A L+ +  ++ Y L D   ELRN ++   LVWDHMP+TG LFM  +  ++++LP +Y
Sbjct:   46 VETVRVNELLSLR-----AHGGV--DRALLSFDLQADLTPAFHWNLKQLFVFVLAEYYTESNVLNQVILWDKIVTSEEEARLDERNVYVKYALIDQTNELRNTSVNYLLVWDHMPVTGRLFMERETGSTSMLPKEY 174          
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|1173959613|gb|OQS05828.1| (signal peptidase complex subunit 3 [Thraustotheca clavata])

HSP 1 Score: 123.25 bits (308), Expect = 4.042e-32
Identity = 64/153 (41.83%), Postives = 92/153 (60.13%), Query Frame = 0
Query:   50 LLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTILPDQY 202
            +  LT  +TY H     V+ L++N +  L+R RD        D+A+ +FDL ADLS  F+WN KQLFV++V EY SK N  ++VV+WD I+  K+DA+L  K E + Y L D   +LRN  +T++L WD MP+ G LF  ++      +P QY
Sbjct:   22 MCALTTLTTYLHEPAPVVRTLSLNAVHSLKRYRDRT------DKAVLSFDLDADLSSVFNWNTKQLFVYIVAEYASKTNEKNEVVIWDAIVPSKDDAILQRKDEGVKYFLADQFDQLRNAQVTMKLKWDIMPVCGRLFQYTEGSTEFTMPAQY 168          
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|635370839|emb|CCI41102.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 120.553 bits (301), Expect = 5.558e-31
Identity = 65/155 (41.94%), Postives = 93/155 (60.00%), Query Frame = 0
Query:   50 LLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRS--DLVNSTILPDQY 202
            L  LT  +T  H D  SV++L ++    LRR RD        D+A   FDLKADLS  F+WN+KQ+F+++V EY++ +N++++VV+WD II + EDA L+   E + Y L     +LR  N+TLRL WD MP+ G L+  S      S +LP  Y
Sbjct:   22 LAALTTITTLLHVDNVSVEKLEMSSFHSLRRYRDKT------DRATIAFDLKADLSSIFNWNVKQVFLYIVAEYKTSQNMMNEVVIWDHIIGKMEDAYLDYDDEMVKYFLASQYDDLRGANVTLRLEWDVMPVCGMLYKGSYRSYKGSLLLPSSY 170          
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|675200255|ref|XP_008909012.1| (hypothetical protein PPTG_14218 [Phytophthora parasitica INRA-310] >gi|566006722|gb|ETI29633.1| hypothetical protein F443_23250 [Phytophthora parasitica P1569] >gi|566019265|gb|ETI42176.1| hypothetical protein F443_12665 [Phytophthora parasitica P1569] >gi|567956563|gb|ETK82183.1| hypothetical protein L915_12388 [Phytophthora parasitica] >gi|567985241|gb|ETL35588.1| hypothetical protein L916_12297 [Phytophthora parasitica] >gi|568014646|gb|ETL88823.1| hypothetical protein L917_12142 [Phytophthora parasitica] >gi|568044886|gb|ETM42062.1| hypothetical protein L914_12224 [Phytophthora parasitica] >gi|568090661|gb|ETN05490.1| hypothetical protein PPTG_14218 [Phytophthora parasitica INRA-310] >gi|570322847|gb|ETO70795.1| hypothetical protein F444_12774 [Phytophthora parasitica P1976] >gi|570946659|gb|ETP11916.1| hypothetical protein F441_12627 [Phytophthora parasitica CJ01A1] >gi|570978945|gb|ETP40030.1| hypothetical protein F442_12576 [Phytophthora parasitica P10297] >gi|970651315|gb|KUF90158.1| hypothetical protein AM588_10004313 [Phytophthora nicotianae])

HSP 1 Score: 118.627 bits (296), Expect = 3.776e-30
Identity = 67/157 (42.68%), Postives = 94/157 (59.87%), Query Frame = 0
Query:   48 AHLLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDA-VLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTI-LPDQY 202
            A +  LTA ST+ H     V++L + KL  LR  RD        D+A  +FDL ADLS  F+WN+KQLFV+++ ++ES  N  +QVV+WD+I++ KE A  L  + E + Y L D   ELR  N+TL L WD MP+ G LF+ S    +   +PD+Y
Sbjct:   20 AIMCTLTAISTFLHEPEPVVRRLEMTKLHSLRNYRDKA------DRATLSFDLDADLSSVFNWNVKQLFVYVMADFESASNSRNQVVIWDKIVQTKEAAGQLQFQDEGVKYFLADQYDELRGANVTLSLEWDIMPVCGRLFVHSSDTKANFEMPDKY 170          
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|325179972|emb|CCA14374.1| (signal peptidase complex subunit 3 putative [Albugo laibachii Nc14])

HSP 1 Score: 118.242 bits (295), Expect = 4.361e-30
Identity = 66/155 (42.58%), Postives = 95/155 (61.29%), Query Frame = 0
Query:   50 LLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRS--DLVNSTILPDQY 202
            L+ LTA +T  H D  +V +L ++    LR+ RD        D+A   FDLKADLS  F+WN+KQ+F++++ E+E+ +N L++VV+WD II +KEDA L+   E + Y L     +LR  N+TLRL WD MP+ G L+  S      S +LPD Y
Sbjct:   22 LVALTAITTIIHVDKVAVDKLEMSSFHSLRKYRDKT------DRATIAFDLKADLSSIFNWNVKQIFLYIIAEFETPQNKLNEVVIWDWIIGKKEDADLDYDDEMVKYFLASQYDDLRGANVTLRLEWDVMPVCGRLYKGSYHSPKGSFLLPDLY 170          
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|219113527|ref|XP_002186347.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583197|gb|ACI65817.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 117.472 bits (293), Expect = 7.863e-30
Identity = 65/153 (42.48%), Postives = 97/153 (63.40%), Query Frame = 0
Query:   53 LTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTI---LPDQY 202
            L A S  GH    S++   V ++++L  +R     G  YD+AL +FDL  DL+PAF WNIKQLFV++V  YE++    +Q+V+WD+I+E  ++ V++ K  F+ Y L D + +LR K++TL+L WDHMP+TG L+M    V S     LP +Y
Sbjct:   25 LAALSKLGH----SLRHKPVVEVLKLNTLRSLKSHG-GYDRALLSFDLMVDLAPAFHWNIKQLFVYVVAIYETEGRN-NQIVLWDKIVEADDEKVIDEKNVFVKYALSDQSDQLRGKDVTLQLQWDHMPITGLLYMDGQAVESASKFRLPAEY 171          
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|953486839|emb|CEG48901.1| (RxLR-like protein [Plasmopara halstedii])

HSP 1 Score: 117.472 bits (293), Expect = 8.752e-30
Identity = 66/157 (42.04%), Postives = 94/157 (59.87%), Query Frame = 0
Query:   48 AHLLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDA-VLNLKAEFLDYPLRDPAVELRNKNITLRLVWDHMPLTGTLFMRSDLVNSTI-LPDQY 202
            A +  LT  ST+ H +   V++L + +L  LR  RD        D+A  +FDL ADLS  F+WN+KQLFV++V +++S  N  +QVV+WD+I++ KE A +L  + E + Y L D   ELR  N+TL L WD MP+ G LF+ S    +   LPD Y
Sbjct:   20 AVMCALTTLSTFLHEESPVVKRLEMTELHSLRNYRDKT------DRATLSFDLDADLSSVFNWNVKQLFVYVVADFKSASNARNQVVIWDKIVQTKEAASLLKYENEGVKYFLADQYDELRGANVTLSLEWDIMPVCGRLFIHSSNTKAIFTLPDTY 170          
BLAST of EWM24344.1 vs. NCBI_GenBank
Match: gi|1210528086|dbj|GAX13201.1| (signal peptidase complex subunit 3 [Fistulifera solaris])

HSP 1 Score: 116.701 bits (291), Expect = 1.683e-29
Identity = 67/157 (42.68%), Postives = 96/157 (61.15%), Query Frame = 0
Query:   50 LLVLTAFSTYGHGDYGSVQQLNVNKLIQLRRVRDNGQTGYHYDQALFNFDLKADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPLRDP-AVELRNKNITLRLVWDHMPLTGTLFMRSDLVNST---ILPDQY 202
            L  + A S  GH    +++Q  V K +++R+ R     G   D+AL +FDL  DL+PAF WNIKQLFV++V  YE+     +QVV+WD+I+E  +  VL  K  F+ YPL D    ELR K +TL+L WDHMP+TG L M    ++++   +LP +Y
Sbjct:   22 LSCMAALSKVGH----TLRQRPVVKKLEMRKFRSLKSHG-GVDRALLSFDLDVDLTPAFHWNIKQLFVYVVAIYETNGR-YNQVVLWDKIVEAGDSKVLKEKNTFIKYPLVDKRGGELRGKEVTLQLQWDHMPITGLLHMDKQPLDTSSKFVLPTEY 172          
The following BLAST results are available for this feature:
BLAST of EWM24344.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105738|gb|EWM24344.1|1.881e-149100.00microsomal signal peptidase 23 kd [Nannochloropsis... [more]
gi|553179703|ref|XP_005852747.1|2.545e-4497.37signal peptidase complex subunit 3, partial [Nanno... [more]
gi|676378119|ref|XP_009032338.1|1.117e-3345.59hypothetical protein AURANDRAFT_18385 [Aureococcus... [more]
gi|1173959613|gb|OQS05828.1|4.042e-3241.83signal peptidase complex subunit 3 [Thraustotheca ... [more]
gi|635370839|emb|CCI41102.1|5.558e-3141.94unnamed protein product [Albugo candida][more]
gi|675200255|ref|XP_008909012.1|3.776e-3042.68hypothetical protein PPTG_14218 [Phytophthora para... [more]
gi|325179972|emb|CCA14374.1|4.361e-3042.58signal peptidase complex subunit 3 putative [Albug... [more]
gi|219113527|ref|XP_002186347.1|7.863e-3042.48predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|953486839|emb|CEG48901.1|8.752e-3042.04RxLR-like protein [Plasmopara halstedii][more]
gi|1210528086|dbj|GAX13201.1|1.683e-2942.68signal peptidase complex subunit 3 [Fistulifera so... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6351rna6351Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications